Wall clock time and date at job start Sat Apr 11 2020 05:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47277 * 2 1 4 4 N 1.46497 * 109.47266 * 239.99367 * 2 1 3 5 5 C 1.34783 * 119.99757 * 85.00270 * 4 2 1 6 6 O 1.21588 * 120.00149 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99744 * 180.02562 * 5 4 2 8 8 C 1.40137 * 119.99840 * 185.55518 * 7 5 4 9 9 C 1.38695 * 120.07542 * 24.33166 * 8 7 5 10 10 C 1.38193 * 120.02004 * 179.77029 * 9 8 7 11 11 C 1.38549 * 120.17445 * 0.51451 * 10 9 8 12 12 F 1.35102 * 119.92235 * 179.76422 * 11 10 9 13 13 C 1.38337 * 120.14860 * 359.74080 * 11 10 9 14 14 C 1.38734 * 119.98132 * 0.02562 * 13 11 10 15 15 O 1.35776 * 120.08888 * 179.97438 * 14 13 11 16 16 C 1.34810 * 117.00320 * 5.48091 * 15 14 13 17 17 H 1.08001 * 119.99724 * 354.94937 * 16 15 14 18 18 C 1.38629 * 120.00375 * 174.95124 * 16 15 14 19 19 N 1.31572 * 120.00201 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00087 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47000 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47162 * 119.99918 * 20 18 16 23 23 H 1.48498 * 109.47000 * 239.99876 * 20 18 16 24 24 C 1.50703 * 109.47178 * 119.99357 * 2 1 3 25 25 O 1.21279 * 119.99810 * 110.73168 * 24 2 1 26 26 N 1.34774 * 120.00051 * 290.73871 * 24 2 1 27 27 C 1.46500 * 119.99891 * 185.41753 * 26 24 2 28 28 C 1.46501 * 120.00176 * 5.42268 * 26 24 2 29 29 H 1.08996 * 109.47057 * 305.16071 * 1 2 3 30 30 H 1.09003 * 109.46939 * 65.16096 * 1 2 3 31 31 H 1.08998 * 109.47190 * 185.15638 * 1 2 3 32 32 H 0.96996 * 120.00213 * 265.00030 * 4 2 1 33 33 H 0.96999 * 120.00136 * 5.27497 * 7 5 4 34 34 H 1.08002 * 119.98780 * 0.02562 * 9 8 7 35 35 H 1.08001 * 119.91327 * 180.23011 * 10 9 8 36 36 H 1.08004 * 120.00877 * 180.02562 * 13 11 10 37 37 H 0.96999 * 120.00248 * 180.02562 * 19 18 16 38 38 H 1.09002 * 109.47185 * 89.99819 * 27 26 24 39 39 H 1.08996 * 109.47443 * 209.99580 * 27 26 24 40 40 H 1.09005 * 109.47495 * 330.00361 * 27 26 24 41 41 H 1.09005 * 109.46865 * 0.17307 * 28 26 24 42 42 H 1.08995 * 109.47253 * 120.17717 * 28 26 24 43 43 H 1.08995 * 109.46704 * 240.17622 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8584 1.1614 -2.4117 7 7 2.5959 -0.6540 -3.4576 8 6 2.8407 0.0685 -4.6332 9 6 3.1181 1.4259 -4.5697 10 6 3.3639 2.1363 -5.7293 11 6 3.3237 1.4984 -6.9585 12 9 3.5602 2.1989 -8.0893 13 6 3.0426 0.1458 -7.0305 14 6 2.7995 -0.5745 -5.8700 15 8 2.5228 -1.9020 -5.9382 16 6 2.6109 -2.4841 -7.1509 17 1 2.8109 -1.8826 -8.0253 18 6 2.4445 -3.8547 -7.2757 19 7 2.2012 -4.5876 -6.2104 20 14 2.5672 -4.6613 -8.9562 21 1 2.8462 -3.6257 -9.9831 22 1 3.6670 -5.6591 -8.9472 23 1 1.2854 -5.3403 -9.2740 24 6 2.0324 -0.7103 1.2306 25 8 2.5850 -1.7849 1.1273 26 7 1.8673 -0.1514 2.4458 27 6 2.4587 -0.7821 3.6285 28 6 1.0965 1.0867 2.5841 29 1 -0.3633 0.5918 0.8401 30 1 -0.3633 0.4317 -0.9326 31 1 -0.3633 -1.0235 0.0924 32 1 2.2491 -1.6318 -1.1524 33 1 2.7534 -1.6108 -3.4348 34 1 3.1460 1.9271 -3.6134 35 1 3.5834 3.1925 -5.6776 36 1 3.0122 -0.3492 -7.9899 37 1 2.0852 -5.5466 -6.2977 38 1 3.4633 -0.3893 3.7857 39 1 1.8433 -0.5657 4.5017 40 1 2.5098 -1.8605 3.4781 41 1 0.7358 1.4014 1.6048 42 1 0.2477 0.9142 3.2458 43 1 1.7325 1.8656 3.0046 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000792330701.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:06 Heat of formation + Delta-G solvation = -86.965418 kcal Electronic energy + Delta-G solvation = -29252.194096 eV Core-core repulsion = 24828.052902 eV Total energy + Delta-G solvation = -4424.141194 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -48.20607 -40.79860 -39.93870 -38.69377 -36.46352 -35.96452 -35.05588 -34.06687 -32.38066 -31.14721 -29.34867 -28.34215 -27.80789 -26.83728 -25.48480 -24.01203 -22.44344 -21.61145 -20.50414 -19.78059 -18.55273 -18.30227 -17.77201 -17.11286 -16.69826 -16.29087 -16.07734 -15.51315 -15.21741 -15.05247 -14.96025 -14.71231 -14.28337 -14.20855 -14.05229 -13.68030 -13.52538 -13.48816 -13.23883 -13.16242 -12.93443 -12.58481 -12.51975 -12.32646 -12.15796 -12.02745 -11.66581 -11.62943 -11.38289 -10.98757 -10.72337 -10.50303 -10.08544 -9.89979 -9.75095 -9.50167 -9.17045 -9.03415 -8.94100 -7.83397 -7.01822 -6.57366 -4.15226 1.88130 2.15478 2.25831 2.41927 2.98555 3.07705 3.10132 3.15495 3.39582 3.87169 4.07866 4.40440 4.42921 4.65271 4.85930 4.89355 4.90884 4.92152 4.95976 4.99389 5.15304 5.18913 5.22856 5.41495 5.47732 5.57235 5.61763 5.77408 5.98213 6.02622 6.05658 6.22330 6.38842 6.62681 6.68872 6.91436 6.94494 6.98186 7.09199 7.16668 7.32330 7.69508 7.76878 7.86592 8.24342 8.78179 8.88674 9.49875 10.59726 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011665 B = 0.002990 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.699045 B = 9362.785045 C =11353.227477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.148 3.852 3 H 0.114 0.886 4 N -0.732 5.732 5 C 0.709 3.291 6 O -0.585 6.585 7 N -0.660 5.660 8 C 0.084 3.916 9 C -0.063 4.063 10 C -0.224 4.224 11 C 0.123 3.877 12 F -0.152 7.152 13 C -0.255 4.255 14 C 0.154 3.846 15 O -0.171 6.171 16 C -0.392 4.392 17 H 0.095 0.905 18 C 0.042 3.958 19 N -0.859 5.859 20 Si 0.942 3.058 21 H -0.266 1.266 22 H -0.275 1.275 23 H -0.275 1.275 24 C 0.512 3.488 25 O -0.529 6.529 26 N -0.619 5.619 27 C 0.084 3.916 28 C 0.061 3.939 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.409 0.591 33 H 0.415 0.585 34 H 0.150 0.850 35 H 0.122 0.878 36 H 0.143 0.857 37 H 0.271 0.729 38 H 0.056 0.944 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.093 0.907 42 H 0.066 0.934 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.974 8.833 16.514 18.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.039 3.961 3 H 0.132 0.868 4 N -0.390 5.390 5 C 0.410 3.590 6 O -0.464 6.464 7 N -0.306 5.306 8 C -0.011 4.011 9 C -0.084 4.084 10 C -0.245 4.245 11 C 0.103 3.897 12 F -0.131 7.131 13 C -0.276 4.276 14 C 0.098 3.902 15 O -0.074 6.074 16 C -0.467 4.467 17 H 0.112 0.888 18 C -0.162 4.162 19 N -0.494 5.494 20 Si 0.767 3.233 21 H -0.190 1.190 22 H -0.200 1.200 23 H -0.201 1.201 24 C 0.299 3.701 25 O -0.405 6.405 26 N -0.354 5.354 27 C -0.058 4.058 28 C -0.081 4.081 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.245 0.755 33 H 0.252 0.748 34 H 0.167 0.833 35 H 0.140 0.860 36 H 0.160 0.840 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.111 0.889 42 H 0.085 0.915 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.032 8.873 16.652 18.978 hybrid contribution 0.208 -1.170 -0.982 1.542 sum -1.823 7.703 15.670 17.555 Atomic orbital electron populations 1.22404 0.92947 1.03336 1.04151 1.20491 0.95523 0.97593 0.82517 0.86807 1.44794 1.71925 1.14698 1.07535 1.15727 0.78155 0.84967 0.80155 1.90830 1.57059 1.14196 1.84365 1.42214 1.67265 1.12225 1.08856 1.16714 1.10303 0.91787 0.82342 1.20820 0.96926 0.91569 0.99070 1.20488 1.12996 1.00260 0.90725 1.17458 1.01073 0.89549 0.81601 1.91406 1.92214 1.79101 1.50406 1.20819 1.14023 0.92883 0.99905 1.18709 0.94571 0.86160 0.90809 1.83917 1.74634 1.15230 1.33583 1.21387 1.51072 0.91102 0.83179 0.88775 1.25279 0.96244 0.95084 0.99642 1.70019 1.43975 1.06670 1.28690 0.85620 0.78351 0.79337 0.80026 1.18968 1.20047 1.20083 1.20776 0.78942 0.85652 0.84738 1.90716 1.42831 1.21046 1.85910 1.47609 1.54122 1.26520 1.07132 1.21654 0.97987 0.99745 0.86436 1.22210 0.95933 0.85751 1.04246 0.90532 0.90054 0.91673 0.75455 0.74839 0.83259 0.85998 0.83970 0.91889 0.92577 0.91094 0.90262 0.88901 0.91521 0.91686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.66 9.05 37.16 0.34 -1.33 16 2 C 0.15 1.72 2.14 -69.08 -0.15 1.57 16 3 H 0.11 1.28 6.99 -51.93 -0.36 0.91 16 4 N -0.73 -10.53 5.01 -59.81 -0.30 -10.83 16 5 C 0.71 12.35 8.34 -86.91 -0.72 11.63 16 6 O -0.59 -11.06 13.14 5.29 0.07 -10.99 16 7 N -0.66 -12.56 5.29 -14.07 -0.07 -12.63 16 8 C 0.08 1.76 6.46 -83.44 -0.54 1.22 16 9 C -0.06 -1.23 8.72 -39.43 -0.34 -1.57 16 10 C -0.22 -4.20 10.02 -39.48 -0.40 -4.60 16 11 C 0.12 2.49 7.29 -39.43 -0.29 2.20 16 12 F -0.15 -2.95 17.26 2.25 0.04 -2.91 16 13 C -0.26 -5.63 9.14 -39.36 -0.36 -5.99 16 14 C 0.15 3.58 6.66 -38.94 -0.26 3.32 16 15 O -0.17 -4.49 9.17 0.03 0.00 -4.49 16 16 C -0.39 -10.41 9.49 30.88 0.29 -10.12 16 17 H 0.09 2.36 5.20 -52.49 -0.27 2.09 16 18 C 0.04 1.11 5.49 -17.52 -0.10 1.02 16 19 N -0.86 -23.74 13.67 55.48 0.76 -22.98 16 20 Si 0.94 19.93 29.55 -169.99 -5.02 14.91 16 21 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 22 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 23 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 24 C 0.51 6.01 7.05 -10.99 -0.08 5.93 16 25 O -0.53 -8.04 15.38 5.56 0.09 -7.96 16 26 N -0.62 -5.26 3.27 -189.52 -0.62 -5.88 16 27 C 0.08 0.60 10.52 59.85 0.63 1.23 16 28 C 0.06 0.31 9.73 59.85 0.58 0.90 16 29 H 0.08 0.51 5.39 -51.93 -0.28 0.23 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.41 5.87 7.74 -40.82 -0.32 5.55 16 33 H 0.42 7.83 8.37 -40.82 -0.34 7.49 16 34 H 0.15 2.81 5.75 -52.49 -0.30 2.51 16 35 H 0.12 1.96 8.06 -52.49 -0.42 1.54 16 36 H 0.14 3.14 5.64 -52.48 -0.30 2.84 16 37 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.32 8.07 -51.93 -0.42 -0.10 16 40 H 0.08 0.69 7.35 -51.93 -0.38 0.31 16 41 H 0.09 0.47 3.98 -51.93 -0.21 0.27 16 42 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 43 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 LS Contribution 364.75 15.07 5.50 5.50 Total: -1.00 -32.18 364.75 -5.81 -37.98 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: -4.85 Total: 14.89 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: -1.39 Total: 5.40 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: -0.24 Total: -52.33 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: 0.16 Total: -23.45 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.04 Total: -2.91 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.18 -5.81 -37.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792330701.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.981 kcal (2) G-P(sol) polarization free energy of solvation -32.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds