Wall clock time and date at job start Sat Apr 11 2020 05:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47274 * 2 1 4 4 C 1.46498 * 119.99749 * 269.99772 * 3 2 1 5 5 C 1.50701 * 109.47037 * 270.00116 * 4 3 2 6 6 H 1.07997 * 120.00584 * 359.97438 * 5 4 3 7 7 C 1.37886 * 119.99980 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00124 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 119.99760 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.46896 * 90.00042 * 9 7 5 11 11 H 1.48500 * 109.46777 * 209.99823 * 9 7 5 12 12 H 1.48499 * 109.47101 * 330.00163 * 9 7 5 13 13 C 1.34771 * 119.99993 * 90.00056 * 3 2 1 14 14 O 1.21284 * 119.99630 * 179.97438 * 13 3 2 15 15 C 1.50698 * 120.00182 * 359.72257 * 13 3 2 16 16 N 1.46501 * 109.46825 * 180.27912 * 15 13 3 17 17 C 1.39814 * 119.99464 * 179.97438 * 16 15 13 18 18 C 1.38917 * 120.02489 * 0.02562 * 17 16 15 19 19 C 1.38188 * 120.08243 * 179.97438 * 18 17 16 20 20 C 1.38316 * 120.11486 * 0.04209 * 19 18 17 21 21 F 1.35106 * 119.97840 * 179.97438 * 20 19 18 22 22 C 1.39056 * 120.03847 * 359.97438 * 20 19 18 23 23 N 1.40071 * 120.03688 * 180.02562 * 22 20 19 24 24 C 1.34779 * 120.00239 * 204.47201 * 23 22 20 25 25 O 1.21518 * 119.99733 * 5.62991 * 24 23 22 26 26 O 1.34650 * 120.00410 * 185.64020 * 24 23 22 27 27 C 1.38708 * 119.92189 * 359.68697 * 22 20 19 28 28 H 1.08997 * 109.46712 * 60.00396 * 1 2 3 29 29 H 1.09002 * 109.46822 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47084 * 300.00013 * 1 2 3 31 31 H 1.09002 * 109.47430 * 239.99093 * 2 1 3 32 32 H 1.09002 * 109.47149 * 119.99772 * 2 1 3 33 33 H 1.09001 * 109.47308 * 29.99902 * 4 3 2 34 34 H 1.08999 * 109.47104 * 150.00296 * 4 3 2 35 35 H 0.96998 * 119.99946 * 180.02562 * 8 7 5 36 36 H 1.09003 * 109.47197 * 300.27358 * 15 13 3 37 37 H 1.08990 * 109.47310 * 60.27984 * 15 13 3 38 38 H 0.96999 * 120.00301 * 359.97438 * 16 15 13 39 39 H 1.08004 * 119.95702 * 359.97279 * 18 17 16 40 40 H 1.07995 * 119.94156 * 180.02562 * 19 18 17 41 41 H 0.97006 * 120.00094 * 24.46298 * 23 22 20 42 42 H 0.96691 * 117.00207 * 179.97438 * 26 24 23 43 43 H 1.08004 * 120.05888 * 180.29461 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.6859 1.8348 -1.7037 6 1 4.3430 1.2307 -1.0958 7 6 4.1496 2.3902 -2.8775 8 7 5.3915 2.1831 -3.2574 9 14 3.0132 3.4358 -3.9288 10 1 3.1159 4.8559 -3.5070 11 1 3.4070 3.3134 -5.3554 12 1 1.6137 2.9691 -3.7597 13 6 2.2430 2.0165 1.1672 14 8 2.6478 3.1598 1.1671 15 6 1.9859 1.3083 2.4723 16 7 2.2982 2.2077 3.5857 17 6 2.1363 1.7706 4.9038 18 6 1.6799 0.4835 5.1583 19 6 1.5200 0.0501 6.4606 20 6 1.8129 0.8965 7.5146 21 9 1.6550 0.4701 8.7869 22 6 2.2697 2.1860 7.2656 23 7 2.5669 3.0430 8.3330 24 6 2.5268 4.3785 8.1563 25 8 2.1346 4.8405 7.1030 26 8 2.9215 5.2009 9.1467 27 6 2.4375 2.6203 5.9590 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5140 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.5818 1.6876 -2.0284 34 1 2.0957 3.1410 -1.1385 35 1 5.7177 2.5741 -4.0829 36 1 0.9376 1.0143 2.5258 37 1 2.6158 0.4210 2.5344 38 1 2.6172 3.1064 3.4084 39 1 1.4498 -0.1793 4.3371 40 1 1.1654 -0.9512 6.6558 41 1 2.8014 2.6752 9.1995 42 1 2.8751 6.1510 8.9732 43 1 2.7968 3.6199 5.7630 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829692718.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:47 Heat of formation + Delta-G solvation = -151.074611 kcal Electronic energy + Delta-G solvation = -28795.185993 eV Core-core repulsion = 24368.264816 eV Total energy + Delta-G solvation = -4426.921177 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.71918 -41.92392 -41.04567 -39.99961 -37.63341 -37.12645 -36.63967 -35.32000 -34.82129 -32.03382 -31.44789 -30.46031 -29.47247 -27.35671 -25.17425 -24.43686 -23.97060 -23.36707 -22.05732 -20.52278 -19.99117 -19.13740 -18.92748 -18.56707 -18.36139 -17.73906 -17.49710 -17.22989 -16.75898 -16.69749 -16.40820 -16.34408 -15.84930 -15.45987 -14.85593 -14.73706 -14.70113 -14.66722 -14.61094 -14.25580 -13.89832 -13.74837 -13.65045 -13.48064 -13.29847 -13.16344 -12.75520 -12.60568 -12.53487 -12.36961 -12.09857 -12.03514 -11.86908 -11.75199 -11.46601 -10.84735 -10.80799 -10.76298 -9.48182 -9.42013 -8.36799 -8.35196 -6.40149 0.14698 0.38198 1.13387 1.31606 1.35731 1.43630 1.59667 1.66685 1.98136 2.29575 2.54923 2.72209 2.99491 3.31329 3.44413 3.51911 3.85617 4.08912 4.20334 4.28096 4.32539 4.34568 4.37752 4.45861 4.61993 4.67138 4.80844 4.89120 5.03153 5.05163 5.06038 5.12311 5.23706 5.32702 5.42542 5.47065 5.58924 5.62065 5.81084 6.12385 6.19425 6.25864 6.54549 6.61713 6.68373 7.18098 7.19632 7.31778 8.81645 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015719 B = 0.002431 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.911933 B =11515.579219 C =12672.687397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.093 3.907 3 N -0.593 5.593 4 C 0.225 3.775 5 C -0.535 4.535 6 H 0.031 0.969 7 C 0.011 3.989 8 N -0.945 5.945 9 Si 0.946 3.054 10 H -0.279 1.279 11 H -0.275 1.275 12 H -0.237 1.237 13 C 0.491 3.509 14 O -0.591 6.591 15 C 0.117 3.883 16 N -0.737 5.737 17 C 0.229 3.771 18 C -0.184 4.184 19 C -0.066 4.066 20 C -0.001 4.001 21 F -0.144 7.144 22 C 0.171 3.829 23 N -0.637 5.637 24 C 0.667 3.333 25 O -0.589 6.589 26 O -0.509 6.509 27 C -0.205 4.205 28 H 0.043 0.957 29 H 0.097 0.903 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.105 0.895 33 H 0.051 0.949 34 H 0.017 0.983 35 H 0.268 0.732 36 H 0.124 0.876 37 H 0.114 0.886 38 H 0.402 0.598 39 H 0.162 0.838 40 H 0.173 0.827 41 H 0.432 0.568 42 H 0.452 0.548 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.320 -6.379 23.849 27.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.028 4.028 3 N -0.324 5.324 4 C 0.102 3.898 5 C -0.573 4.573 6 H 0.049 0.951 7 C -0.187 4.187 8 N -0.585 5.585 9 Si 0.769 3.231 10 H -0.205 1.205 11 H -0.201 1.201 12 H -0.160 1.160 13 C 0.280 3.720 14 O -0.473 6.473 15 C -0.010 4.010 16 N -0.367 5.367 17 C 0.123 3.877 18 C -0.208 4.208 19 C -0.086 4.086 20 C -0.025 4.025 21 F -0.123 7.123 22 C 0.075 3.925 23 N -0.290 5.290 24 C 0.420 3.580 25 O -0.479 6.479 26 O -0.321 6.321 27 C -0.230 4.230 28 H 0.063 0.937 29 H 0.116 0.884 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.123 0.877 33 H 0.069 0.931 34 H 0.035 0.965 35 H 0.077 0.923 36 H 0.142 0.858 37 H 0.131 0.869 38 H 0.238 0.762 39 H 0.179 0.821 40 H 0.190 0.810 41 H 0.271 0.729 42 H 0.317 0.683 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -12.168 -5.992 23.240 26.908 hybrid contribution 0.674 1.741 -0.449 1.920 sum -11.494 -4.251 22.791 25.877 Atomic orbital electron populations 1.22182 0.93802 1.03904 1.02159 1.21900 0.95723 0.80621 1.04603 1.47996 1.63503 1.15418 1.05465 1.19320 0.94880 0.93025 0.82563 1.21555 0.97048 1.32055 1.06656 0.95097 1.25836 0.96648 0.97199 0.99013 1.70043 1.17422 1.46549 1.24524 0.85746 0.80603 0.78940 0.77844 1.20477 1.20068 1.15959 1.21161 0.77334 0.86661 0.86851 1.90651 1.48170 1.20741 1.87694 1.21272 1.04321 0.93128 0.82240 1.44610 1.73181 1.17232 1.01682 1.17777 0.93141 0.93260 0.83502 1.20837 1.07539 0.94428 0.97955 1.21018 0.97261 1.00317 0.89956 1.17098 1.12189 0.93115 0.80091 1.91443 1.94373 1.90042 1.36439 1.17144 0.99739 0.88819 0.86814 1.41675 1.70242 1.02307 1.14737 1.17772 0.76038 0.82706 0.81474 1.91084 1.51870 1.76433 1.28540 1.84145 1.80454 1.25164 1.42368 1.20554 1.10520 1.02029 0.89944 0.93744 0.88421 0.91738 0.90712 0.87732 0.93073 0.96522 0.92290 0.85832 0.86872 0.76182 0.82058 0.80953 0.72894 0.68348 0.85003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 10.24 71.98 0.74 -2.26 16 2 C 0.09 2.34 5.93 86.38 0.51 2.86 16 3 N -0.59 -22.18 2.46 -826.16 -2.03 -24.20 16 4 C 0.22 10.57 4.23 85.63 0.36 10.93 16 5 C -0.53 -30.83 9.94 25.60 0.25 -30.58 16 6 H 0.03 1.99 8.06 -2.91 -0.02 1.97 16 7 C 0.01 0.65 5.47 84.66 0.46 1.11 16 8 N -0.95 -59.46 13.96 21.45 0.30 -59.16 16 9 Si 0.95 44.10 27.47 68.60 1.88 45.99 16 10 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 11 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 12 H -0.24 -9.81 6.54 99.48 0.65 -9.16 16 13 C 0.49 18.43 7.74 87.66 0.68 19.11 16 14 O -0.59 -28.49 15.25 -3.04 -0.05 -28.54 16 15 C 0.12 2.87 3.94 85.63 0.34 3.21 16 16 N -0.74 -20.32 5.71 -343.12 -1.96 -22.28 16 17 C 0.23 5.47 6.65 38.16 0.25 5.72 16 18 C -0.18 -3.13 9.31 22.42 0.21 -2.93 16 19 C -0.07 -1.00 10.01 22.28 0.22 -0.77 16 20 C 0.00 -0.02 7.30 22.48 0.16 0.14 16 21 F -0.14 -2.60 16.80 44.97 0.76 -1.85 16 22 C 0.17 3.79 6.44 38.13 0.25 4.04 16 23 N -0.64 -11.98 5.32 -429.32 -2.28 -14.26 16 24 C 0.67 13.86 8.93 129.79 1.16 15.01 16 25 O -0.59 -16.92 14.30 19.78 0.28 -16.64 16 26 O -0.51 -6.46 13.48 -55.59 -0.75 -7.21 16 27 C -0.21 -5.37 8.56 22.51 0.19 -5.18 16 28 H 0.04 0.97 8.14 -2.39 -0.02 0.96 16 29 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.06 1.06 7.20 -2.39 -0.02 1.04 16 31 H 0.07 2.09 8.07 -2.39 -0.02 2.07 16 32 H 0.10 1.88 6.45 -2.39 -0.02 1.87 16 33 H 0.05 2.21 7.13 -2.39 -0.02 2.19 16 34 H 0.02 0.86 6.85 -2.39 -0.02 0.84 16 35 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 36 H 0.12 2.14 6.96 -2.39 -0.02 2.13 16 37 H 0.11 2.24 7.21 -2.39 -0.02 2.22 16 38 H 0.40 13.35 7.45 -92.71 -0.69 12.65 16 39 H 0.16 1.81 6.72 -2.91 -0.02 1.79 16 40 H 0.17 1.47 8.06 -2.91 -0.02 1.45 16 41 H 0.43 5.78 8.55 -92.70 -0.79 4.99 16 42 H 0.45 1.85 9.11 -74.06 -0.67 1.17 16 43 H 0.13 4.07 5.79 -2.91 -0.02 4.05 16 Total: -1.00 -84.39 368.38 0.84 -83.55 By element: Atomic # 1 Polarization: 25.30 SS G_CDS: -1.10 Total: 24.19 kcal Atomic # 6 Polarization: 14.62 SS G_CDS: 5.79 Total: 20.41 kcal Atomic # 7 Polarization: -113.93 SS G_CDS: -5.97 Total: -119.90 kcal Atomic # 8 Polarization: -51.87 SS G_CDS: -0.51 Total: -52.38 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.76 Total: -1.85 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.88 Total: 45.99 kcal Total: -84.39 0.84 -83.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829692718.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.529 kcal (2) G-P(sol) polarization free energy of solvation -84.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds