Wall clock time and date at job start Sat Apr 11 2020 05:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47277 * 2 1 4 4 N 1.46497 * 109.47266 * 239.99367 * 2 1 3 5 5 C 1.34783 * 119.99757 * 85.00270 * 4 2 1 6 6 O 1.21588 * 120.00149 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99744 * 180.02562 * 5 4 2 8 8 C 1.40137 * 119.99840 * 185.55518 * 7 5 4 9 9 C 1.38695 * 120.07542 * 24.33166 * 8 7 5 10 10 C 1.38193 * 120.02004 * 179.77029 * 9 8 7 11 11 C 1.38549 * 120.17445 * 0.51451 * 10 9 8 12 12 F 1.35102 * 119.92235 * 179.76422 * 11 10 9 13 13 C 1.38337 * 120.14860 * 359.74080 * 11 10 9 14 14 C 1.38734 * 119.98132 * 0.02562 * 13 11 10 15 15 O 1.35776 * 120.08888 * 179.97438 * 14 13 11 16 16 C 1.34810 * 117.00320 * 5.48091 * 15 14 13 17 17 H 1.08001 * 119.99724 * 354.94937 * 16 15 14 18 18 C 1.38629 * 120.00375 * 174.95124 * 16 15 14 19 19 N 1.31572 * 120.00201 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00087 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47000 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47162 * 119.99918 * 20 18 16 23 23 H 1.48498 * 109.47000 * 239.99876 * 20 18 16 24 24 C 1.50703 * 109.47178 * 119.99357 * 2 1 3 25 25 O 1.21279 * 119.99810 * 110.73168 * 24 2 1 26 26 N 1.34774 * 120.00051 * 290.73871 * 24 2 1 27 27 C 1.46500 * 119.99891 * 185.41753 * 26 24 2 28 28 C 1.46501 * 120.00176 * 5.42268 * 26 24 2 29 29 H 1.08996 * 109.47057 * 305.16071 * 1 2 3 30 30 H 1.09003 * 109.46939 * 65.16096 * 1 2 3 31 31 H 1.08998 * 109.47190 * 185.15638 * 1 2 3 32 32 H 0.96996 * 120.00213 * 265.00030 * 4 2 1 33 33 H 0.96999 * 120.00136 * 5.27497 * 7 5 4 34 34 H 1.08002 * 119.98780 * 0.02562 * 9 8 7 35 35 H 1.08001 * 119.91327 * 180.23011 * 10 9 8 36 36 H 1.08004 * 120.00877 * 180.02562 * 13 11 10 37 37 H 0.96999 * 120.00248 * 180.02562 * 19 18 16 38 38 H 1.09002 * 109.47185 * 89.99819 * 27 26 24 39 39 H 1.08996 * 109.47443 * 209.99580 * 27 26 24 40 40 H 1.09005 * 109.47495 * 330.00361 * 27 26 24 41 41 H 1.09005 * 109.46865 * 0.17307 * 28 26 24 42 42 H 1.08995 * 109.47253 * 120.17717 * 28 26 24 43 43 H 1.08995 * 109.46704 * 240.17622 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8584 1.1614 -2.4117 7 7 2.5959 -0.6540 -3.4576 8 6 2.8407 0.0685 -4.6332 9 6 3.1181 1.4259 -4.5697 10 6 3.3639 2.1363 -5.7293 11 6 3.3237 1.4984 -6.9585 12 9 3.5602 2.1989 -8.0893 13 6 3.0426 0.1458 -7.0305 14 6 2.7995 -0.5745 -5.8700 15 8 2.5228 -1.9020 -5.9382 16 6 2.6109 -2.4841 -7.1509 17 1 2.8109 -1.8826 -8.0253 18 6 2.4445 -3.8547 -7.2757 19 7 2.2012 -4.5876 -6.2104 20 14 2.5672 -4.6613 -8.9562 21 1 2.8462 -3.6257 -9.9831 22 1 3.6670 -5.6591 -8.9472 23 1 1.2854 -5.3403 -9.2740 24 6 2.0324 -0.7103 1.2306 25 8 2.5850 -1.7849 1.1273 26 7 1.8673 -0.1514 2.4458 27 6 2.4587 -0.7821 3.6285 28 6 1.0965 1.0867 2.5841 29 1 -0.3633 0.5918 0.8401 30 1 -0.3633 0.4317 -0.9326 31 1 -0.3633 -1.0235 0.0924 32 1 2.2491 -1.6318 -1.1524 33 1 2.7534 -1.6108 -3.4348 34 1 3.1460 1.9271 -3.6134 35 1 3.5834 3.1925 -5.6776 36 1 3.0122 -0.3492 -7.9899 37 1 2.0852 -5.5466 -6.2977 38 1 3.4633 -0.3893 3.7857 39 1 1.8433 -0.5657 4.5017 40 1 2.5098 -1.8605 3.4781 41 1 0.7358 1.4014 1.6048 42 1 0.2477 0.9142 3.2458 43 1 1.7325 1.8656 3.0046 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000792330701.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:06 Heat of formation + Delta-G solvation = -109.595456 kcal Electronic energy + Delta-G solvation = -29253.175408 eV Core-core repulsion = 24828.052902 eV Total energy + Delta-G solvation = -4425.122506 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.79619 -42.02065 -41.19297 -40.25281 -38.12712 -36.75621 -36.24961 -35.57951 -34.30342 -32.23607 -31.02322 -29.65194 -28.63124 -27.54979 -27.38178 -25.03824 -24.00558 -23.17392 -21.88355 -20.72516 -20.13421 -19.85287 -19.32818 -18.41949 -17.79987 -17.41657 -17.09175 -16.96498 -16.79696 -16.56073 -16.24227 -16.04603 -15.93429 -15.46525 -15.34364 -15.24457 -14.89696 -14.83625 -14.40572 -14.02581 -13.96810 -13.78520 -13.54962 -13.42576 -13.32977 -13.18444 -13.05044 -12.85135 -12.61305 -12.36772 -12.31080 -12.12518 -11.64149 -11.39839 -11.06288 -11.00724 -10.83099 -10.33157 -9.75695 -9.52992 -8.68717 -8.50311 -6.16559 0.22999 0.48111 1.30802 1.36988 1.41253 1.42973 1.53506 1.91526 2.06953 2.14520 2.71168 3.04536 3.07088 3.20220 3.29368 3.47794 3.93624 3.96992 4.02177 4.17846 4.21779 4.36815 4.39793 4.50706 4.56858 4.59656 4.71639 4.76352 4.89764 4.92618 4.97442 4.99980 5.20517 5.22657 5.25420 5.29318 5.38659 5.44201 5.54722 5.84084 5.94354 6.08174 6.17634 6.80527 6.93817 6.94233 7.35114 7.63968 8.70346 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011665 B = 0.002990 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.699045 B = 9362.785045 C =11353.227477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.145 3.855 3 H 0.122 0.878 4 N -0.725 5.725 5 C 0.711 3.289 6 O -0.598 6.598 7 N -0.666 5.666 8 C 0.084 3.916 9 C -0.063 4.063 10 C -0.197 4.197 11 C 0.117 3.883 12 F -0.145 7.145 13 C -0.260 4.260 14 C 0.126 3.874 15 O -0.206 6.206 16 C -0.414 4.414 17 H 0.100 0.900 18 C -0.011 4.011 19 N -0.907 5.907 20 Si 1.013 2.987 21 H -0.255 1.255 22 H -0.268 1.268 23 H -0.269 1.269 24 C 0.508 3.492 25 O -0.574 6.574 26 N -0.612 5.612 27 C 0.080 3.920 28 C 0.053 3.947 29 H 0.113 0.887 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.408 0.592 33 H 0.413 0.587 34 H 0.163 0.837 35 H 0.160 0.840 36 H 0.136 0.864 37 H 0.274 0.726 38 H 0.061 0.939 39 H 0.104 0.896 40 H 0.058 0.942 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.219 11.165 17.562 20.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.140 0.860 4 N -0.381 5.381 5 C 0.412 3.588 6 O -0.479 6.479 7 N -0.311 5.311 8 C -0.012 4.012 9 C -0.083 4.083 10 C -0.217 4.217 11 C 0.097 3.903 12 F -0.124 7.124 13 C -0.281 4.281 14 C 0.072 3.928 15 O -0.111 6.111 16 C -0.490 4.490 17 H 0.117 0.883 18 C -0.210 4.210 19 N -0.544 5.544 20 Si 0.833 3.167 21 H -0.179 1.179 22 H -0.193 1.193 23 H -0.194 1.194 24 C 0.296 3.704 25 O -0.454 6.454 26 N -0.345 5.345 27 C -0.062 4.062 28 C -0.088 4.088 29 H 0.131 0.869 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.245 0.755 33 H 0.249 0.751 34 H 0.180 0.820 35 H 0.177 0.823 36 H 0.153 0.847 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.122 0.878 40 H 0.076 0.924 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.293 11.285 17.770 21.175 hybrid contribution 0.304 -1.611 -1.114 1.982 sum -1.989 9.674 16.656 19.364 Atomic orbital electron populations 1.22374 0.91395 1.03554 1.04780 1.20744 0.96665 0.97506 0.81411 0.86002 1.44846 1.71031 1.14694 1.07551 1.15737 0.77885 0.84836 0.80336 1.90798 1.57762 1.14634 1.84666 1.42284 1.67715 1.12132 1.09006 1.16991 1.09234 0.92523 0.82414 1.21038 0.96521 0.90769 1.00007 1.20897 1.09494 1.01824 0.89478 1.17454 1.01463 0.88909 0.82483 1.91426 1.92140 1.78686 1.50129 1.20892 1.13928 0.93925 0.99348 1.19066 0.95917 0.85661 0.92161 1.83900 1.76963 1.16637 1.33635 1.21787 1.51636 0.91819 0.83722 0.88254 1.26400 0.95652 0.95334 1.03641 1.70136 1.46187 1.07025 1.31046 0.84601 0.78553 0.78331 0.75254 1.17893 1.19342 1.19450 1.20782 0.78736 0.85207 0.85713 1.90701 1.45153 1.22955 1.86594 1.47750 1.53288 1.27107 1.06314 1.21799 0.99065 0.98485 0.86834 1.22485 0.96751 0.84565 1.05005 0.86866 0.91821 0.92271 0.75534 0.75140 0.82008 0.82279 0.84673 0.91695 0.92074 0.87792 0.92357 0.88914 0.89083 0.89891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 9.05 71.98 0.65 -2.33 16 2 C 0.15 3.24 2.14 44.25 0.09 3.33 16 3 H 0.12 2.53 6.99 -2.39 -0.02 2.52 16 4 N -0.72 -21.06 5.01 -461.40 -2.31 -23.37 16 5 C 0.71 24.78 8.34 179.05 1.49 26.28 16 6 O -0.60 -21.99 13.14 -3.99 -0.05 -22.04 16 7 N -0.67 -25.95 5.29 -316.69 -1.68 -27.63 16 8 C 0.08 3.57 6.46 38.22 0.25 3.81 16 9 C -0.06 -2.34 8.72 22.37 0.20 -2.14 16 10 C -0.20 -6.83 10.02 22.33 0.22 -6.60 16 11 C 0.12 4.54 7.29 22.37 0.16 4.70 16 12 F -0.15 -5.31 17.26 44.97 0.78 -4.53 16 13 C -0.26 -11.56 9.14 22.41 0.20 -11.36 16 14 C 0.13 6.01 6.66 22.68 0.15 6.16 16 15 O -0.21 -11.37 9.17 -22.82 -0.21 -11.58 16 16 C -0.41 -22.85 9.49 67.91 0.64 -22.21 16 17 H 0.10 5.15 5.20 -2.91 -0.02 5.14 16 18 C -0.01 -0.59 5.49 84.83 0.47 -0.12 16 19 N -0.91 -52.18 13.67 21.61 0.30 -51.89 16 20 Si 1.01 41.57 29.55 68.60 2.03 43.60 16 21 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 22 H -0.27 -10.61 7.11 99.48 0.71 -9.91 16 23 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 24 C 0.51 11.60 7.05 87.66 0.62 12.22 16 25 O -0.57 -17.82 15.38 -3.03 -0.05 -17.87 16 26 N -0.61 -9.16 3.27 -871.89 -2.85 -12.01 16 27 C 0.08 0.99 10.52 127.77 1.34 2.34 16 28 C 0.05 0.36 9.73 127.77 1.24 1.60 16 29 H 0.11 1.19 5.39 -2.39 -0.01 1.18 16 30 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.41 12.19 7.74 -92.71 -0.72 11.48 16 33 H 0.41 16.44 8.37 -92.71 -0.78 15.67 16 34 H 0.16 5.72 5.75 -2.91 -0.02 5.70 16 35 H 0.16 4.37 8.06 -2.91 -0.02 4.35 16 36 H 0.14 6.10 5.64 -2.91 -0.02 6.09 16 37 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 38 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.10 0.60 8.07 -2.39 -0.02 0.58 16 40 H 0.06 0.99 7.35 -2.38 -0.02 0.98 16 41 H 0.09 0.64 3.98 -2.38 -0.01 0.63 16 42 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 43 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 Total: -1.00 -72.18 364.75 3.30 -68.88 By element: Atomic # 1 Polarization: 43.15 SS G_CDS: -0.39 Total: 42.76 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: 7.74 Total: 15.68 kcal Atomic # 7 Polarization: -108.35 SS G_CDS: -6.55 Total: -114.90 kcal Atomic # 8 Polarization: -51.18 SS G_CDS: -0.31 Total: -51.49 kcal Atomic # 9 Polarization: -5.31 SS G_CDS: 0.78 Total: -4.53 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -72.18 3.30 -68.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792330701.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.718 kcal (2) G-P(sol) polarization free energy of solvation -72.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds