Wall clock time and date at job start Sat Apr 11 2020 05:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46418 * 110.99872 * 2 1 4 4 C 1.54232 * 109.16446 * 38.51292 * 3 2 1 5 5 N 1.45204 * 107.72680 * 60.48834 * 4 3 2 6 6 S 1.65596 * 121.37359 * 211.67774 * 5 4 3 7 7 O 1.42101 * 104.27978 * 20.36096 * 6 5 4 8 8 O 1.42104 * 104.27713 * 148.21348 * 6 5 4 9 9 C 1.81391 * 104.45557 * 264.28769 * 6 5 4 10 10 C 1.52999 * 109.47461 * 183.61030 * 9 6 5 11 11 C 1.53004 * 109.47099 * 179.97438 * 10 9 6 12 12 C 1.50703 * 109.46968 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00075 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99895 * 180.02562 * 12 11 10 15 15 N 1.31520 * 120.00153 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99937 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.46981 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47127 * 120.00050 * 16 14 12 19 19 H 1.48506 * 109.46991 * 239.99982 * 16 14 12 20 20 C 1.46575 * 117.25502 * 31.66427 * 5 4 3 21 21 C 1.50171 * 109.75615 * 271.20915 * 20 5 4 22 22 C 1.38556 * 118.61259 * 226.03624 * 21 20 5 23 23 C 1.38710 * 118.86331 * 184.33128 * 22 21 20 24 24 C 1.38096 * 118.59081 * 359.82259 * 23 22 21 25 25 N 1.31336 * 120.97389 * 358.91594 * 24 23 22 26 26 C 1.33878 * 122.75239 * 0.53970 * 25 24 23 27 27 H 1.09002 * 109.47381 * 285.50980 * 1 2 3 28 28 H 1.09000 * 109.47647 * 45.51864 * 1 2 3 29 29 H 1.09004 * 109.47141 * 165.51391 * 1 2 3 30 30 H 1.09000 * 109.52756 * 158.41662 * 3 2 1 31 31 H 1.09002 * 109.52557 * 278.54275 * 3 2 1 32 32 H 1.08997 * 109.80774 * 180.02562 * 4 3 2 33 33 H 1.08998 * 109.80514 * 300.87997 * 4 3 2 34 34 H 1.09000 * 109.46950 * 303.61126 * 9 6 5 35 35 H 1.08999 * 109.47513 * 63.60759 * 9 6 5 36 36 H 1.08995 * 109.47471 * 300.00242 * 10 9 6 37 37 H 1.09002 * 109.46924 * 60.00353 * 10 9 6 38 38 H 1.09000 * 109.47156 * 300.00000 * 11 10 9 39 39 H 1.08994 * 109.47207 * 59.99780 * 11 10 9 40 40 H 0.96999 * 119.99657 * 180.02562 * 15 14 12 41 41 H 1.08999 * 109.41854 * 31.29944 * 20 5 4 42 42 H 1.09003 * 109.42240 * 151.17769 * 20 5 4 43 43 H 1.07997 * 120.57206 * 4.61141 * 22 21 20 44 44 H 1.07997 * 120.70407 * 179.80009 * 23 22 21 45 45 H 1.07995 * 119.51598 * 178.89518 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9936 1.3669 0.0000 4 6 1.1108 2.2481 0.9072 5 7 1.1635 1.6940 2.2483 6 16 -0.1285 1.8048 3.2782 7 8 -1.2389 2.0409 2.4235 8 8 -0.0494 0.6259 4.0677 9 6 0.2211 3.2711 4.2871 10 6 -0.8683 3.4310 5.3494 11 6 -0.5730 4.6675 6.2008 12 6 -1.6457 4.8245 7.2475 13 1 -2.4572 4.1138 7.3000 14 6 -1.5918 5.8762 8.1375 15 7 -0.6038 6.7420 8.0734 16 14 -2.9219 6.0713 9.4346 17 1 -3.9135 4.9747 9.2955 18 1 -2.3079 6.0158 10.7856 19 1 -3.6020 7.3789 9.2533 20 6 2.4072 1.0323 2.6528 21 6 2.3545 -0.4208 2.2775 22 6 2.7497 -1.3626 3.2137 23 6 2.7898 -2.6988 2.8435 24 6 2.4297 -3.0384 1.5543 25 7 2.0361 -2.1228 0.6990 26 6 1.9690 -0.8223 1.0099 27 1 -0.3634 0.2748 0.9902 28 1 -0.3634 0.7200 -0.7332 29 1 -0.3634 -0.9950 -0.2571 30 1 3.0160 1.3648 0.3779 31 1 1.9817 1.7617 -1.0159 32 1 1.4922 3.2692 0.9144 33 1 0.0834 2.2398 0.5433 34 1 1.1893 3.1546 4.7742 35 1 0.2394 4.1550 3.6496 36 1 -1.8364 3.5475 4.8624 37 1 -0.8864 2.5471 5.9871 38 1 0.3951 4.5505 6.6879 39 1 -0.5544 5.5515 5.5635 40 1 -0.5658 7.4816 8.6998 41 1 3.2501 1.5063 2.1498 42 1 2.5316 1.1229 3.7319 43 1 3.0176 -1.0622 4.2158 44 1 3.0965 -3.4574 3.5483 45 1 2.4726 -4.0722 1.2447 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867899875.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:14 Heat of formation + Delta-G solvation = -38.213337 kcal Electronic energy + Delta-G solvation = -28265.965365 eV Core-core repulsion = 24410.151395 eV Total energy + Delta-G solvation = -3855.813969 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.92201 -39.18949 -38.31291 -37.11973 -36.51390 -36.45195 -34.20035 -33.51262 -32.32727 -29.72955 -29.53966 -27.67878 -27.00997 -25.65120 -24.06844 -23.12437 -22.34868 -21.89043 -20.02450 -18.95619 -18.63302 -18.14745 -17.75654 -17.62648 -17.09327 -16.71309 -16.59344 -16.45382 -15.84868 -15.61072 -15.52560 -15.05633 -14.54186 -14.42298 -14.18130 -14.00981 -13.92970 -13.83200 -13.56859 -13.47471 -13.23292 -13.11210 -13.02594 -12.92404 -12.79733 -12.64531 -12.61475 -12.53521 -12.25469 -12.14851 -11.80909 -11.40830 -11.15677 -10.92193 -10.64787 -10.60223 -10.11430 -10.07180 -9.08363 -8.25207 -6.36173 -0.89790 0.09122 0.34909 1.38108 1.39178 1.52102 1.57829 2.37935 2.43833 2.70210 2.82487 3.03465 3.08526 3.46407 3.61978 3.71831 3.75981 3.82251 3.96556 4.03330 4.13344 4.21081 4.28676 4.33220 4.38251 4.45267 4.47621 4.56612 4.59775 4.64944 4.70114 4.83506 4.89034 4.92984 4.97629 5.02675 5.15918 5.30196 5.42197 5.44623 5.57262 5.59161 5.76559 5.84076 6.13684 6.16931 6.79272 7.17795 7.33409 8.86384 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021513 B = 0.002771 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.224267 B =10101.503601 C =10600.422566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.504 5.504 3 C 0.057 3.943 4 C 0.067 3.933 5 N -0.995 5.995 6 S 2.613 3.387 7 O -0.982 6.982 8 O -0.980 6.980 9 C -0.605 4.605 10 C -0.106 4.106 11 C 0.033 3.967 12 C -0.553 4.553 13 H 0.058 0.942 14 C 0.004 3.996 15 N -0.928 5.928 16 Si 0.962 3.038 17 H -0.265 1.265 18 H -0.276 1.276 19 H -0.276 1.276 20 C 0.159 3.841 21 C -0.188 4.188 22 C -0.059 4.059 23 C -0.185 4.185 24 C 0.107 3.893 25 N -0.523 5.523 26 C 0.302 3.698 27 H 0.014 0.986 28 H 0.101 0.899 29 H 0.061 0.939 30 H 0.096 0.904 31 H 0.125 0.875 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.005 0.995 39 H 0.004 0.996 40 H 0.265 0.735 41 H 0.130 0.870 42 H 0.103 0.897 43 H 0.156 0.844 44 H 0.166 0.834 45 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.392 -13.956 -16.159 24.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.223 5.223 3 C -0.071 4.071 4 C -0.059 4.059 5 N -0.833 5.833 6 S 2.711 3.289 7 O -0.972 6.972 8 O -0.970 6.970 9 C -0.736 4.736 10 C -0.145 4.145 11 C -0.006 4.006 12 C -0.591 4.591 13 H 0.077 0.923 14 C -0.194 4.194 15 N -0.568 5.568 16 Si 0.786 3.214 17 H -0.189 1.189 18 H -0.201 1.201 19 H -0.202 1.202 20 C 0.034 3.966 21 C -0.195 4.195 22 C -0.086 4.086 23 C -0.205 4.205 24 C -0.054 4.054 25 N -0.234 5.234 26 C 0.075 3.925 27 H 0.032 0.968 28 H 0.120 0.880 29 H 0.080 0.920 30 H 0.114 0.886 31 H 0.143 0.857 32 H 0.126 0.874 33 H 0.108 0.892 34 H 0.166 0.834 35 H 0.165 0.835 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.024 0.976 39 H 0.022 0.978 40 H 0.074 0.926 41 H 0.147 0.853 42 H 0.121 0.879 43 H 0.174 0.826 44 H 0.184 0.816 45 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 10.591 -14.803 -17.379 25.166 hybrid contribution -0.309 1.307 2.493 2.832 sum 10.282 -13.496 -14.887 22.572 Atomic orbital electron populations 1.22367 0.84434 1.03175 1.00539 1.57619 1.08288 1.12954 1.43471 1.22952 0.98702 0.83654 1.01835 1.22509 1.03299 0.99511 0.80611 1.57417 1.30016 1.70483 1.25353 1.04845 0.73357 0.76441 0.74250 1.93514 1.51114 1.87286 1.65305 1.93540 1.86171 1.45261 1.72057 1.30515 1.09609 1.20877 1.12605 1.21313 0.96067 1.01145 0.96024 1.18951 0.95940 0.92064 0.93608 1.21754 1.10243 1.11147 1.15968 0.92344 1.25913 0.98225 0.95364 0.99921 1.70068 1.33004 1.15300 1.38457 0.85449 0.79033 0.78329 0.78587 1.18888 1.20109 1.20167 1.20337 0.87139 0.86941 1.02187 1.21273 1.05834 0.98949 0.93479 1.21802 0.94190 0.92999 0.99563 1.22493 1.02099 0.97273 0.98633 1.23017 0.93051 0.99288 0.90006 1.67447 1.16161 1.02033 1.37756 1.19808 0.95428 0.89949 0.87357 0.96779 0.88042 0.92045 0.88614 0.85745 0.87403 0.89240 0.83383 0.83545 0.91942 0.91674 0.97634 0.97770 0.92565 0.85282 0.87913 0.82647 0.81638 0.80335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.96 8.16 127.69 1.04 2.00 16 2 N -0.50 -10.92 4.69 -724.37 -3.40 -14.31 16 3 C 0.06 0.79 5.81 86.81 0.50 1.30 16 4 C 0.07 1.03 5.59 87.04 0.49 1.52 16 5 N -1.00 -20.01 2.20 -521.32 -1.15 -21.15 16 6 S 2.61 74.60 4.87 -56.49 -0.27 74.33 16 7 O -0.98 -32.96 15.63 -127.65 -2.00 -34.96 16 8 O -0.98 -33.65 17.29 -127.65 -2.21 -35.86 16 9 C -0.61 -17.45 6.18 71.98 0.44 -17.01 16 10 C -0.11 -4.26 5.16 30.60 0.16 -4.10 16 11 C 0.03 1.65 4.97 29.85 0.15 1.80 16 12 C -0.55 -31.19 9.11 25.60 0.23 -30.96 16 13 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 14 C 0.00 0.24 5.46 84.65 0.46 0.70 16 15 N -0.93 -54.87 13.29 21.45 0.28 -54.59 16 16 Si 0.96 43.74 29.54 68.60 2.03 45.77 16 17 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 18 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 19 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 20 C 0.16 2.66 4.96 85.45 0.42 3.09 16 21 C -0.19 -4.04 5.42 -19.90 -0.11 -4.15 16 22 C -0.06 -1.12 9.70 22.46 0.22 -0.91 16 23 C -0.18 -3.14 10.14 22.35 0.23 -2.91 16 24 C 0.11 2.09 11.17 84.73 0.95 3.04 16 25 N -0.52 -13.36 10.28 -192.77 -1.98 -15.34 16 26 C 0.30 7.35 5.65 132.28 0.75 8.10 16 27 H 0.01 0.38 5.05 -2.39 -0.01 0.37 16 28 H 0.10 1.85 7.49 -2.39 -0.02 1.83 16 29 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 30 H 0.10 1.10 5.96 -2.39 -0.01 1.09 16 31 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.09 1.65 5.15 -2.39 -0.01 1.63 16 34 H 0.15 3.60 8.14 -2.39 -0.02 3.58 16 35 H 0.15 3.68 8.14 -2.39 -0.02 3.66 16 36 H 0.06 2.48 8.14 -2.39 -0.02 2.47 16 37 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 38 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 39 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 40 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 41 H 0.13 1.31 6.51 -2.39 -0.02 1.29 16 42 H 0.10 1.50 7.70 -2.39 -0.02 1.49 16 43 H 0.16 2.31 7.93 -2.91 -0.02 2.28 16 44 H 0.17 1.71 8.06 -2.91 -0.02 1.69 16 45 H 0.18 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -79.25 367.82 -1.76 -81.01 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 0.99 Total: 13.59 kcal Atomic # 6 Polarization: -44.42 SS G_CDS: 5.93 Total: -38.49 kcal Atomic # 7 Polarization: -99.15 SS G_CDS: -6.24 Total: -105.39 kcal Atomic # 8 Polarization: -66.61 SS G_CDS: -4.20 Total: -70.82 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: 74.60 SS G_CDS: -0.27 Total: 74.33 kcal Total: -79.25 -1.76 -81.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867899875.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.800 kcal (2) G-P(sol) polarization free energy of solvation -79.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds