Wall clock time and date at job start Sat Apr 11 2020 05:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47585 * 2 1 4 4 N 1.46507 * 109.47130 * 239.99604 * 2 1 3 5 5 C 1.34775 * 119.99900 * 85.00206 * 4 2 1 6 6 O 1.21594 * 119.99846 * 0.02562 * 5 4 2 7 7 N 1.34777 * 120.00175 * 180.02562 * 5 4 2 8 8 C 1.39942 * 120.00133 * 185.30218 * 7 5 4 9 9 C 1.38962 * 120.03378 * 33.56194 * 8 7 5 10 10 C 1.38161 * 120.06420 * 179.97438 * 9 8 7 11 11 C 1.38168 * 120.13635 * 359.97438 * 10 9 8 12 12 C 1.38906 * 120.07245 * 359.97438 * 11 10 9 13 13 O 1.35752 * 120.03361 * 180.02562 * 12 11 10 14 14 C 1.34832 * 117.00075 * 185.84476 * 13 12 11 15 15 H 1.07991 * 120.00017 * 5.40522 * 14 13 12 16 16 C 1.38649 * 119.99696 * 185.40735 * 14 13 12 17 17 N 1.31551 * 120.00502 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99747 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47275 * 89.99623 * 18 16 14 20 20 H 1.48495 * 109.47283 * 209.99921 * 18 16 14 21 21 H 1.48501 * 109.47169 * 329.99667 * 18 16 14 22 22 C 1.38701 * 120.03248 * 213.53643 * 8 7 5 23 23 C 1.50701 * 109.47094 * 119.99978 * 2 1 3 24 24 O 1.21281 * 120.00186 * 120.00027 * 23 2 1 25 25 N 1.34783 * 119.99962 * 299.99905 * 23 2 1 26 26 C 1.46493 * 119.99946 * 180.02562 * 25 23 2 27 27 C 1.53005 * 109.46958 * 180.02562 * 26 25 23 28 28 F 1.39898 * 109.47150 * 180.02562 * 27 26 25 29 29 H 1.09000 * 109.46831 * 60.00621 * 1 2 3 30 30 H 1.08995 * 109.47209 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47204 * 300.00456 * 1 2 3 32 32 H 0.97003 * 120.00045 * 264.99851 * 4 2 1 33 33 H 0.97004 * 119.99240 * 5.29545 * 7 5 4 34 34 H 1.07997 * 119.96802 * 359.97438 * 9 8 7 35 35 H 1.07994 * 119.92777 * 180.02562 * 10 9 8 36 36 H 1.08000 * 119.95837 * 179.97438 * 11 10 9 37 37 H 0.97002 * 120.00491 * 180.02562 * 17 16 14 38 38 H 1.07999 * 120.07444 * 359.74702 * 22 8 7 39 39 H 0.97005 * 119.99465 * 359.97438 * 25 23 2 40 40 H 1.08995 * 109.47271 * 299.99888 * 26 25 23 41 41 H 1.09001 * 109.47402 * 59.99755 * 26 25 23 42 42 H 1.09008 * 109.46750 * 299.99763 * 27 26 25 43 43 H 1.08996 * 109.46920 * 59.99667 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1471 -0.0184 -2.3572 6 8 1.8584 1.1615 -2.4117 7 7 2.5958 -0.6539 -3.4577 8 6 2.8352 0.0668 -4.6332 9 6 3.2948 1.3764 -4.5647 10 6 3.5317 2.0883 -5.7248 11 6 3.3132 1.5008 -6.9561 12 6 2.8549 0.1917 -7.0312 13 8 2.6409 -0.3850 -8.2414 14 6 2.0823 -1.6121 -8.2446 15 1 1.7467 -2.0550 -7.3186 16 6 1.9390 -2.3054 -9.4367 17 7 2.3475 -1.7658 -10.5647 18 14 1.1645 -4.0053 -9.4412 19 1 -0.3037 -3.8798 -9.6254 20 1 1.7361 -4.8068 -10.5529 21 1 1.4453 -4.6807 -8.1488 22 6 2.6143 -0.5256 -5.8678 23 6 2.0323 -0.7104 1.2305 24 8 2.7296 -1.6965 1.1192 25 7 1.7067 -0.2499 2.4546 26 6 2.1955 -0.9401 3.6507 27 6 1.6848 -0.2193 4.9000 28 9 2.1520 -0.8781 6.0423 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 2.2491 -1.6319 -1.1526 33 1 2.7530 -1.6109 -3.4349 34 1 3.4669 1.8382 -3.6037 35 1 3.8893 3.1058 -5.6691 36 1 3.4990 2.0601 -7.8612 37 1 2.2468 -2.2507 -11.3988 38 1 2.2614 -1.5448 -5.9237 39 1 1.1493 0.5390 2.5435 40 1 1.8326 -1.9679 3.6510 41 1 3.2855 -0.9398 3.6506 42 1 2.0475 0.8087 4.9000 43 1 0.5949 -0.2201 4.8999 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800523202.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:27 Heat of formation + Delta-G solvation = -138.948945 kcal Electronic energy + Delta-G solvation = -28051.633334 eV Core-core repulsion = 23625.237965 eV Total energy + Delta-G solvation = -4426.395369 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.67285 -41.92880 -41.03662 -40.31014 -38.28837 -36.46344 -36.11231 -35.63743 -34.22193 -32.42975 -30.90052 -30.34890 -29.66345 -27.28759 -25.83974 -24.17542 -23.48646 -23.31803 -21.88130 -21.46845 -20.31465 -19.45149 -19.33047 -18.20125 -17.71753 -17.46584 -17.18084 -16.96183 -16.71630 -16.35858 -16.21482 -16.03080 -15.91674 -15.64040 -15.59059 -15.42305 -15.02102 -14.66768 -14.52371 -14.31885 -14.15304 -13.71061 -13.54225 -13.40644 -13.17919 -12.76066 -12.73915 -12.64280 -12.36732 -12.24336 -12.11321 -11.90223 -11.56364 -11.29789 -11.16681 -11.12895 -10.71417 -10.37818 -10.27086 -9.32040 -8.82952 -8.45075 -6.13511 0.46062 0.72979 1.29616 1.36333 1.37205 1.45660 1.53339 1.92447 2.06925 2.18678 2.86305 3.06520 3.19981 3.46737 3.51316 3.51885 3.85100 3.98175 4.08903 4.14151 4.15181 4.33648 4.35455 4.47337 4.60568 4.64635 4.64860 4.73157 4.77324 4.86755 5.04386 5.12646 5.19538 5.21341 5.26653 5.35220 5.48984 5.69634 5.70748 5.89355 6.03456 6.22311 6.29488 6.83795 6.99408 6.99951 7.37317 7.79458 8.77851 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018412 B = 0.001958 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.418730 B =14297.482441 C =15370.725913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.145 3.855 3 H 0.121 0.879 4 N -0.720 5.720 5 C 0.710 3.290 6 O -0.599 6.599 7 N -0.675 5.675 8 C 0.206 3.794 9 C -0.197 4.197 10 C -0.050 4.050 11 C -0.215 4.215 12 C 0.135 3.865 13 O -0.227 6.227 14 C -0.411 4.411 15 H 0.101 0.899 16 C -0.022 4.022 17 N -0.919 5.919 18 Si 1.017 2.983 19 H -0.265 1.265 20 H -0.272 1.272 21 H -0.251 1.251 22 C -0.261 4.261 23 C 0.520 3.480 24 O -0.569 6.569 25 N -0.705 5.705 26 C 0.087 3.913 27 C 0.056 3.944 28 F -0.227 7.227 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.107 0.893 32 H 0.412 0.588 33 H 0.418 0.582 34 H 0.132 0.868 35 H 0.155 0.845 36 H 0.120 0.880 37 H 0.272 0.728 38 H 0.127 0.873 39 H 0.424 0.576 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.105 0.895 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.317 3.077 31.242 31.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.037 3.963 3 H 0.139 0.861 4 N -0.377 5.377 5 C 0.410 3.590 6 O -0.478 6.478 7 N -0.322 5.322 8 C 0.111 3.889 9 C -0.218 4.218 10 C -0.068 4.068 11 C -0.235 4.235 12 C 0.084 3.916 13 O -0.133 6.133 14 C -0.487 4.487 15 H 0.118 0.882 16 C -0.220 4.220 17 N -0.557 5.557 18 Si 0.836 3.164 19 H -0.190 1.190 20 H -0.197 1.197 21 H -0.175 1.175 22 C -0.283 4.283 23 C 0.305 3.695 24 O -0.447 6.447 25 N -0.359 5.359 26 C -0.037 4.037 27 C 0.001 3.999 28 F -0.208 7.208 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.126 0.874 32 H 0.249 0.751 33 H 0.255 0.745 34 H 0.150 0.850 35 H 0.173 0.827 36 H 0.138 0.862 37 H 0.081 0.919 38 H 0.145 0.855 39 H 0.262 0.738 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.123 0.877 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.019 3.429 30.828 31.277 hybrid contribution -0.137 -1.450 -0.479 1.533 sum -4.156 1.979 30.348 30.695 Atomic orbital electron populations 1.22168 0.91080 1.03546 1.04658 1.20737 0.96703 0.97625 0.81272 0.86102 1.44749 1.71041 1.14718 1.07209 1.15806 0.77855 0.84799 0.80498 1.90922 1.57024 1.15178 1.84644 1.42439 1.68616 1.12232 1.08935 1.17178 0.95615 0.92323 0.83808 1.20870 1.07399 0.94390 0.99183 1.20919 0.96061 0.99942 0.89920 1.20477 1.10504 0.93211 0.99263 1.19588 0.93433 0.93132 0.85463 1.83983 1.71736 1.32374 1.25196 1.21763 1.38747 0.91896 0.96327 0.88151 1.26556 0.97754 1.04125 0.93537 1.70179 1.46332 1.40094 0.99066 0.84608 0.78096 0.74508 0.79146 1.19017 1.19708 1.17499 1.20791 1.14164 1.02486 0.90873 1.20634 0.79424 0.84014 0.85380 1.90736 1.39120 1.27845 1.87035 1.45423 1.53740 1.32707 1.04029 1.21872 1.00282 0.97468 0.84121 1.22211 1.01824 0.96630 0.79198 1.92773 1.91139 1.83950 1.52955 0.92217 0.91668 0.87444 0.75088 0.74485 0.84984 0.82708 0.86241 0.91867 0.85495 0.73764 0.91067 0.91485 0.87674 0.87357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.38 71.98 0.68 -1.05 16 2 C 0.15 2.16 2.98 44.24 0.13 2.29 16 3 H 0.12 1.80 7.58 -2.39 -0.02 1.78 16 4 N -0.72 -14.68 4.96 -461.39 -2.29 -16.97 16 5 C 0.71 19.85 8.26 179.05 1.48 21.33 16 6 O -0.60 -20.14 13.70 -4.01 -0.05 -20.19 16 7 N -0.67 -19.81 5.35 -317.23 -1.70 -21.50 16 8 C 0.21 7.73 6.27 38.13 0.24 7.97 16 9 C -0.20 -7.21 8.65 22.43 0.19 -7.02 16 10 C -0.05 -1.79 10.03 22.23 0.22 -1.57 16 11 C -0.21 -9.30 9.99 22.41 0.22 -9.08 16 12 C 0.14 6.76 6.64 22.56 0.15 6.91 16 13 O -0.23 -13.56 9.76 -22.77 -0.22 -13.79 16 14 C -0.41 -23.68 9.44 67.92 0.64 -23.04 16 15 H 0.10 5.28 5.30 -2.91 -0.02 5.27 16 16 C -0.02 -1.24 5.49 84.83 0.47 -0.78 16 17 N -0.92 -56.06 13.67 21.61 0.30 -55.76 16 18 Si 1.02 42.43 29.55 68.60 2.03 44.46 16 19 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16 20 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 21 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 22 C -0.26 -11.46 9.04 22.51 0.20 -11.26 16 23 C 0.52 7.55 7.22 87.66 0.63 8.18 16 24 O -0.57 -13.03 15.84 -3.03 -0.05 -13.08 16 25 N -0.70 -4.63 5.45 -463.06 -2.52 -7.15 16 26 C 0.09 0.68 6.13 86.38 0.53 1.21 16 27 C 0.06 0.16 7.67 71.98 0.55 0.71 16 28 F -0.23 -2.52 17.36 44.97 0.78 -1.74 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.11 0.36 7.56 -2.39 -0.02 0.34 16 32 H 0.41 7.72 7.81 -92.71 -0.72 7.00 16 33 H 0.42 9.89 8.83 -92.71 -0.82 9.07 16 34 H 0.13 4.59 6.43 -2.91 -0.02 4.58 16 35 H 0.16 4.31 8.06 -2.91 -0.02 4.29 16 36 H 0.12 5.02 8.06 -2.91 -0.02 5.00 16 37 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 38 H 0.13 5.52 5.72 -2.91 -0.02 5.50 16 39 H 0.42 -0.32 7.89 -92.70 -0.73 -1.06 16 40 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.11 -0.12 8.14 -2.38 -0.02 -0.14 16 43 H 0.11 -0.19 8.14 -2.39 -0.02 -0.21 16 Total: -1.00 -82.42 374.55 1.44 -80.98 By element: Atomic # 1 Polarization: 31.12 SS G_CDS: -1.18 Total: 29.94 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: 6.34 Total: -5.20 kcal Atomic # 7 Polarization: -95.18 SS G_CDS: -6.21 Total: -101.39 kcal Atomic # 8 Polarization: -46.73 SS G_CDS: -0.33 Total: -47.06 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.78 Total: -1.74 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -82.42 1.44 -80.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800523202.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.969 kcal (2) G-P(sol) polarization free energy of solvation -82.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds