Wall clock time and date at job start Sat Apr 11 2020 05:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47218 * 2 1 4 4 C 1.34774 * 119.99989 * 180.02562 * 3 2 1 5 5 O 1.21288 * 120.00086 * 359.97438 * 4 3 2 6 6 C 1.50702 * 120.00164 * 180.02562 * 4 3 2 7 7 H 1.09005 * 109.46897 * 299.99562 * 6 4 3 8 8 C 1.53003 * 109.47229 * 59.99523 * 6 4 3 9 9 N 1.46500 * 109.47421 * 179.97438 * 6 4 3 10 10 C 1.34777 * 120.00264 * 154.71903 * 9 6 4 11 11 O 1.21589 * 119.99798 * 0.27787 * 10 9 6 12 12 N 1.34774 * 120.00229 * 180.27553 * 10 9 6 13 13 C 1.40129 * 119.99968 * 174.33083 * 12 10 9 14 14 C 1.38689 * 120.07987 * 335.23175 * 13 12 10 15 15 C 1.38201 * 120.02402 * 179.76365 * 14 13 12 16 16 C 1.38542 * 120.17396 * 0.51257 * 15 14 13 17 17 F 1.35092 * 119.92574 * 179.75961 * 16 15 14 18 18 C 1.38343 * 120.14852 * 359.74428 * 16 15 14 19 19 C 1.38740 * 119.98164 * 359.97438 * 18 16 15 20 20 O 1.35783 * 120.08841 * 179.97438 * 19 18 16 21 21 C 1.34809 * 116.99944 * 5.19093 * 20 19 18 22 22 H 1.07995 * 120.00238 * 354.98357 * 21 20 19 23 23 C 1.38637 * 119.99718 * 174.97959 * 21 20 19 24 24 N 1.31567 * 119.99689 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99794 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.46896 * 89.99998 * 25 23 21 27 27 H 1.48493 * 109.46949 * 210.00046 * 25 23 21 28 28 H 1.48499 * 109.47406 * 330.00247 * 25 23 21 29 29 H 1.08991 * 109.47271 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46839 * 300.00089 * 1 2 3 31 31 H 1.08999 * 109.47097 * 59.99476 * 1 2 3 32 32 H 1.09003 * 109.46839 * 239.99911 * 2 1 3 33 33 H 1.09005 * 109.46995 * 120.00063 * 2 1 3 34 34 H 0.97002 * 120.00351 * 359.97438 * 3 2 1 35 35 H 1.08998 * 109.46598 * 60.00597 * 8 6 4 36 36 H 1.08998 * 109.46742 * 180.02562 * 8 6 4 37 37 H 1.08999 * 109.46939 * 300.00306 * 8 6 4 38 38 H 0.97005 * 119.99722 * 335.00189 * 9 6 4 39 39 H 0.97000 * 119.99817 * 354.33907 * 12 10 9 40 40 H 1.08006 * 119.98596 * 0.02562 * 14 13 12 41 41 H 1.08000 * 119.90967 * 180.23186 * 15 14 13 42 42 H 1.08008 * 120.00738 * 180.02562 * 18 16 15 43 43 H 0.97009 * 119.99484 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6274 -0.0005 5 8 4.1316 0.7056 -0.0005 6 6 3.8458 3.0483 0.0001 7 1 3.4821 3.5626 -0.8895 8 6 3.3364 3.7689 1.2499 9 7 5.3108 3.0483 -0.0001 10 6 5.9847 4.1039 -0.4981 11 8 5.3768 5.0584 -0.9427 12 7 7.3324 4.1015 -0.5033 13 6 8.0325 5.1428 -1.1271 14 6 7.4337 5.8717 -2.1438 15 6 8.1235 6.9016 -2.7549 16 6 9.4176 7.2024 -2.3622 17 9 10.0889 8.2071 -2.9663 18 6 10.0237 6.4765 -1.3525 19 6 9.3350 5.4451 -0.7306 20 8 9.9281 4.7308 0.2603 21 6 11.1458 5.1423 0.6666 22 1 11.6408 5.9535 0.1536 23 6 11.7628 4.5239 1.7432 24 7 11.1599 3.5353 2.3679 25 14 13.4499 5.0945 2.3068 26 1 13.2959 6.1625 3.3271 27 1 14.1882 3.9491 2.8966 28 1 14.2066 5.6255 1.1446 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.3881 2.1185 -0.0004 35 1 3.7002 3.2545 2.1394 36 1 3.6994 4.7966 1.2500 37 1 2.2464 3.7689 1.2504 38 1 5.7958 2.2867 0.3546 39 1 7.8178 3.3789 -0.0753 40 1 6.4265 5.6371 -2.4551 41 1 7.6540 7.4705 -3.5439 42 1 11.0325 6.7133 -1.0478 43 1 11.5915 3.1029 3.1215 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761662744.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:36 Heat of formation + Delta-G solvation = -108.176081 kcal Electronic energy + Delta-G solvation = -28887.016310 eV Core-core repulsion = 24461.955352 eV Total energy + Delta-G solvation = -4425.060958 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -48.20449 -40.66398 -39.84459 -38.68039 -36.47035 -35.70886 -34.96044 -34.05748 -32.37719 -31.63847 -30.00663 -29.31424 -27.93654 -25.48893 -25.00097 -23.20734 -22.40350 -21.65103 -20.71661 -20.35441 -18.65735 -18.29819 -17.87665 -17.05742 -16.60052 -16.32273 -16.01059 -15.50647 -15.22082 -15.09169 -14.94466 -14.70431 -14.51359 -14.27232 -14.08141 -13.68408 -13.59623 -13.47398 -13.18024 -12.91613 -12.87358 -12.54146 -12.28864 -12.23970 -12.13331 -11.93815 -11.77056 -11.64163 -11.36934 -10.98153 -10.72302 -10.51129 -10.09871 -9.88784 -9.77650 -9.48466 -9.45426 -9.09203 -8.93087 -7.83232 -7.00705 -6.56992 -4.14576 1.88665 2.15877 2.31822 2.51464 3.07970 3.08828 3.10368 3.14515 3.42175 3.87395 4.30874 4.40797 4.44599 4.61277 4.67406 4.87911 4.88543 4.91892 4.97933 5.01048 5.16441 5.34627 5.39373 5.49188 5.58137 5.61078 5.64587 5.77883 5.99915 6.04572 6.06082 6.23155 6.40075 6.63239 6.69184 6.94825 6.98081 7.09223 7.10899 7.17174 7.32806 7.69940 7.85792 7.86971 8.25254 8.79574 8.89068 9.50125 10.60192 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011695 B = 0.002785 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.602819 B =10053.182213 C =12044.328388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.113 3.887 3 N -0.728 5.728 4 C 0.511 3.489 5 O -0.531 6.531 6 C 0.148 3.852 7 H 0.116 0.884 8 C -0.161 4.161 9 N -0.731 5.731 10 C 0.709 3.291 11 O -0.585 6.585 12 N -0.660 5.660 13 C 0.085 3.915 14 C -0.063 4.063 15 C -0.224 4.224 16 C 0.123 3.877 17 F -0.152 7.152 18 C -0.256 4.256 19 C 0.154 3.846 20 O -0.171 6.171 21 C -0.391 4.391 22 H 0.094 0.906 23 C 0.042 3.958 24 N -0.860 5.860 25 Si 0.942 3.058 26 H -0.272 1.272 27 H -0.277 1.277 28 H -0.266 1.266 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.403 0.597 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.408 0.592 39 H 0.415 0.585 40 H 0.149 0.851 41 H 0.122 0.878 42 H 0.143 0.857 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.414 -4.084 -3.113 19.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.010 4.010 3 N -0.382 5.382 4 C 0.296 3.704 5 O -0.406 6.406 6 C 0.038 3.962 7 H 0.134 0.866 8 C -0.220 4.220 9 N -0.388 5.388 10 C 0.410 3.590 11 O -0.464 6.464 12 N -0.306 5.306 13 C -0.010 4.010 14 C -0.084 4.084 15 C -0.245 4.245 16 C 0.103 3.897 17 F -0.131 7.131 18 C -0.277 4.277 19 C 0.098 3.902 20 O -0.074 6.074 21 C -0.467 4.467 22 H 0.112 0.888 23 C -0.162 4.162 24 N -0.494 5.494 25 Si 0.767 3.233 26 H -0.198 1.198 27 H -0.202 1.202 28 H -0.191 1.191 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.237 0.763 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.245 0.755 39 H 0.251 0.749 40 H 0.167 0.833 41 H 0.140 0.860 42 H 0.160 0.840 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.399 -4.308 -3.183 19.163 hybrid contribution 1.175 0.120 0.641 1.344 sum -17.224 -4.187 -2.542 17.907 Atomic orbital electron populations 1.22010 0.94295 1.03348 1.02638 1.21330 0.94302 0.82739 1.02648 1.45965 1.06875 1.09213 1.76155 1.20758 0.82553 0.91385 0.75697 1.90735 1.55172 1.46057 1.48662 1.20506 0.81378 0.92474 1.01818 0.86638 1.22186 1.00853 1.02378 0.96573 1.44769 1.05239 1.21223 1.67613 1.15724 0.81688 0.82722 0.78858 1.90837 1.67852 1.34420 1.53326 1.42204 1.04113 1.26174 1.58093 1.16693 0.90009 0.95785 0.98547 1.20798 1.00364 0.94477 0.92737 1.20485 0.94146 1.03601 1.06228 1.17452 0.90814 0.87266 0.94133 1.91403 1.80577 1.58787 1.82359 1.20819 1.03072 1.01765 1.02033 1.18687 0.90582 0.90745 0.90212 1.83904 1.32293 1.47189 1.44029 1.21330 0.91265 1.19342 1.14791 0.88829 1.25277 0.99993 0.95821 0.95154 1.70014 1.38118 1.21037 1.20225 0.85684 0.79942 0.78416 0.79304 1.19790 1.20195 1.19062 0.90709 0.91864 0.91861 0.91353 0.91310 0.76260 0.91719 0.90171 0.91386 0.75533 0.74881 0.83340 0.86000 0.83978 0.91857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.63 10.03 37.16 0.37 -0.26 16 2 C 0.11 0.76 6.39 -4.04 -0.03 0.74 16 3 N -0.73 -5.35 5.45 -60.29 -0.33 -5.68 16 4 C 0.51 5.63 7.22 -10.99 -0.08 5.55 16 5 O -0.53 -7.88 15.84 5.55 0.09 -7.79 16 6 C 0.15 1.65 2.99 -69.08 -0.21 1.45 16 7 H 0.12 1.26 7.57 -51.93 -0.39 0.87 16 8 C -0.16 -1.52 9.38 37.16 0.35 -1.18 16 9 N -0.73 -10.37 4.95 -59.81 -0.30 -10.66 16 10 C 0.71 12.37 8.34 -86.92 -0.72 11.64 16 11 O -0.59 -11.15 13.17 5.29 0.07 -11.08 16 12 N -0.66 -12.56 5.30 -14.08 -0.07 -12.64 16 13 C 0.08 1.79 6.45 -83.44 -0.54 1.25 16 14 C -0.06 -1.23 8.72 -39.43 -0.34 -1.57 16 15 C -0.22 -4.22 10.02 -39.48 -0.40 -4.62 16 16 C 0.12 2.50 7.29 -39.43 -0.29 2.21 16 17 F -0.15 -2.95 17.26 2.25 0.04 -2.91 16 18 C -0.26 -5.65 9.14 -39.36 -0.36 -6.01 16 19 C 0.15 3.59 6.66 -38.94 -0.26 3.33 16 20 O -0.17 -4.51 9.17 0.01 0.00 -4.51 16 21 C -0.39 -10.43 9.49 30.88 0.29 -10.14 16 22 H 0.09 2.35 5.20 -52.49 -0.27 2.07 16 23 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 24 N -0.86 -23.80 13.67 55.48 0.76 -23.04 16 25 Si 0.94 19.96 29.55 -169.99 -5.02 14.94 16 26 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 27 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 28 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 29 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.40 1.83 7.89 -40.82 -0.32 1.51 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 0.42 7.57 -51.93 -0.39 0.03 16 38 H 0.41 5.75 7.81 -40.82 -0.32 5.43 16 39 H 0.42 7.78 8.36 -40.82 -0.34 7.44 16 40 H 0.15 2.81 5.78 -52.48 -0.30 2.51 16 41 H 0.12 1.98 8.06 -52.49 -0.42 1.55 16 42 H 0.14 3.13 5.63 -52.48 -0.30 2.84 16 43 H 0.27 6.95 8.31 -40.82 -0.34 6.62 16 LS Contribution 372.48 15.07 5.61 5.61 Total: -1.00 -32.26 372.48 -6.61 -38.87 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: -5.16 Total: 15.48 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: -2.30 Total: 3.40 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: 0.06 Total: -52.02 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: 0.16 Total: -23.38 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.04 Total: -2.91 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.26 -6.61 -38.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761662744.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.304 kcal (2) G-P(sol) polarization free energy of solvation -32.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds