Wall clock time and date at job start Sat Apr 11 2020 05:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.40094 * 126.03671 * 2 1 4 4 C 1.30828 * 108.20603 * 180.02562 * 3 2 1 5 5 C 1.39876 * 108.20502 * 359.78247 * 4 3 2 6 6 C 1.34945 * 126.03849 * 180.02562 * 2 1 3 7 7 C 1.50691 * 126.12973 * 359.94219 * 6 2 1 8 8 C 1.53005 * 109.47358 * 265.00200 * 7 6 2 9 9 O 1.45195 * 109.47143 * 179.97438 * 8 7 6 10 10 C 1.34870 * 116.99945 * 177.01422 * 9 8 7 11 11 O 1.21592 * 119.99916 * 5.42844 * 10 9 8 12 12 C 1.46711 * 120.00203 * 185.43144 * 10 9 8 13 13 C 1.36220 * 125.44838 * 174.48255 * 12 10 9 14 14 C 1.41658 * 107.74286 * 179.84952 * 13 12 10 15 15 C 1.40037 * 133.34269 * 180.18899 * 14 13 12 16 16 C 1.36564 * 119.83361 * 180.31072 * 15 14 13 17 17 C 1.38859 * 120.60277 * 359.95070 * 16 15 14 18 18 C 1.37837 * 120.63812 * 0.02562 * 17 16 15 19 19 C 1.39098 * 119.81460 * 0.02562 * 18 17 16 20 20 N 1.37815 * 133.14750 * 180.02562 * 19 18 17 21 21 C 1.36871 * 125.62465 * 0.02562 * 20 19 18 22 22 H 1.08003 * 120.00212 * 140.13373 * 21 20 19 23 23 C 1.39021 * 120.00162 * 320.13083 * 21 20 19 24 24 N 1.31341 * 119.99925 * 341.73819 * 23 21 20 25 25 Si 1.86796 * 120.00162 * 161.73261 * 23 21 20 26 26 H 1.48506 * 109.47199 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.47147 * 120.00342 * 25 23 21 28 28 H 1.48506 * 109.47495 * 240.00638 * 25 23 21 29 29 H 1.08999 * 109.47262 * 269.97260 * 1 2 3 30 30 H 1.09006 * 109.47594 * 29.97305 * 1 2 3 31 31 H 1.09006 * 109.47397 * 149.97313 * 1 2 3 32 32 H 1.08009 * 125.90071 * 180.02562 * 4 3 2 33 33 H 1.08001 * 126.04099 * 180.23623 * 5 4 3 34 34 H 1.09008 * 109.46913 * 24.99923 * 7 6 2 35 35 H 1.09002 * 109.47899 * 145.00082 * 7 6 2 36 36 H 1.08999 * 109.47089 * 299.99888 * 8 7 6 37 37 H 1.09002 * 109.46575 * 59.99930 * 8 7 6 38 38 H 1.07995 * 126.12930 * 359.97438 * 13 12 10 39 39 H 1.08002 * 120.08169 * 0.30873 * 15 14 13 40 40 H 1.08001 * 119.70275 * 179.97438 * 16 15 14 41 41 H 1.07999 * 119.68190 * 180.02562 * 17 16 15 42 42 H 1.07998 * 120.09686 * 179.97438 * 18 17 16 43 43 H 0.97004 * 120.00060 * 185.12796 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2891 1.1329 0.0000 4 6 3.5345 0.7323 -0.0006 5 6 3.5437 -0.6665 0.0041 6 6 2.2588 -1.0912 -0.0005 7 6 1.7974 -2.5257 0.0001 8 6 1.7620 -3.0496 1.4372 9 8 1.3168 -4.4316 1.4378 10 6 1.2891 -5.0654 2.6280 11 8 1.5324 -4.4520 3.6492 12 6 0.9653 -6.4950 2.6904 13 6 1.0090 -7.2667 3.8121 14 6 0.6231 -8.5801 3.4477 15 6 0.4812 -9.7741 4.1655 16 6 0.0881 -10.9119 3.5205 17 6 -0.1739 -10.8969 2.1569 18 6 -0.0417 -9.7339 1.4290 19 6 0.3583 -8.5625 2.0636 20 7 0.5743 -7.2762 1.6187 21 6 0.4237 -6.8427 0.3293 22 1 -0.0138 -5.8751 0.1324 23 6 0.8341 -7.6478 -0.7272 24 7 1.6729 -8.6355 -0.5128 25 14 0.1924 -7.3250 -2.4515 26 1 -0.7320 -6.1631 -2.4263 27 1 1.3322 -7.0306 -3.3568 28 1 -0.5327 -8.5244 -2.9425 29 1 -0.3634 -0.0005 1.0276 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3634 -0.8898 -0.5143 32 1 4.4054 1.3712 -0.0003 33 1 4.4211 -1.2962 0.0085 34 1 0.7991 -2.5864 -0.4334 35 1 2.4870 -3.1296 -0.5898 36 1 2.7602 -2.9889 1.8708 37 1 1.0723 -2.4457 2.0271 38 1 1.2859 -6.9359 4.8021 39 1 0.6820 -9.7951 5.2264 40 1 -0.0203 -11.8317 4.0761 41 1 -0.4842 -11.8052 1.6620 42 1 -0.2474 -9.7323 0.3688 43 1 2.0170 -9.1502 -1.2595 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759917192.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:12 Heat of formation + Delta-G solvation = 37.257817 kcal Electronic energy + Delta-G solvation = -28504.021720 eV Core-core repulsion = 24516.036475 eV Total energy + Delta-G solvation = -3987.985246 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.32248 -42.20195 -40.94874 -37.75732 -37.57359 -35.40341 -34.77735 -33.75390 -32.52075 -30.81728 -30.19635 -29.43374 -27.64899 -26.77111 -25.81744 -24.09768 -22.74708 -22.15491 -22.07830 -21.10828 -20.63497 -19.76401 -18.83191 -17.81371 -17.60606 -17.44776 -17.13401 -16.47543 -16.41272 -16.33685 -15.68525 -15.31667 -15.13779 -14.97811 -14.72136 -14.57760 -14.50033 -14.20827 -13.69213 -13.67955 -13.62063 -13.49544 -13.29033 -13.12178 -12.98151 -12.84340 -12.66939 -12.35436 -12.14182 -11.95126 -11.79472 -11.72302 -11.55374 -11.48097 -10.96968 -10.44161 -10.33310 -9.56174 -8.94681 -8.68530 -8.39439 -6.34311 -0.07451 0.72069 1.08900 1.16974 1.38854 1.42100 1.47837 1.54092 1.69938 1.88357 2.10831 2.32251 2.77054 2.87031 3.34686 3.51875 3.65061 3.75018 3.81909 4.04641 4.18828 4.23037 4.28379 4.33560 4.42677 4.43137 4.51232 4.58009 4.72160 4.74019 4.77035 4.79653 4.83027 4.97472 5.15696 5.17669 5.21439 5.29334 5.33733 5.44710 5.68563 5.75142 5.90227 5.95899 5.98603 6.15839 6.28987 6.57409 6.67054 6.70366 6.99297 7.45231 8.39442 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013964 B = 0.003240 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.674528 B = 8640.132415 C =10061.863072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.377 5.377 3 N -0.327 5.327 4 C 0.044 3.956 5 C -0.277 4.277 6 C 0.081 3.919 7 C -0.046 4.046 8 C 0.073 3.927 9 O -0.338 6.338 10 C 0.549 3.451 11 O -0.539 6.539 12 C -0.051 4.051 13 C -0.166 4.166 14 C -0.153 4.153 15 C -0.088 4.088 16 C -0.151 4.151 17 C -0.134 4.134 18 C -0.085 4.085 19 C 0.064 3.936 20 N -0.254 5.254 21 C -0.365 4.365 22 H 0.116 0.884 23 C 0.022 3.978 24 N -0.850 5.850 25 Si 0.992 3.008 26 H -0.250 1.250 27 H -0.268 1.268 28 H -0.269 1.269 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.213 0.787 33 H 0.162 0.838 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.148 0.852 39 H 0.137 0.863 40 H 0.148 0.852 41 H 0.138 0.862 42 H 0.099 0.901 43 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.342 7.335 -2.243 7.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.161 5.161 3 N -0.149 5.149 4 C -0.140 4.140 5 C -0.306 4.306 6 C -0.047 4.047 7 C -0.085 4.085 8 C -0.002 4.002 9 O -0.254 6.254 10 C 0.398 3.602 11 O -0.431 6.431 12 C -0.164 4.164 13 C -0.194 4.194 14 C -0.157 4.157 15 C -0.107 4.107 16 C -0.170 4.170 17 C -0.154 4.154 18 C -0.105 4.105 19 C -0.051 4.051 20 N 0.083 4.917 21 C -0.492 4.492 22 H 0.134 0.866 23 C -0.188 4.188 24 N -0.479 5.479 25 Si 0.812 3.188 26 H -0.173 1.173 27 H -0.193 1.193 28 H -0.194 1.194 29 H 0.100 0.900 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.230 0.770 33 H 0.179 0.821 34 H 0.118 0.882 35 H 0.126 0.874 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.166 0.834 39 H 0.155 0.845 40 H 0.166 0.834 41 H 0.156 0.844 42 H 0.117 0.883 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.178 8.582 -2.433 9.182 hybrid contribution 0.735 -0.324 -0.681 1.053 sum -1.443 8.257 -3.114 8.942 Atomic orbital electron populations 1.22175 0.72849 1.05917 1.04447 1.48807 1.07637 1.03012 1.56597 1.77301 1.02823 1.08776 1.26047 1.24360 0.95631 0.95362 0.98695 1.21636 0.96726 0.95682 1.16563 1.20843 0.91885 0.89688 1.02293 1.19997 1.04938 0.88359 0.95193 1.22994 1.00417 0.78582 0.98195 1.86794 1.77944 1.27915 1.32718 1.19897 0.72993 0.86050 0.81284 1.90768 1.49323 1.67015 1.35991 1.19490 1.16219 0.89730 0.90975 1.20586 1.09876 0.91772 0.97156 1.18341 1.09295 0.94904 0.93187 1.20486 0.99895 0.90638 0.99633 1.20768 1.03333 0.98487 0.94389 1.21033 1.02847 0.96638 0.94918 1.20163 1.00857 0.90930 0.98528 1.18648 1.06060 0.87394 0.93030 1.40311 1.39757 1.05636 1.05965 1.20189 1.43591 1.06181 0.79276 0.86627 1.26500 0.93474 0.94312 1.04553 1.70049 1.23907 1.18664 1.35283 0.84907 0.78962 0.79568 0.75323 1.17348 1.19255 1.19421 0.90025 0.88052 0.87815 0.77040 0.82075 0.88246 0.87382 0.91152 0.91399 0.83382 0.84522 0.83421 0.84436 0.88293 0.90374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.46 11.27 127.77 1.44 2.90 16 2 N -0.38 -9.10 4.01 -356.04 -1.43 -10.53 16 3 N -0.33 -8.54 12.58 -57.02 -0.72 -9.25 16 4 C 0.04 0.98 12.03 85.24 1.02 2.00 16 5 C -0.28 -6.40 10.72 21.99 0.24 -6.16 16 6 C 0.08 1.97 6.18 41.40 0.26 2.23 16 7 C -0.05 -1.13 5.88 29.85 0.18 -0.95 16 8 C 0.07 2.22 5.47 71.98 0.39 2.62 16 9 O -0.34 -13.51 8.06 -57.83 -0.47 -13.98 16 10 C 0.55 24.88 7.90 70.04 0.55 25.43 16 11 O -0.54 -24.73 16.65 19.54 0.33 -24.40 16 12 C -0.05 -2.53 6.76 39.87 0.27 -2.26 16 13 C -0.17 -7.69 10.55 22.64 0.24 -7.46 16 14 C -0.15 -7.04 6.16 -21.34 -0.13 -7.17 16 15 C -0.09 -3.30 10.06 22.31 0.22 -3.08 16 16 C -0.15 -5.14 9.97 22.03 0.22 -4.92 16 17 C -0.13 -5.01 10.02 22.32 0.22 -4.79 16 18 C -0.08 -3.90 8.62 22.38 0.19 -3.70 16 19 C 0.06 3.22 6.08 39.07 0.24 3.46 16 20 N -0.25 -13.10 2.82 -331.40 -0.93 -14.03 16 21 C -0.37 -18.11 8.67 84.09 0.73 -17.38 16 22 H 0.12 5.51 6.95 -2.91 -0.02 5.49 16 23 C 0.02 1.03 4.40 84.95 0.37 1.40 16 24 N -0.85 -42.68 11.14 21.67 0.24 -42.43 16 25 Si 0.99 35.96 29.59 68.60 2.03 37.99 16 26 H -0.25 -8.55 7.11 99.48 0.71 -7.85 16 27 H -0.27 -9.40 7.11 99.48 0.71 -8.69 16 28 H -0.27 -9.59 7.11 99.48 0.71 -8.88 16 29 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.10 1.43 6.98 -2.38 -0.02 1.41 16 32 H 0.21 3.04 8.06 -2.91 -0.02 3.02 16 33 H 0.16 3.19 8.06 -2.91 -0.02 3.16 16 34 H 0.10 2.18 6.95 -2.38 -0.02 2.16 16 35 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.07 2.18 8.13 -2.39 -0.02 2.16 16 37 H 0.07 2.01 8.14 -2.39 -0.02 2.00 16 38 H 0.15 6.15 8.06 -2.91 -0.02 6.13 16 39 H 0.14 4.20 8.06 -2.91 -0.02 4.17 16 40 H 0.15 3.75 8.06 -2.91 -0.02 3.72 16 41 H 0.14 4.19 8.06 -2.91 -0.02 4.16 16 42 H 0.10 4.71 6.57 -2.91 -0.02 4.69 16 43 H 0.29 13.24 8.31 -92.71 -0.77 12.47 16 Total: -1.00 -66.63 371.72 6.75 -59.88 By element: Atomic # 1 Polarization: 33.56 SS G_CDS: 1.04 Total: 34.60 kcal Atomic # 6 Polarization: -24.50 SS G_CDS: 6.66 Total: -17.84 kcal Atomic # 7 Polarization: -73.41 SS G_CDS: -2.84 Total: -76.25 kcal Atomic # 8 Polarization: -38.24 SS G_CDS: -0.14 Total: -38.38 kcal Atomic # 14 Polarization: 35.96 SS G_CDS: 2.03 Total: 37.99 kcal Total: -66.63 6.75 -59.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759917192.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.136 kcal (2) G-P(sol) polarization free energy of solvation -66.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds