Wall clock time and date at job start Sat Apr 11 2020 05:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46418 * 110.99872 * 2 1 4 4 C 1.54232 * 109.16446 * 38.51292 * 3 2 1 5 5 N 1.45204 * 107.72680 * 60.48834 * 4 3 2 6 6 S 1.65596 * 121.37359 * 211.67774 * 5 4 3 7 7 O 1.42101 * 104.27978 * 20.36096 * 6 5 4 8 8 O 1.42104 * 104.27713 * 148.21348 * 6 5 4 9 9 C 1.81391 * 104.45557 * 264.28769 * 6 5 4 10 10 C 1.52999 * 109.47461 * 183.61030 * 9 6 5 11 11 C 1.53004 * 109.47099 * 179.97438 * 10 9 6 12 12 C 1.50703 * 109.46968 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00075 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99895 * 180.02562 * 12 11 10 15 15 N 1.31520 * 120.00153 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99937 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.46981 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47127 * 120.00050 * 16 14 12 19 19 H 1.48506 * 109.46991 * 239.99982 * 16 14 12 20 20 C 1.46575 * 117.25502 * 31.66427 * 5 4 3 21 21 C 1.50171 * 109.75615 * 271.20915 * 20 5 4 22 22 C 1.38556 * 118.61259 * 226.03624 * 21 20 5 23 23 C 1.38710 * 118.86331 * 184.33128 * 22 21 20 24 24 C 1.38096 * 118.59081 * 359.82259 * 23 22 21 25 25 N 1.31336 * 120.97389 * 358.91594 * 24 23 22 26 26 C 1.33878 * 122.75239 * 0.53970 * 25 24 23 27 27 H 1.09002 * 109.47381 * 285.50980 * 1 2 3 28 28 H 1.09000 * 109.47647 * 45.51864 * 1 2 3 29 29 H 1.09004 * 109.47141 * 165.51391 * 1 2 3 30 30 H 1.09000 * 109.52756 * 158.41662 * 3 2 1 31 31 H 1.09002 * 109.52557 * 278.54275 * 3 2 1 32 32 H 1.08997 * 109.80774 * 180.02562 * 4 3 2 33 33 H 1.08998 * 109.80514 * 300.87997 * 4 3 2 34 34 H 1.09000 * 109.46950 * 303.61126 * 9 6 5 35 35 H 1.08999 * 109.47513 * 63.60759 * 9 6 5 36 36 H 1.08995 * 109.47471 * 300.00242 * 10 9 6 37 37 H 1.09002 * 109.46924 * 60.00353 * 10 9 6 38 38 H 1.09000 * 109.47156 * 300.00000 * 11 10 9 39 39 H 1.08994 * 109.47207 * 59.99780 * 11 10 9 40 40 H 0.96999 * 119.99657 * 180.02562 * 15 14 12 41 41 H 1.08999 * 109.41854 * 31.29944 * 20 5 4 42 42 H 1.09003 * 109.42240 * 151.17769 * 20 5 4 43 43 H 1.07997 * 120.57206 * 4.61141 * 22 21 20 44 44 H 1.07997 * 120.70407 * 179.80009 * 23 22 21 45 45 H 1.07995 * 119.51598 * 178.89518 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9936 1.3669 0.0000 4 6 1.1108 2.2481 0.9072 5 7 1.1635 1.6940 2.2483 6 16 -0.1285 1.8048 3.2782 7 8 -1.2389 2.0409 2.4235 8 8 -0.0494 0.6259 4.0677 9 6 0.2211 3.2711 4.2871 10 6 -0.8683 3.4310 5.3494 11 6 -0.5730 4.6675 6.2008 12 6 -1.6457 4.8245 7.2475 13 1 -2.4572 4.1138 7.3000 14 6 -1.5918 5.8762 8.1375 15 7 -0.6038 6.7420 8.0734 16 14 -2.9219 6.0713 9.4346 17 1 -3.9135 4.9747 9.2955 18 1 -2.3079 6.0158 10.7856 19 1 -3.6020 7.3789 9.2533 20 6 2.4072 1.0323 2.6528 21 6 2.3545 -0.4208 2.2775 22 6 2.7497 -1.3626 3.2137 23 6 2.7898 -2.6988 2.8435 24 6 2.4297 -3.0384 1.5543 25 7 2.0361 -2.1228 0.6990 26 6 1.9690 -0.8223 1.0099 27 1 -0.3634 0.2748 0.9902 28 1 -0.3634 0.7200 -0.7332 29 1 -0.3634 -0.9950 -0.2571 30 1 3.0160 1.3648 0.3779 31 1 1.9817 1.7617 -1.0159 32 1 1.4922 3.2692 0.9144 33 1 0.0834 2.2398 0.5433 34 1 1.1893 3.1546 4.7742 35 1 0.2394 4.1550 3.6496 36 1 -1.8364 3.5475 4.8624 37 1 -0.8864 2.5471 5.9871 38 1 0.3951 4.5505 6.6879 39 1 -0.5544 5.5515 5.5635 40 1 -0.5658 7.4816 8.6998 41 1 3.2501 1.5063 2.1498 42 1 2.5316 1.1229 3.7319 43 1 3.0176 -1.0622 4.2158 44 1 3.0965 -3.4574 3.5483 45 1 2.4726 -4.0722 1.2447 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867899875.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:15 Heat of formation + Delta-G solvation = -12.551201 kcal Electronic energy + Delta-G solvation = -28264.852571 eV Core-core repulsion = 24410.151395 eV Total energy + Delta-G solvation = -3854.701176 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.15810 -38.42163 -37.08153 -35.87681 -35.63400 -34.75091 -32.72264 -32.24955 -31.58799 -28.79689 -27.88893 -26.93937 -26.17198 -23.83562 -23.23999 -22.28766 -21.17841 -20.62886 -18.98857 -17.89940 -17.38990 -17.03419 -16.67915 -16.50010 -16.06219 -15.68529 -15.50802 -14.88588 -14.77105 -14.51796 -14.41723 -14.16440 -13.62144 -13.32661 -13.18749 -12.98899 -12.67436 -12.61090 -12.34230 -12.11725 -12.03587 -12.01259 -11.86556 -11.78127 -11.72484 -11.51823 -11.30378 -10.97942 -10.90491 -10.47484 -10.14983 -10.03345 -9.87053 -9.58744 -9.32913 -9.28952 -9.09135 -8.46140 -8.29314 -6.10804 -4.14080 0.25854 0.87046 1.12824 2.57664 3.18299 3.25919 3.33637 3.38500 3.58794 3.84476 4.07813 4.24567 4.37634 4.38605 4.48143 4.63496 4.71999 4.79441 4.89354 4.97553 5.02064 5.06853 5.13110 5.22875 5.23310 5.25878 5.27343 5.35992 5.39334 5.53240 5.67014 5.78449 5.79826 5.89914 6.04369 6.13536 6.25751 6.28845 6.35423 6.57681 6.78774 6.92304 7.50498 7.59613 7.86989 7.95749 8.26995 8.92269 9.51061 11.00423 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021513 B = 0.002771 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.224267 B =10101.503601 C =10600.422566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.496 5.496 3 C 0.056 3.944 4 C 0.073 3.927 5 N -1.004 6.004 6 S 2.592 3.408 7 O -0.956 6.956 8 O -0.950 6.950 9 C -0.606 4.606 10 C -0.106 4.106 11 C 0.031 3.969 12 C -0.527 4.527 13 H 0.059 0.941 14 C 0.058 3.942 15 N -0.895 5.895 16 Si 0.894 3.106 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.283 1.283 20 C 0.167 3.833 21 C -0.175 4.175 22 C -0.043 4.043 23 C -0.189 4.189 24 C 0.119 3.881 25 N -0.491 5.491 26 C 0.324 3.676 27 H 0.036 0.964 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.077 0.923 33 H 0.102 0.898 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.021 0.979 39 H 0.021 0.979 40 H 0.261 0.739 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.139 0.861 44 H 0.137 0.863 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.455 -13.818 -15.970 23.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.215 5.215 3 C -0.073 4.073 4 C -0.054 4.054 5 N -0.839 5.839 6 S 2.690 3.310 7 O -0.947 6.947 8 O -0.941 6.941 9 C -0.738 4.738 10 C -0.145 4.145 11 C -0.007 4.007 12 C -0.565 4.565 13 H 0.077 0.923 14 C -0.144 4.144 15 N -0.534 5.534 16 Si 0.722 3.278 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.209 1.209 20 C 0.041 3.959 21 C -0.182 4.182 22 C -0.070 4.070 23 C -0.209 4.209 24 C -0.042 4.042 25 N -0.202 5.202 26 C 0.097 3.903 27 H 0.054 0.946 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.119 0.881 32 H 0.095 0.905 33 H 0.120 0.880 34 H 0.145 0.855 35 H 0.147 0.853 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.039 0.961 39 H 0.039 0.961 40 H 0.071 0.929 41 H 0.115 0.885 42 H 0.111 0.889 43 H 0.157 0.843 44 H 0.155 0.845 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 9.659 -14.670 -17.195 24.580 hybrid contribution -0.088 1.331 2.487 2.822 sum 9.571 -13.339 -14.708 22.042 Atomic orbital electron populations 1.22426 0.83602 1.03487 1.01337 1.57580 1.08943 1.11464 1.43491 1.22779 0.98565 0.85352 1.00653 1.22257 1.03464 0.97780 0.81887 1.57766 1.30358 1.70460 1.25316 1.05741 0.73214 0.77411 0.74640 1.93553 1.49164 1.87156 1.64792 1.93584 1.85493 1.44071 1.70915 1.30571 1.10451 1.19399 1.13417 1.21516 0.94238 1.03598 0.95175 1.19065 0.97418 0.90475 0.93756 1.21282 1.09420 1.10910 1.14881 0.92308 1.25023 0.95936 0.95707 0.97701 1.69966 1.31294 1.14724 1.37413 0.86498 0.81835 0.78129 0.81368 1.19570 1.20891 1.20887 1.20018 0.87150 0.87723 1.01045 1.21032 1.05816 0.97741 0.93661 1.21423 0.94185 0.92524 0.98886 1.22141 1.03394 0.96846 0.98529 1.22514 0.93487 0.98505 0.89665 1.67451 1.15063 1.01259 1.36380 1.19544 0.94518 0.89740 0.86535 0.94561 0.89972 0.90675 0.89853 0.88068 0.90521 0.88012 0.85491 0.85307 0.91684 0.91505 0.96107 0.96089 0.92904 0.88516 0.88919 0.84317 0.84497 0.82701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 8.16 60.06 0.49 0.93 16 2 N -0.50 -5.63 4.69 -180.31 -0.85 -6.48 16 3 C 0.06 0.46 5.81 -3.44 -0.02 0.44 16 4 C 0.07 0.65 5.59 -4.09 -0.02 0.63 16 5 N -1.00 -11.01 2.20 -116.13 -0.26 -11.26 16 6 S 2.59 38.00 4.87 -107.50 -0.52 37.47 16 7 O -0.96 -16.13 15.63 -57.54 -0.90 -17.03 16 8 O -0.95 -16.46 17.29 -57.54 -0.99 -17.45 16 9 C -0.61 -9.09 6.18 37.16 0.23 -8.86 16 10 C -0.11 -2.12 5.16 -26.73 -0.14 -2.25 16 11 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 12 C -0.53 -14.69 9.11 -34.44 -0.31 -15.01 16 13 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 15 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 16 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 17 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 C 0.17 1.59 4.96 -5.41 -0.03 1.56 16 21 C -0.18 -2.01 5.42 -104.68 -0.57 -2.57 16 22 C -0.04 -0.45 9.70 -39.29 -0.38 -0.83 16 23 C -0.19 -1.75 10.14 -39.46 -0.40 -2.15 16 24 C 0.12 1.23 11.17 -17.82 -0.20 1.03 16 25 N -0.49 -6.36 10.28 -12.28 -0.13 -6.49 16 26 C 0.32 4.08 5.65 -153.51 -0.87 3.21 16 27 H 0.04 0.49 5.05 -51.93 -0.26 0.23 16 28 H 0.08 0.77 7.49 -51.93 -0.39 0.39 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.08 0.61 5.96 -51.93 -0.31 0.30 16 31 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.10 1.01 5.15 -51.93 -0.27 0.74 16 34 H 0.13 1.66 8.14 -51.92 -0.42 1.23 16 35 H 0.13 1.72 8.14 -51.92 -0.42 1.30 16 36 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.10 0.66 6.51 -51.93 -0.34 0.32 16 42 H 0.09 0.79 7.70 -51.93 -0.40 0.39 16 43 H 0.14 1.16 7.93 -52.49 -0.42 0.74 16 44 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 45 H 0.16 1.12 8.06 -52.49 -0.42 0.69 16 LS Contribution 367.82 15.07 5.54 5.54 Total: -1.00 -36.08 367.82 -11.41 -47.49 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -6.57 Total: -0.91 kcal Atomic # 6 Polarization: -19.26 SS G_CDS: -2.45 Total: -21.71 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: -0.49 Total: -49.76 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -1.89 Total: -34.48 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 38.00 SS G_CDS: -0.52 Total: 37.47 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.08 -11.41 -47.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867899875.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.939 kcal (2) G-P(sol) polarization free energy of solvation -36.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds