Wall clock time and date at job start Sat Apr 11 2020 05:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46497 * 109.47269 * 2 1 4 4 C 1.46506 * 120.00073 * 270.00435 * 3 2 1 5 5 C 1.34777 * 120.00052 * 89.99823 * 3 2 1 6 6 O 1.21285 * 120.00085 * 0.02562 * 5 3 2 7 7 C 1.50699 * 120.00092 * 180.02562 * 5 3 2 8 8 N 1.46501 * 109.47369 * 179.97438 * 7 5 3 9 9 C 1.34773 * 120.00110 * 179.97438 * 8 7 5 10 10 O 1.21589 * 120.00361 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99901 * 180.27787 * 9 8 7 12 12 C 1.40138 * 120.00081 * 175.35645 * 11 9 8 13 13 C 1.38688 * 120.07459 * 34.59721 * 12 11 9 14 14 C 1.38200 * 120.02195 * 179.72486 * 13 12 11 15 15 C 1.38549 * 120.17243 * 0.55031 * 14 13 12 16 16 F 1.35101 * 119.92670 * 179.74446 * 15 14 13 17 17 C 1.38350 * 120.14875 * 359.72481 * 15 14 13 18 18 C 1.38734 * 119.97931 * 0.02562 * 17 15 14 19 19 O 1.35777 * 120.08833 * 180.02562 * 18 17 15 20 20 C 1.34803 * 116.99839 * 5.43667 * 19 18 17 21 21 H 1.08003 * 120.00175 * 354.94414 * 20 19 18 22 22 C 1.38635 * 120.00104 * 174.95430 * 20 19 18 23 23 N 1.31578 * 119.99819 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00339 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47036 * 89.99477 * 24 22 20 26 26 H 1.48501 * 109.47280 * 209.99881 * 24 22 20 27 27 H 1.48503 * 109.47169 * 330.00204 * 24 22 20 28 28 H 1.09010 * 109.47042 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47201 * 299.99500 * 1 2 3 30 30 H 1.09001 * 109.47521 * 59.99818 * 1 2 3 31 31 H 1.08996 * 109.47154 * 239.99989 * 2 1 3 32 32 H 1.09001 * 109.47521 * 120.00182 * 2 1 3 33 33 H 1.08997 * 109.46621 * 269.99563 * 4 3 2 34 34 H 1.08996 * 109.46858 * 29.99757 * 4 3 2 35 35 H 1.09000 * 109.46820 * 149.99415 * 4 3 2 36 36 H 1.09007 * 109.47520 * 59.99961 * 7 5 3 37 37 H 1.09001 * 109.47487 * 300.00000 * 7 5 3 38 38 H 0.97005 * 119.99663 * 0.02562 * 8 7 5 39 39 H 0.96998 * 120.00000 * 355.35605 * 11 9 8 40 40 H 1.08002 * 119.98910 * 359.97438 * 13 12 11 41 41 H 1.07996 * 119.91679 * 180.24909 * 14 13 12 42 42 H 1.07999 * 120.00662 * 180.02562 * 17 15 14 43 43 H 0.96996 * 120.00069 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 2.2429 2.0165 1.1672 6 8 2.0412 1.4447 2.2176 7 6 2.7447 3.4375 1.1672 8 7 2.9070 3.8981 2.5484 9 6 3.3487 5.1474 2.7947 10 8 3.6120 5.8924 1.8705 11 7 3.5033 5.5693 4.0654 12 6 4.0540 6.8320 4.3224 13 6 3.7970 7.8902 3.4635 14 6 4.3359 9.1364 3.7210 15 6 5.1431 9.3303 4.8303 16 9 5.6715 10.5494 5.0746 17 6 5.4087 8.2784 5.6888 18 6 4.8667 7.0259 5.4390 19 8 5.1256 5.9921 6.2803 20 6 5.8226 6.2735 7.3993 21 1 6.2184 7.2665 7.5536 22 6 6.0317 5.2882 8.3519 23 7 5.5493 4.0786 8.1640 24 14 6.9982 5.6779 9.9022 25 1 6.0689 6.1538 10.9583 26 1 7.6958 4.4538 10.3714 27 1 7.9981 6.7361 9.6093 28 1 -0.3634 -1.0278 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8899 33 1 3.2918 1.9006 -1.5834 34 1 1.5816 1.6877 -2.0283 35 1 2.0954 3.1410 -1.1384 36 1 2.0264 4.0766 0.6535 37 1 3.7048 3.4839 0.6532 38 1 2.6973 3.3037 3.2857 39 1 3.2335 4.9988 4.8020 40 1 3.1722 7.7412 2.5952 41 1 4.1314 9.9602 3.0533 42 1 6.0379 8.4322 6.5530 43 1 5.6952 3.3893 8.8307 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775671222.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:00 Heat of formation + Delta-G solvation = -98.058061 kcal Electronic energy + Delta-G solvation = -28791.791349 eV Core-core repulsion = 24367.169141 eV Total energy + Delta-G solvation = -4424.622207 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -48.22090 -40.58368 -39.91436 -38.67744 -36.47434 -36.18925 -34.38325 -34.01996 -32.37932 -31.78915 -29.43907 -28.78631 -27.32592 -26.83045 -25.46397 -23.50170 -22.39184 -21.61146 -20.51013 -19.67177 -18.48531 -18.29335 -17.76262 -17.03883 -16.74373 -16.49083 -16.12801 -15.49426 -15.20927 -14.98988 -14.92787 -14.72886 -14.33704 -14.25306 -14.03115 -13.70812 -13.55305 -13.47147 -13.25195 -13.19269 -13.01624 -12.82077 -12.47616 -12.28557 -12.25523 -12.11123 -11.63280 -11.38736 -11.33450 -10.93866 -10.71189 -10.52613 -10.15602 -9.90819 -9.74137 -9.44825 -9.12850 -9.05155 -8.93275 -7.84364 -7.07623 -6.56849 -4.15137 1.87907 2.15836 2.27881 2.41049 3.02604 3.08764 3.10088 3.14609 3.44455 3.87653 4.12948 4.38289 4.50321 4.66665 4.72077 4.81645 4.89386 4.99005 5.02698 5.06675 5.15201 5.17143 5.24234 5.30781 5.36136 5.57483 5.61941 5.77236 5.83744 6.06653 6.10648 6.23293 6.38687 6.61462 6.72250 6.93358 6.94424 6.96839 7.10151 7.17045 7.33445 7.69314 7.78299 7.86769 8.26686 8.82430 8.88906 9.50280 10.59956 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010932 B = 0.002824 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2560.645047 B = 9911.735746 C =12234.570954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.110 3.890 3 N -0.617 5.617 4 C 0.072 3.928 5 C 0.509 3.491 6 O -0.529 6.529 7 C 0.125 3.875 8 N -0.737 5.737 9 C 0.709 3.291 10 O -0.588 6.588 11 N -0.661 5.661 12 C 0.077 3.923 13 C -0.050 4.050 14 C -0.229 4.229 15 C 0.128 3.872 16 F -0.152 7.152 17 C -0.259 4.259 18 C 0.157 3.843 19 O -0.167 6.167 20 C -0.393 4.393 21 H 0.094 0.906 22 C 0.043 3.957 23 N -0.858 5.858 24 Si 0.942 3.058 25 H -0.272 1.272 26 H -0.277 1.277 27 H -0.266 1.266 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.410 0.590 39 H 0.413 0.587 40 H 0.143 0.857 41 H 0.122 0.878 42 H 0.143 0.857 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.155 -5.235 -16.198 18.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.012 4.012 3 N -0.352 5.352 4 C -0.071 4.071 5 C 0.296 3.704 6 O -0.405 6.405 7 C -0.003 4.003 8 N -0.397 5.397 9 C 0.410 3.590 10 O -0.467 6.467 11 N -0.308 5.308 12 C -0.018 4.018 13 C -0.070 4.070 14 C -0.250 4.250 15 C 0.108 3.892 16 F -0.131 7.131 17 C -0.279 4.279 18 C 0.101 3.899 19 O -0.070 6.070 20 C -0.469 4.469 21 H 0.112 0.888 22 C -0.162 4.162 23 N -0.492 5.492 24 Si 0.767 3.233 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.191 1.191 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.247 0.753 39 H 0.249 0.751 40 H 0.161 0.839 41 H 0.140 0.860 42 H 0.160 0.840 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.057 -5.381 -16.352 19.007 hybrid contribution 0.461 -0.167 1.386 1.470 sum -7.596 -5.548 -14.966 17.677 Atomic orbital electron populations 1.22132 0.95722 1.02363 1.02426 1.21459 0.94525 0.81798 1.03407 1.47819 1.66515 1.14620 1.06199 1.21914 1.01844 0.98122 0.85181 1.20671 0.77435 0.88615 0.83641 1.90729 1.51498 1.67460 1.30810 1.20851 1.02958 0.91516 0.84973 1.44716 1.72768 1.14196 1.08011 1.15723 0.78283 0.81493 0.83520 1.90865 1.57675 1.54868 1.43298 1.42134 1.64459 1.17719 1.06492 1.16648 1.02154 0.84807 0.98168 1.20665 0.98425 0.89550 0.98391 1.20475 1.06212 0.98411 0.99855 1.17461 0.96240 0.79642 0.95823 1.91408 1.85049 1.42245 1.94375 1.20835 1.10435 0.92229 1.04442 1.18825 0.91819 0.87922 0.91340 1.83941 1.64385 1.28936 1.29716 1.21352 1.31921 0.99011 0.94639 0.88816 1.25288 0.97497 0.94642 0.98800 1.70018 1.42096 1.01944 1.35125 0.85685 0.79230 0.78378 0.80051 1.19746 1.20194 1.19075 0.91477 0.92071 0.92584 0.90389 0.89610 0.91957 0.90693 0.90390 0.88545 0.88472 0.75250 0.75102 0.83935 0.85971 0.83977 0.91816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.14 10.24 37.15 0.38 -0.76 16 2 C 0.11 0.81 6.13 -4.05 -0.02 0.79 16 3 N -0.62 -5.12 2.87 -181.58 -0.52 -5.64 16 4 C 0.07 0.36 10.24 59.85 0.61 0.97 16 5 C 0.51 5.85 7.74 -10.99 -0.09 5.76 16 6 O -0.53 -7.96 15.25 5.55 0.08 -7.87 16 7 C 0.13 1.43 4.71 -5.19 -0.02 1.40 16 8 N -0.74 -10.79 5.53 -66.41 -0.37 -11.16 16 9 C 0.71 12.62 8.41 -86.92 -0.73 11.89 16 10 O -0.59 -11.48 13.76 5.29 0.07 -11.40 16 11 N -0.66 -12.64 5.20 -14.07 -0.07 -12.72 16 12 C 0.08 1.63 6.33 -83.44 -0.53 1.10 16 13 C -0.05 -0.96 8.70 -39.43 -0.34 -1.31 16 14 C -0.23 -4.28 10.02 -39.48 -0.40 -4.68 16 15 C 0.13 2.58 7.29 -39.43 -0.29 2.30 16 16 F -0.15 -2.93 17.26 2.25 0.04 -2.89 16 17 C -0.26 -5.70 9.14 -39.36 -0.36 -6.06 16 18 C 0.16 3.68 6.66 -38.94 -0.26 3.42 16 19 O -0.17 -4.43 9.32 0.04 0.00 -4.43 16 20 C -0.39 -10.50 9.49 30.88 0.29 -10.21 16 21 H 0.09 2.35 5.20 -52.48 -0.27 2.08 16 22 C 0.04 1.13 5.49 -17.51 -0.10 1.03 16 23 N -0.86 -23.85 13.67 55.48 0.76 -23.09 16 24 Si 0.94 19.98 29.55 -169.99 -5.02 14.96 16 25 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 26 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 27 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 28 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.39 8.07 -51.93 -0.42 -0.03 16 32 H 0.09 0.79 7.42 -51.93 -0.39 0.40 16 33 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 34 H 0.07 0.24 8.07 -51.93 -0.42 -0.18 16 35 H 0.08 0.35 6.44 -51.93 -0.33 0.02 16 36 H 0.10 0.96 7.40 -51.93 -0.38 0.57 16 37 H 0.10 1.05 8.11 -51.93 -0.42 0.63 16 38 H 0.41 6.03 7.46 -40.82 -0.30 5.73 16 39 H 0.41 7.69 8.59 -40.82 -0.35 7.34 16 40 H 0.14 2.66 6.19 -52.49 -0.32 2.33 16 41 H 0.12 1.96 8.06 -52.49 -0.42 1.53 16 42 H 0.14 3.13 5.64 -52.49 -0.30 2.83 16 43 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 371.84 15.07 5.60 5.60 Total: -1.00 -32.53 371.84 -6.44 -38.97 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -5.16 Total: 14.03 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: -1.85 Total: 5.64 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: -0.20 Total: -52.61 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: 0.16 Total: -23.71 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.04 Total: -2.89 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.53 -6.44 -38.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775671222.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.090 kcal (2) G-P(sol) polarization free energy of solvation -32.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds