Wall clock time and date at job start Sat Apr 11 2020 05:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.46915 * 2 1 4 4 C 1.46492 * 120.00271 * 265.15078 * 3 2 1 5 5 C 1.50707 * 109.46848 * 275.44111 * 4 3 2 6 6 H 1.07997 * 119.99986 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99779 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00157 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00032 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46834 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47030 * 120.00094 * 9 7 5 12 12 H 1.48495 * 109.47673 * 240.00537 * 9 7 5 13 13 C 1.34784 * 119.99751 * 85.14978 * 3 2 1 14 14 O 1.21276 * 120.00100 * 5.30109 * 13 3 2 15 15 C 1.50695 * 119.99782 * 185.30745 * 13 3 2 16 16 H 1.08997 * 109.47438 * 45.08058 * 15 13 3 17 17 C 1.53009 * 109.47167 * 285.08082 * 15 13 3 18 18 O 1.42895 * 109.46879 * 302.66521 * 17 15 13 19 19 N 1.46499 * 109.47232 * 165.08427 * 15 13 3 20 20 C 1.34776 * 119.99949 * 205.00167 * 19 15 13 21 21 O 1.21515 * 120.00261 * 359.97438 * 20 19 15 22 22 C 1.48165 * 119.99807 * 180.02562 * 20 19 15 23 23 C 1.39231 * 119.70370 * 179.72760 * 22 20 19 24 24 C 1.38662 * 119.11755 * 179.74862 * 23 22 20 25 25 C 1.38495 * 118.52154 * 0.51128 * 24 23 22 26 26 C 1.38897 * 119.33434 * 359.72449 * 25 24 23 27 27 F 1.35099 * 119.58519 * 180.02562 * 26 25 24 28 28 N 1.31708 * 120.83407 * 0.02843 * 26 25 24 29 29 H 1.08995 * 109.46868 * 64.96672 * 1 2 3 30 30 H 1.08997 * 109.46729 * 184.96615 * 1 2 3 31 31 H 1.08998 * 109.47334 * 304.96429 * 1 2 3 32 32 H 1.08993 * 109.47546 * 240.00090 * 2 1 3 33 33 H 1.09003 * 109.46909 * 119.99740 * 2 1 3 34 34 H 1.08998 * 109.47326 * 35.43844 * 4 3 2 35 35 H 1.09001 * 109.47549 * 155.44173 * 4 3 2 36 36 H 0.97001 * 120.00003 * 179.97438 * 8 7 5 37 37 H 1.09001 * 109.46583 * 62.65950 * 17 15 13 38 38 H 1.09000 * 109.46974 * 182.66054 * 17 15 13 39 39 H 0.96702 * 114.00191 * 180.02562 * 18 17 15 40 40 H 0.96998 * 119.99809 * 24.99492 * 19 15 13 41 41 H 1.08002 * 120.44255 * 359.97088 * 23 22 20 42 42 H 1.08004 * 120.73847 * 180.21362 * 24 23 22 43 43 H 1.08001 * 120.33760 * 179.75206 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3636 2.0362 -1.2641 5 6 3.7773 1.6790 -1.6451 6 1 4.3603 1.0296 -1.0089 7 6 4.3263 2.1815 -2.8058 8 7 3.6165 2.9727 -3.5801 9 14 6.0788 1.7395 -3.2777 10 1 6.6576 0.8414 -2.2463 11 1 6.0780 1.0476 -4.5917 12 1 6.8938 2.9773 -3.3704 13 6 2.1499 2.0495 1.1631 14 8 1.9567 1.4788 2.2156 15 6 2.5369 3.5059 1.1557 16 1 1.9533 4.0332 0.4011 17 6 4.0265 3.6362 0.8312 18 8 4.7884 2.8934 1.7850 19 7 2.2715 4.0884 2.4734 20 6 2.0495 5.4124 2.5926 21 8 2.0699 6.1231 1.6071 22 6 1.7816 6.0017 3.9254 23 6 1.5587 7.3710 4.0421 24 6 1.3039 7.9088 5.2946 25 6 1.2916 7.0598 6.3887 26 6 1.5271 5.7040 6.2007 27 9 1.5158 4.8712 7.2644 28 7 1.7615 5.2199 4.9984 29 1 -0.3633 0.4348 -0.9311 30 1 -0.3633 -1.0238 0.0890 31 1 -0.3634 0.5889 0.8422 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6812 1.7011 -2.0452 35 1 2.2805 3.1168 -1.1481 36 1 4.0029 3.3265 -4.3965 37 1 4.2160 3.2455 -0.1686 38 1 4.3168 4.6860 0.8723 39 1 5.7439 2.9314 1.6407 40 1 2.2555 3.5212 3.2601 41 1 1.5803 8.0054 3.1683 42 1 1.1240 8.9669 5.4148 43 1 1.1003 7.4480 7.3782 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845270087.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:54 Heat of formation + Delta-G solvation = -117.874874 kcal Electronic energy + Delta-G solvation = -30055.054861 eV Core-core repulsion = 25629.573332 eV Total energy + Delta-G solvation = -4425.481529 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.25327 -40.80836 -39.73347 -38.50714 -36.23975 -35.37100 -34.16837 -33.11854 -32.83327 -31.46223 -30.80579 -28.69696 -27.16113 -25.17954 -23.86568 -23.65833 -23.09905 -22.12140 -20.50834 -19.20723 -18.11046 -17.92643 -17.01769 -16.67702 -16.49048 -16.39899 -16.37207 -16.01758 -15.59153 -15.11582 -15.01398 -14.53527 -14.33285 -14.17484 -14.02008 -13.61515 -13.43762 -13.16209 -13.08072 -12.72007 -12.60540 -12.53224 -12.25768 -11.92174 -11.56765 -11.48394 -11.13265 -11.00790 -10.85392 -10.62267 -10.48840 -10.45840 -10.17729 -9.84370 -9.79823 -9.56795 -9.38663 -9.02287 -8.78359 -8.62328 -7.77943 -6.27015 -4.34082 0.22866 0.70996 2.55496 2.90070 3.15734 3.21982 3.25090 3.27308 3.34041 3.52413 3.91246 4.06573 4.25612 4.46850 4.54362 4.61566 4.74066 4.98971 5.04528 5.14924 5.36841 5.44821 5.57986 5.62966 5.65455 5.81420 5.87624 5.92563 6.05763 6.17438 6.27080 6.37122 6.42262 6.63081 6.65811 6.73899 7.08321 7.12173 7.46151 7.67993 7.72223 7.95486 8.11656 8.20004 8.31371 8.70704 8.90954 9.32238 10.78867 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014281 B = 0.003265 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.129648 B = 8573.247691 C = 9433.255298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.118 3.882 3 N -0.591 5.591 4 C 0.229 3.771 5 C -0.538 4.538 6 H 0.066 0.934 7 C 0.066 3.934 8 N -0.884 5.884 9 Si 0.894 3.106 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.282 1.282 13 C 0.524 3.476 14 O -0.560 6.560 15 C 0.135 3.865 16 H 0.124 0.876 17 C 0.051 3.949 18 O -0.567 6.567 19 N -0.678 5.678 20 C 0.567 3.433 21 O -0.530 6.530 22 C 0.126 3.874 23 C -0.124 4.124 24 C -0.053 4.053 25 C -0.176 4.176 26 C 0.308 3.692 27 F -0.109 7.109 28 N -0.486 5.486 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.038 0.962 35 H 0.040 0.960 36 H 0.267 0.733 37 H 0.116 0.884 38 H 0.046 0.954 39 H 0.374 0.626 40 H 0.421 0.579 41 H 0.160 0.840 42 H 0.154 0.846 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.142 8.442 14.018 16.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.006 4.006 3 N -0.321 5.321 4 C 0.109 3.891 5 C -0.577 4.577 6 H 0.084 0.916 7 C -0.138 4.138 8 N -0.522 5.522 9 Si 0.721 3.279 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.207 1.207 13 C 0.310 3.690 14 O -0.440 6.440 15 C 0.027 3.973 16 H 0.142 0.858 17 C -0.028 4.028 18 O -0.371 6.371 19 N -0.330 5.330 20 C 0.350 3.650 21 O -0.406 6.406 22 C -0.012 4.012 23 C -0.145 4.145 24 C -0.079 4.079 25 C -0.197 4.197 26 C 0.152 3.848 27 F -0.088 7.088 28 N -0.203 5.203 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.133 0.867 38 H 0.065 0.935 39 H 0.220 0.780 40 H 0.260 0.740 41 H 0.177 0.823 42 H 0.172 0.828 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -4.677 7.645 13.792 16.448 hybrid contribution 1.376 0.365 0.011 1.424 sum -3.301 8.010 13.803 16.297 Atomic orbital electron populations 1.22121 0.96879 1.01337 1.01860 1.21233 0.93204 0.83416 1.02702 1.48122 1.62708 1.13466 1.07825 1.19590 0.96355 0.93472 0.79638 1.21501 0.98191 1.30834 1.07164 0.91560 1.24978 0.98226 0.94731 0.95900 1.69930 1.36912 1.31781 1.13552 0.86492 0.84170 0.78479 0.78725 1.19499 1.20751 1.20747 1.19981 0.76872 0.88091 0.84026 1.90589 1.52849 1.69343 1.31190 1.21007 0.97280 0.93227 0.85800 0.85830 1.22980 0.88580 0.95358 0.95872 1.86459 1.21594 1.74475 1.54603 1.45630 1.68567 1.07650 1.11202 1.17727 0.77842 0.82655 0.86739 1.90826 1.52195 1.60559 1.37061 1.20955 0.97993 0.90876 0.91416 1.22231 0.97627 0.95007 0.99605 1.21541 0.94459 1.00907 0.90944 1.22060 1.03435 0.92124 1.02092 1.18071 0.97905 0.85905 0.82894 1.91661 1.93351 1.72267 1.51485 1.66881 1.13916 1.41219 0.98260 0.92607 0.92321 0.92882 0.90051 0.91173 0.94390 0.94221 0.92363 0.86656 0.93543 0.77980 0.74009 0.82262 0.82791 0.82947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 10.21 37.16 0.38 -2.24 16 2 C 0.12 2.18 6.14 -4.04 -0.02 2.16 16 3 N -0.59 -12.39 2.47 -175.06 -0.43 -12.82 16 4 C 0.23 5.24 4.65 -5.19 -0.02 5.22 16 5 C -0.54 -13.19 6.96 -34.44 -0.24 -13.43 16 6 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 7 C 0.07 1.65 5.46 -17.82 -0.10 1.55 16 8 N -0.88 -23.29 13.29 55.43 0.74 -22.55 16 9 Si 0.89 19.61 29.54 -169.99 -5.02 14.59 16 10 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 12 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 13 C 0.52 11.20 6.53 -10.98 -0.07 11.13 16 14 O -0.56 -12.88 15.49 5.56 0.09 -12.79 16 15 C 0.13 2.67 1.93 -69.08 -0.13 2.54 16 16 H 0.12 2.50 6.24 -51.93 -0.32 2.18 16 17 C 0.05 0.99 6.59 37.16 0.25 1.23 16 18 O -0.57 -10.66 13.12 -35.23 -0.46 -11.13 16 19 N -0.68 -12.43 4.93 -55.78 -0.27 -12.71 16 20 C 0.57 9.65 7.78 -12.18 -0.09 9.56 16 21 O -0.53 -9.92 15.98 5.35 0.09 -9.84 16 22 C 0.13 1.76 6.75 -83.01 -0.56 1.20 16 23 C -0.12 -1.28 9.63 -39.06 -0.38 -1.66 16 24 C -0.05 -0.38 10.16 -39.33 -0.40 -0.78 16 25 C -0.18 -1.39 10.09 -39.24 -0.40 -1.79 16 26 C 0.31 3.62 8.41 -17.36 -0.15 3.47 16 27 F -0.11 -1.31 17.29 2.25 0.04 -1.27 16 28 N -0.49 -6.98 9.56 -10.13 -0.10 -7.07 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.08 1.47 8.03 -51.93 -0.42 1.06 16 33 H 0.07 1.33 7.50 -51.93 -0.39 0.94 16 34 H 0.04 0.91 8.11 -51.93 -0.42 0.49 16 35 H 0.04 0.94 5.56 -51.93 -0.29 0.65 16 36 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 37 H 0.12 2.49 4.43 -51.93 -0.23 2.26 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.37 5.40 9.12 45.56 0.42 5.82 16 40 H 0.42 7.99 7.04 -40.82 -0.29 7.70 16 41 H 0.16 1.50 7.64 -52.49 -0.40 1.10 16 42 H 0.15 0.53 8.06 -52.48 -0.42 0.11 16 43 H 0.15 0.72 8.06 -52.49 -0.42 0.29 16 LS Contribution 372.73 15.07 5.62 5.62 Total: -1.00 -30.85 372.73 -6.09 -36.94 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: -4.42 Total: 14.88 kcal Atomic # 6 Polarization: 20.10 SS G_CDS: -1.94 Total: 18.16 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: -0.07 Total: -55.15 kcal Atomic # 8 Polarization: -33.46 SS G_CDS: -0.29 Total: -33.76 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.27 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.59 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.85 -6.09 -36.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845270087.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.935 kcal (2) G-P(sol) polarization free energy of solvation -30.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds