Wall clock time and date at job start Sat Apr 11 2020 05:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46494 * 109.47348 * 2 1 4 4 C 1.34778 * 120.00137 * 180.02562 * 3 2 1 5 5 O 1.21273 * 120.00157 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.99777 * 180.02562 * 4 3 2 7 7 H 1.08998 * 109.47334 * 59.99942 * 6 4 3 8 8 C 1.53000 * 109.46984 * 299.99663 * 6 4 3 9 9 N 1.46506 * 109.46978 * 180.02562 * 6 4 3 10 10 C 1.34775 * 119.99879 * 204.99709 * 9 6 4 11 11 O 1.21594 * 120.00108 * 0.02562 * 10 9 6 12 12 N 1.34777 * 119.99570 * 179.97438 * 10 9 6 13 13 C 1.40140 * 119.99422 * 185.66932 * 12 10 9 14 14 C 1.38691 * 120.07889 * 24.77801 * 13 12 10 15 15 C 1.38200 * 120.02414 * 179.69765 * 14 13 12 16 16 C 1.38546 * 120.17110 * 0.59154 * 15 14 13 17 17 F 1.35095 * 119.92228 * 179.69955 * 16 15 14 18 18 C 1.38346 * 120.15273 * 359.68600 * 16 15 14 19 19 C 1.38746 * 119.97700 * 0.02562 * 18 16 15 20 20 O 1.35770 * 120.08911 * 179.97438 * 19 18 16 21 21 C 1.34803 * 116.99893 * 5.19979 * 20 19 18 22 22 H 1.08008 * 120.00086 * 354.97348 * 21 20 19 23 23 C 1.38640 * 120.00262 * 174.97943 * 21 20 19 24 24 N 1.31569 * 119.99896 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99973 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47437 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47321 * 120.00041 * 25 23 21 28 28 H 1.48504 * 109.47050 * 239.99527 * 25 23 21 29 29 H 1.09010 * 109.47205 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.47214 * 299.99602 * 1 2 3 31 31 H 1.08999 * 109.47513 * 59.99935 * 1 2 3 32 32 H 1.09004 * 109.47311 * 239.99916 * 2 1 3 33 33 H 1.08997 * 109.47272 * 120.00553 * 2 1 3 34 34 H 0.97000 * 119.99835 * 0.02562 * 3 2 1 35 35 H 1.08998 * 109.47313 * 300.00292 * 8 6 4 36 36 H 1.09003 * 109.47120 * 60.00362 * 8 6 4 37 37 H 1.09005 * 109.46685 * 180.02562 * 8 6 4 38 38 H 0.96997 * 119.99911 * 25.00015 * 9 6 4 39 39 H 0.96992 * 120.00140 * 5.40149 * 12 10 9 40 40 H 1.08009 * 119.98621 * 359.96979 * 14 13 12 41 41 H 1.07997 * 119.91214 * 180.27531 * 15 14 13 42 42 H 1.08002 * 120.01223 * 180.02562 * 18 16 15 43 43 H 0.96999 * 120.00271 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 3.3434 1.6274 -0.0005 5 8 4.1315 0.7056 -0.0005 6 6 3.8457 3.0483 0.0001 7 1 3.4828 3.5616 0.8905 8 6 3.3351 3.7702 -1.2486 9 7 5.3107 3.0483 -0.0013 10 6 5.9851 4.1058 0.4921 11 8 5.3775 5.0596 0.9388 12 7 7.3328 4.1055 0.4913 13 6 8.0340 5.1490 1.1104 14 6 7.4385 5.8784 2.1287 15 6 8.1333 6.9032 2.7428 16 6 9.4208 7.2132 2.3358 17 9 10.0932 8.2199 2.9354 18 6 10.0197 6.4940 1.3169 19 6 9.3301 5.4601 0.7001 20 8 9.9154 4.7531 -0.3004 21 6 11.2051 5.0337 -0.5746 22 1 11.7013 5.8461 -0.0645 23 6 11.8946 4.2794 -1.5115 24 7 11.2903 3.2894 -2.1327 25 14 13.6815 4.6686 -1.8919 26 1 14.1242 5.8201 -1.0653 27 1 14.5227 3.4846 -1.5829 28 1 13.8182 5.0110 -3.3305 29 1 -0.3634 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.3880 2.1184 0.0004 35 1 3.6980 3.2569 -2.1390 36 1 2.2451 3.7702 -1.2480 37 1 3.6988 4.7978 -1.2483 38 1 5.7954 2.2872 -0.3573 39 1 7.8174 3.3811 0.0656 40 1 6.4330 5.6426 2.4449 41 1 7.6695 7.4671 3.5385 42 1 11.0236 6.7373 1.0017 43 1 11.7728 2.7614 -2.7879 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761662746.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:39 Heat of formation + Delta-G solvation = -108.315971 kcal Electronic energy + Delta-G solvation = -28880.934602 eV Core-core repulsion = 24455.867578 eV Total energy + Delta-G solvation = -4425.067024 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -48.20421 -40.66519 -39.84544 -38.68212 -36.47202 -35.71016 -34.96254 -34.05587 -32.38016 -31.63876 -30.00673 -29.31503 -27.93556 -25.49116 -25.00299 -23.20705 -22.40236 -21.65102 -20.71698 -20.35521 -18.66224 -18.29455 -17.87710 -17.06132 -16.60198 -16.32267 -16.01075 -15.49721 -15.22495 -15.08294 -14.96092 -14.70795 -14.51345 -14.26595 -14.07925 -13.67847 -13.57365 -13.49292 -13.19335 -12.91966 -12.87260 -12.54606 -12.30759 -12.24064 -12.14553 -11.93885 -11.76924 -11.62607 -11.37804 -10.98520 -10.71655 -10.50205 -10.09878 -9.89404 -9.74685 -9.49636 -9.45403 -9.09296 -8.94000 -7.82935 -7.01437 -6.57369 -4.15069 1.88712 2.15897 2.31923 2.51377 3.07679 3.08216 3.10365 3.15536 3.41880 3.87287 4.30796 4.40776 4.44586 4.61332 4.67400 4.87876 4.90004 4.91851 4.97595 4.99691 5.15671 5.34319 5.39366 5.49217 5.57926 5.61134 5.64428 5.77828 5.99369 6.04595 6.06132 6.23023 6.39898 6.63229 6.69394 6.94859 6.98045 7.09266 7.10952 7.17197 7.32875 7.69965 7.85833 7.86761 8.25343 8.79492 8.88767 9.50128 10.59778 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011689 B = 0.002781 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.839250 B =10067.229252 C =12080.098929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.113 3.887 3 N -0.728 5.728 4 C 0.511 3.489 5 O -0.530 6.530 6 C 0.148 3.852 7 H 0.116 0.884 8 C -0.161 4.161 9 N -0.731 5.731 10 C 0.709 3.291 11 O -0.586 6.586 12 N -0.660 5.660 13 C 0.084 3.916 14 C -0.062 4.062 15 C -0.225 4.225 16 C 0.123 3.877 17 F -0.152 7.152 18 C -0.256 4.256 19 C 0.154 3.846 20 O -0.170 6.170 21 C -0.391 4.391 22 H 0.095 0.905 23 C 0.042 3.958 24 N -0.859 5.859 25 Si 0.942 3.058 26 H -0.266 1.266 27 H -0.275 1.275 28 H -0.275 1.275 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.403 0.597 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.408 0.592 39 H 0.415 0.585 40 H 0.149 0.851 41 H 0.122 0.878 42 H 0.143 0.857 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.566 -3.769 2.846 19.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.010 4.010 3 N -0.382 5.382 4 C 0.296 3.704 5 O -0.406 6.406 6 C 0.038 3.962 7 H 0.134 0.866 8 C -0.220 4.220 9 N -0.389 5.389 10 C 0.410 3.590 11 O -0.465 6.465 12 N -0.306 5.306 13 C -0.011 4.011 14 C -0.083 4.083 15 C -0.245 4.245 16 C 0.103 3.897 17 F -0.131 7.131 18 C -0.277 4.277 19 C 0.098 3.902 20 O -0.073 6.073 21 C -0.467 4.467 22 H 0.112 0.888 23 C -0.163 4.163 24 N -0.494 5.494 25 Si 0.767 3.233 26 H -0.190 1.190 27 H -0.200 1.200 28 H -0.201 1.201 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.237 0.763 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.245 0.755 39 H 0.251 0.749 40 H 0.167 0.833 41 H 0.140 0.860 42 H 0.160 0.840 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.556 -3.982 2.912 19.201 hybrid contribution 1.226 0.018 -0.549 1.344 sum -17.330 -3.964 2.363 17.934 Atomic orbital electron populations 1.22012 0.94295 1.03349 1.02635 1.21326 0.94300 0.82742 1.02652 1.45965 1.06874 1.09212 1.76168 1.20751 0.82553 0.91379 0.75709 1.90732 1.55167 1.46055 1.48635 1.20507 0.81376 0.92478 1.01817 0.86635 1.22189 1.00857 1.02367 0.96590 1.44770 1.05238 1.21125 1.67721 1.15733 0.81691 0.82714 0.78878 1.90838 1.67883 1.34535 1.53205 1.42209 1.04086 1.25953 1.58332 1.16710 0.90782 0.95350 0.98298 1.20800 1.00224 0.94435 0.92844 1.20488 0.94221 1.03793 1.05984 1.17456 0.90862 0.87214 0.94133 1.91404 1.80508 1.58617 1.82598 1.20824 1.03317 1.01382 1.02127 1.18717 0.91288 0.91328 0.88912 1.83915 1.27024 1.54153 1.42255 1.21391 0.84167 1.17148 1.24024 0.88771 1.25281 1.00212 0.95128 0.95642 1.70017 1.37090 1.17817 1.24452 0.85618 0.80218 0.78766 0.78727 1.18965 1.20048 1.20087 0.90709 0.91867 0.91860 0.91313 0.91352 0.76265 0.91729 0.91377 0.90177 0.75526 0.74862 0.83330 0.85997 0.83970 0.91894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.63 10.03 37.15 0.37 -0.26 16 2 C 0.11 0.76 6.39 -4.05 -0.03 0.74 16 3 N -0.73 -5.35 5.45 -60.30 -0.33 -5.67 16 4 C 0.51 5.63 7.22 -10.98 -0.08 5.55 16 5 O -0.53 -7.89 15.84 5.56 0.09 -7.80 16 6 C 0.15 1.65 2.99 -69.08 -0.21 1.44 16 7 H 0.12 1.26 7.58 -51.93 -0.39 0.86 16 8 C -0.16 -1.52 9.38 37.16 0.35 -1.17 16 9 N -0.73 -10.35 4.96 -59.81 -0.30 -10.65 16 10 C 0.71 12.34 8.33 -86.92 -0.72 11.61 16 11 O -0.59 -11.12 13.17 5.28 0.07 -11.05 16 12 N -0.66 -12.56 5.29 -14.07 -0.07 -12.63 16 13 C 0.08 1.77 6.45 -83.43 -0.54 1.23 16 14 C -0.06 -1.22 8.72 -39.43 -0.34 -1.56 16 15 C -0.22 -4.22 10.02 -39.48 -0.40 -4.62 16 16 C 0.12 2.50 7.29 -39.43 -0.29 2.21 16 17 F -0.15 -2.96 17.26 2.25 0.04 -2.92 16 18 C -0.26 -5.65 9.14 -39.35 -0.36 -6.01 16 19 C 0.15 3.58 6.66 -38.94 -0.26 3.33 16 20 O -0.17 -4.49 9.18 0.06 0.00 -4.49 16 21 C -0.39 -10.41 9.49 30.88 0.29 -10.12 16 22 H 0.09 2.36 5.20 -52.48 -0.27 2.09 16 23 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 24 N -0.86 -23.74 13.67 55.48 0.76 -22.98 16 25 Si 0.94 19.94 29.55 -169.99 -5.02 14.92 16 26 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 27 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 28 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 29 H 0.07 0.24 8.14 -51.92 -0.42 -0.18 16 30 H 0.06 0.22 8.14 -51.92 -0.42 -0.21 16 31 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.40 1.83 7.89 -40.82 -0.32 1.50 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.42 7.56 -51.93 -0.39 0.02 16 37 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.41 5.75 7.81 -40.82 -0.32 5.43 16 39 H 0.42 7.81 8.38 -40.82 -0.34 7.47 16 40 H 0.15 2.81 5.78 -52.48 -0.30 2.51 16 41 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 42 H 0.14 3.14 5.63 -52.49 -0.30 2.85 16 43 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 372.49 15.07 5.61 5.61 Total: -1.00 -32.20 372.49 -6.61 -38.82 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: -5.16 Total: 15.47 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: -2.30 Total: 3.38 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: 0.06 Total: -51.94 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: 0.16 Total: -23.34 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.04 Total: -2.92 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.20 -6.61 -38.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761662746.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.501 kcal (2) G-P(sol) polarization free energy of solvation -32.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds