Wall clock time and date at job start Sat Apr 11 2020 05:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35948 * 117.00499 * 2 1 4 4 C 1.38664 * 120.06477 * 359.72167 * 3 2 1 5 5 C 1.38176 * 119.97332 * 180.28026 * 4 3 2 6 6 C 1.38263 * 120.09586 * 359.97378 * 5 4 3 7 7 C 1.50702 * 119.93682 * 180.02562 * 6 5 4 8 8 N 1.46497 * 109.46996 * 270.02430 * 7 6 5 9 9 C 1.46507 * 119.99991 * 270.00067 * 8 7 6 10 10 C 1.34777 * 120.00455 * 90.00158 * 8 7 6 11 11 O 1.21584 * 119.99651 * 359.97438 * 10 8 7 12 12 N 1.34776 * 120.00517 * 180.02562 * 10 8 7 13 13 C 1.46495 * 119.99949 * 180.02562 * 12 10 8 14 14 C 1.50708 * 109.46971 * 179.97438 * 13 12 10 15 15 O 1.21292 * 119.99742 * 359.97438 * 14 13 12 16 16 N 1.34769 * 119.99919 * 179.97438 * 14 13 12 17 17 C 1.37101 * 120.00016 * 179.97438 * 16 14 13 18 18 H 1.08006 * 119.99909 * 359.97438 * 17 16 14 19 19 C 1.38947 * 120.00152 * 180.02562 * 17 16 14 20 20 N 1.31408 * 119.99997 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00086 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46873 * 59.99968 * 21 19 17 23 23 H 1.48496 * 109.47224 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.46923 * 300.00157 * 21 19 17 25 25 C 1.38254 * 120.12337 * 0.04707 * 6 5 4 26 26 C 1.38326 * 120.03416 * 359.95854 * 25 6 5 27 27 F 1.35098 * 120.05006 * 179.97438 * 26 25 6 28 28 H 1.09001 * 109.46836 * 300.00713 * 1 2 3 29 29 H 1.09001 * 109.46915 * 60.00028 * 1 2 3 30 30 H 1.08996 * 109.47572 * 179.97438 * 1 2 3 31 31 H 1.08008 * 120.01117 * 0.25210 * 4 3 2 32 32 H 1.07999 * 119.95322 * 179.97438 * 5 4 3 33 33 H 1.08994 * 109.47166 * 30.02267 * 7 6 5 34 34 H 1.08994 * 109.46843 * 150.02522 * 7 6 5 35 35 H 1.08997 * 109.47286 * 89.99939 * 9 8 7 36 36 H 1.08999 * 109.47254 * 210.00225 * 9 8 7 37 37 H 1.08998 * 109.46868 * 329.99801 * 9 8 7 38 38 H 0.96998 * 119.99585 * 359.97438 * 12 10 8 39 39 H 1.08998 * 109.47255 * 299.99144 * 13 12 10 40 40 H 1.09000 * 109.47610 * 59.99766 * 13 12 10 41 41 H 0.96997 * 120.00589 * 0.02562 * 16 14 13 42 42 H 0.96997 * 120.00063 * 180.02562 * 20 19 17 43 43 H 1.08004 * 119.98065 * 179.97438 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2925 2.3751 -0.0058 5 6 1.9219 3.6052 -0.0117 6 6 3.3026 3.6775 -0.0112 7 6 3.9853 5.0210 -0.0170 8 7 4.2068 5.4502 -1.4000 9 6 5.4487 5.0900 -2.0888 10 6 3.2682 6.1764 -2.0389 11 8 2.2374 6.4750 -1.4675 12 7 3.4718 6.5708 -3.3115 13 6 2.4518 7.3607 -4.0056 14 6 2.9213 7.6699 -5.4039 15 8 4.0019 7.2702 -5.7830 16 7 2.1405 8.3905 -6.2330 17 6 2.5678 8.6722 -7.5048 18 1 3.5304 8.3170 -7.8422 19 6 1.7631 9.4156 -8.3595 20 7 0.5926 9.8490 -7.9485 21 14 2.3456 9.8001 -10.0922 22 1 2.5767 8.5320 -10.8295 23 1 1.3119 10.6010 -10.7957 24 1 3.6119 10.5734 -10.0284 25 6 4.0580 2.5196 -0.0058 26 6 3.4334 1.2855 -0.0001 27 9 4.1713 0.1538 0.0047 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 0.2138 2.3201 -0.0063 32 1 1.3344 4.5114 -0.0166 33 1 3.3564 5.7503 0.4934 34 1 4.9431 4.9440 0.4974 35 1 5.3179 4.1354 -2.5984 36 1 5.6960 5.8607 -2.8188 37 1 6.2562 5.0060 -1.3616 38 1 4.2940 6.3323 -3.7675 39 1 1.5220 6.7937 -4.0513 40 1 2.2832 8.2920 -3.4650 41 1 1.2765 8.7104 -5.9297 42 1 0.0306 10.3677 -8.5452 43 1 5.1365 2.5788 -0.0058 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807552011.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:35 Heat of formation + Delta-G solvation = -111.288084 kcal Electronic energy + Delta-G solvation = -28595.266384 eV Core-core repulsion = 24170.070480 eV Total energy + Delta-G solvation = -4425.195904 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.95377 -40.51510 -39.93088 -38.38286 -37.81941 -35.43335 -34.49455 -33.71679 -31.47068 -31.24985 -30.95521 -28.38206 -27.63372 -26.93344 -25.41558 -24.18262 -22.99944 -21.82775 -19.81588 -19.63889 -18.61740 -18.30884 -17.82413 -17.14285 -17.01525 -16.47774 -16.26477 -15.82593 -15.54626 -15.28376 -15.04709 -14.74449 -14.63629 -14.52991 -14.38957 -13.91528 -13.86651 -13.52550 -13.23986 -13.13316 -12.71400 -12.51260 -12.47952 -12.15563 -12.00268 -11.83410 -11.78188 -11.63509 -11.37629 -11.35913 -11.11106 -10.51513 -10.32290 -10.01920 -9.63379 -9.18306 -8.97612 -8.63562 -8.57203 -8.36870 -8.10794 -6.52073 -3.94164 0.88492 0.93250 2.69233 2.82263 3.13067 3.20954 3.24598 3.31936 3.39770 3.74358 3.96413 4.03392 4.18295 4.39352 4.51843 4.65788 4.80676 4.87500 4.89785 4.99237 5.00015 5.07687 5.15066 5.16610 5.20912 5.35760 5.55816 5.61474 5.63344 5.81848 5.88717 5.95590 5.99630 6.06973 6.25193 6.36093 6.41731 6.74152 6.97086 6.97334 7.45136 7.91497 8.12366 8.44452 8.74112 9.03893 9.38736 9.86647 10.64777 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016247 B = 0.002132 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.942990 B =13131.142651 C =13690.401536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.312 6.312 3 C 0.096 3.904 4 C -0.184 4.184 5 C -0.059 4.059 6 C -0.116 4.116 7 C 0.178 3.822 8 N -0.631 5.631 9 C 0.076 3.924 10 C 0.708 3.292 11 O -0.595 6.595 12 N -0.723 5.723 13 C 0.128 3.872 14 C 0.428 3.572 15 O -0.599 6.599 16 N -0.549 5.549 17 C -0.305 4.305 18 H 0.105 0.895 19 C 0.026 3.974 20 N -0.895 5.895 21 Si 0.934 3.066 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.272 1.272 25 C -0.102 4.102 26 C 0.062 3.938 27 F -0.135 7.135 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.102 0.898 31 H 0.138 0.862 32 H 0.142 0.858 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.407 0.593 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.396 0.604 42 H 0.275 0.725 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.487 -14.219 18.600 23.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.225 6.225 3 C 0.050 3.950 4 C -0.203 4.203 5 C -0.078 4.078 6 C -0.118 4.118 7 C 0.055 3.945 8 N -0.368 5.368 9 C -0.067 4.067 10 C 0.409 3.591 11 O -0.474 6.474 12 N -0.382 5.382 13 C -0.001 4.001 14 C 0.214 3.786 15 O -0.485 6.485 16 N -0.183 5.183 17 C -0.435 4.435 18 H 0.123 0.877 19 C -0.177 4.177 20 N -0.535 5.535 21 Si 0.760 3.240 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.198 1.198 25 C -0.121 4.121 26 C 0.042 3.958 27 F -0.114 7.114 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.120 0.880 31 H 0.155 0.845 32 H 0.160 0.840 33 H 0.115 0.885 34 H 0.105 0.895 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.247 0.753 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.230 0.770 42 H 0.085 0.915 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.406 -14.341 18.603 23.612 hybrid contribution -0.086 0.120 -1.058 1.068 sum 2.320 -14.221 17.545 22.704 Atomic orbital electron populations 1.23128 0.77807 1.04256 1.01708 1.86117 1.21840 1.25913 1.88677 1.19057 0.90872 0.85640 0.99435 1.21196 1.00423 0.91429 1.07270 1.21155 0.94186 0.97696 0.94736 1.20099 0.93839 0.95270 1.02558 1.20140 1.00559 0.91762 0.82030 1.46984 1.18907 1.56809 1.14137 1.21792 0.85834 1.01133 0.97935 1.15774 0.83205 0.78690 0.81448 1.90863 1.27087 1.62371 1.67051 1.44948 1.23465 1.57623 1.12150 1.20788 0.91013 0.96175 0.92100 1.19764 0.86978 0.84978 0.86882 1.90487 1.23240 1.57781 1.77020 1.41778 1.18543 1.45713 1.12316 1.19676 1.04424 1.31570 0.87803 0.87745 1.25321 0.95303 0.96539 1.00530 1.69603 1.10018 1.36261 1.37629 0.85874 0.78273 0.78672 0.81158 1.19778 1.20853 1.19774 1.20879 1.00766 0.89715 1.00750 1.16900 0.85911 0.82942 1.10070 1.91491 1.76388 1.49067 1.94427 0.92363 0.92251 0.87956 0.84450 0.84013 0.88465 0.89512 0.92618 0.90759 0.90822 0.75340 0.90070 0.90001 0.77017 0.91532 0.84159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.45 10.36 -19.58 -0.20 -3.65 16 3 C 0.10 1.10 6.69 -39.17 -0.26 0.84 16 4 C -0.18 -1.90 9.04 -39.45 -0.36 -2.25 16 5 C -0.06 -0.65 9.69 -39.60 -0.38 -1.03 16 6 C -0.12 -1.20 5.46 -104.61 -0.57 -1.77 16 7 C 0.18 1.72 5.57 -5.19 -0.03 1.69 16 8 N -0.63 -7.49 2.86 -188.75 -0.54 -8.03 16 9 C 0.08 0.71 10.25 59.85 0.61 1.33 16 10 C 0.71 11.16 8.28 -86.92 -0.72 10.44 16 11 O -0.59 -10.71 15.43 5.29 0.08 -10.62 16 12 N -0.72 -12.14 5.39 -66.42 -0.36 -12.50 16 13 C 0.13 2.35 6.15 -5.19 -0.03 2.32 16 14 C 0.43 9.76 7.85 -10.99 -0.09 9.67 16 15 O -0.60 -15.18 15.24 5.55 0.08 -15.10 16 16 N -0.55 -13.52 5.29 -10.96 -0.06 -13.58 16 17 C -0.31 -8.25 9.68 -14.93 -0.14 -8.39 16 18 H 0.10 2.93 7.16 -52.48 -0.38 2.56 16 19 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 20 N -0.90 -23.77 13.05 55.50 0.72 -23.05 16 21 Si 0.93 20.44 29.55 -169.99 -5.02 15.41 16 22 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 24 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 25 C -0.10 -1.01 9.67 -39.54 -0.38 -1.39 16 26 C 0.06 0.72 7.31 -39.30 -0.29 0.43 16 27 F -0.14 -1.71 17.11 2.25 0.04 -1.68 16 28 H 0.06 0.31 7.67 -51.93 -0.40 -0.08 16 29 H 0.06 0.37 7.65 -51.93 -0.40 -0.03 16 30 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.14 1.11 6.30 -52.48 -0.33 0.78 16 32 H 0.14 1.65 7.56 -52.49 -0.40 1.25 16 33 H 0.10 1.01 7.36 -51.93 -0.38 0.63 16 34 H 0.09 0.58 7.84 -51.93 -0.41 0.17 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.75 6.36 -51.93 -0.33 0.42 16 37 H 0.07 0.48 7.89 -51.93 -0.41 0.07 16 38 H 0.41 6.74 5.17 -40.82 -0.21 6.53 16 39 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 40 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 41 H 0.40 9.38 7.90 -40.82 -0.32 9.06 16 42 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 43 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 LS Contribution 374.37 15.07 5.64 5.64 Total: -1.00 -32.91 374.37 -6.57 -39.47 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -5.21 Total: 14.04 kcal Atomic # 6 Polarization: 15.38 SS G_CDS: -1.75 Total: 13.64 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: -0.23 Total: -57.16 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: -0.04 Total: -29.38 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.91 -6.57 -39.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807552011.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.814 kcal (2) G-P(sol) polarization free energy of solvation -32.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds