Wall clock time and date at job start Sat Apr 11 2020 05:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 113.99630 * 2 1 4 4 C 1.53002 * 109.47030 * 180.02562 * 3 2 1 5 5 N 1.46492 * 109.47472 * 64.99484 * 4 3 2 6 6 C 1.46500 * 120.00289 * 270.00565 * 5 4 3 7 7 C 1.50696 * 109.46835 * 265.08127 * 6 5 4 8 8 H 1.08000 * 120.00061 * 5.01525 * 7 6 5 9 9 C 1.37880 * 119.99921 * 185.00864 * 7 6 5 10 10 N 1.31511 * 120.00089 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00201 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47212 * 90.00043 * 11 9 7 13 13 H 1.48495 * 109.47423 * 210.00395 * 11 9 7 14 14 H 1.48502 * 109.47356 * 330.00735 * 11 9 7 15 15 C 1.34779 * 119.99714 * 90.00065 * 5 4 3 16 16 O 1.21626 * 120.00216 * 4.84904 * 15 5 4 17 17 C 1.47163 * 119.99873 * 185.12320 * 15 5 4 18 18 C 1.38045 * 127.04381 * 259.50209 * 17 15 5 19 19 C 1.39109 * 106.13097 * 179.71750 * 18 17 15 20 20 N 1.31380 * 107.30114 * 0.55968 * 19 18 17 21 21 N 1.28395 * 111.06769 * 359.63768 * 20 19 18 22 22 C 1.46495 * 125.21246 * 180.02562 * 21 20 19 23 23 C 1.50563 * 127.61158 * 180.44364 * 19 18 17 24 24 C 1.52796 * 110.84057 * 340.55271 * 23 19 18 25 25 S 1.81798 * 109.09834 * 52.75015 * 24 23 19 26 26 C 1.50698 * 126.62521 * 0.28846 * 18 17 15 27 27 H 1.08997 * 109.47087 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47307 * 300.00417 * 1 2 3 29 29 H 1.09003 * 109.47282 * 60.00247 * 1 2 3 30 30 H 1.08995 * 109.47666 * 59.99845 * 3 2 1 31 31 H 1.09003 * 109.47079 * 299.99636 * 3 2 1 32 32 H 1.09002 * 109.46820 * 304.99346 * 4 3 2 33 33 H 1.09004 * 109.47072 * 185.00126 * 4 3 2 34 34 H 1.08997 * 109.47098 * 25.08239 * 6 5 4 35 35 H 1.09000 * 109.46905 * 145.08285 * 6 5 4 36 36 H 0.97000 * 120.00213 * 179.97438 * 10 9 7 37 37 H 1.08996 * 109.47374 * 274.94744 * 22 21 20 38 38 H 1.09006 * 109.46836 * 34.94277 * 22 21 20 39 39 H 1.08996 * 109.47755 * 154.93829 * 22 21 20 40 40 H 1.09003 * 109.20421 * 100.89836 * 23 19 18 41 41 H 1.08994 * 109.20243 * 220.20061 * 23 19 18 42 42 H 1.08998 * 109.53529 * 172.63778 * 24 23 19 43 43 H 1.09005 * 109.53664 * 292.78708 * 24 23 19 44 44 H 1.08994 * 109.86814 * 42.68134 * 26 18 17 45 45 H 1.08999 * 109.52340 * 282.11029 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2526 6 6 4.1052 -0.8920 -1.3426 7 6 5.5320 -1.2877 -1.0621 8 1 6.2503 -0.5399 -0.7600 9 6 5.9204 -2.6043 -1.1911 10 7 5.0459 -3.5148 -1.5594 11 14 7.6889 -3.0949 -0.8428 12 1 7.8299 -3.4530 0.5915 13 1 8.0530 -4.2639 -1.6830 14 1 8.5897 -1.9577 -1.1597 15 6 4.2615 1.3338 -2.3217 16 8 4.2394 2.5457 -2.2222 17 6 4.5944 0.7073 -3.6111 18 6 5.8535 0.5270 -4.1475 19 6 5.6653 -0.1103 -5.3696 20 7 4.3716 -0.2740 -5.5297 21 7 3.7199 0.1901 -4.5255 22 6 2.2622 0.1684 -4.3815 23 6 6.7207 -0.5435 -6.3522 24 6 8.0311 0.2028 -6.1067 25 16 8.4997 0.0231 -4.3593 26 6 7.1637 0.9300 -3.5214 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.6885 1.8464 0.8899 31 1 1.6885 1.8463 -0.8900 32 1 3.8514 0.5684 0.8410 33 1 3.9784 2.1766 0.0889 34 1 3.4475 -1.3612 -0.6109 35 1 3.8273 -1.2203 -2.3442 36 1 5.3192 -4.4411 -1.6505 37 1 1.8344 1.0355 -4.8846 38 1 1.8664 -0.7433 -4.8293 39 1 2.0010 0.1965 -3.3237 40 1 6.8925 -1.6146 -6.2447 41 1 6.3744 -0.3365 -7.3647 42 1 8.8136 -0.2170 -6.7388 43 1 7.8991 1.2587 -6.3431 44 1 7.1593 0.6807 -2.4603 45 1 7.3126 2.0025 -3.6464 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878947973.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:25 Heat of formation + Delta-G solvation = 2.487595 kcal Electronic energy + Delta-G solvation = -29326.353373 eV Core-core repulsion = 25472.304329 eV Total energy + Delta-G solvation = -3854.049044 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.13686 -39.12005 -37.51076 -35.11978 -34.99098 -32.64175 -32.05795 -31.44959 -29.93658 -27.89459 -27.04783 -26.15768 -25.91353 -23.55278 -23.03476 -22.89570 -21.07363 -19.77200 -18.44964 -17.08977 -16.55842 -16.35999 -16.16393 -15.90231 -15.82092 -15.20277 -14.99256 -14.80108 -14.47547 -14.20695 -13.98333 -13.62297 -13.39064 -13.34167 -12.88652 -12.60584 -12.47612 -12.42373 -12.25976 -12.07354 -11.91455 -11.69101 -11.52299 -11.47419 -11.13340 -10.94189 -10.88692 -10.57700 -10.17314 -10.03206 -9.76305 -9.65934 -9.58890 -9.42277 -8.49053 -8.38121 -8.14774 -7.88930 -7.30177 -6.08628 -4.14929 2.05292 2.19308 2.61990 2.78634 3.07347 3.23394 3.33305 3.41295 3.47730 3.76742 3.99674 4.44594 4.65799 4.96248 5.07177 5.11942 5.23369 5.27061 5.28464 5.34470 5.35695 5.43980 5.46888 5.49601 5.53734 5.57606 5.63224 5.72540 5.75185 5.77971 5.88672 5.96486 6.14565 6.19589 6.23729 6.37229 6.65403 6.94111 7.17401 7.25023 7.32298 7.48425 7.83055 8.10197 8.12436 8.51471 8.63748 8.89730 9.52446 10.98841 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010058 B = 0.005860 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2783.185999 B = 4776.616735 C = 6117.630581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.376 6.376 3 C 0.047 3.953 4 C 0.118 3.882 5 N -0.574 5.574 6 C 0.243 3.757 7 C -0.534 4.534 8 H 0.058 0.942 9 C 0.075 3.925 10 N -0.888 5.888 11 Si 0.888 3.112 12 H -0.283 1.283 13 H -0.284 1.284 14 H -0.266 1.266 15 C 0.589 3.411 16 O -0.559 6.559 17 C 0.024 3.976 18 C -0.149 4.149 19 C 0.036 3.964 20 N -0.287 5.287 21 N -0.270 5.270 22 C 0.094 3.906 23 C -0.028 4.028 24 C -0.081 4.081 25 S -0.248 6.248 26 C 0.003 3.997 27 H 0.084 0.916 28 H 0.036 0.964 29 H 0.035 0.965 30 H 0.055 0.945 31 H 0.046 0.954 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.048 0.952 35 H 0.034 0.966 36 H 0.263 0.737 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.109 0.891 43 H 0.083 0.917 44 H 0.119 0.881 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.632 7.665 -4.168 9.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.294 6.294 3 C -0.031 4.031 4 C -0.006 4.006 5 N -0.303 5.303 6 C 0.124 3.876 7 C -0.572 4.572 8 H 0.076 0.924 9 C -0.129 4.129 10 N -0.526 5.526 11 Si 0.716 3.284 12 H -0.209 1.209 13 H -0.210 1.210 14 H -0.190 1.190 15 C 0.373 3.627 16 O -0.439 6.439 17 C -0.106 4.106 18 C -0.161 4.161 19 C -0.122 4.122 20 N -0.119 5.119 21 N -0.057 5.057 22 C -0.047 4.047 23 C -0.068 4.068 24 C -0.229 4.229 25 S -0.020 6.020 26 C -0.146 4.146 27 H 0.103 0.897 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.066 0.934 35 H 0.052 0.948 36 H 0.073 0.927 37 H 0.097 0.903 38 H 0.115 0.885 39 H 0.110 0.890 40 H 0.108 0.892 41 H 0.101 0.899 42 H 0.127 0.873 43 H 0.102 0.898 44 H 0.137 0.863 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.632 6.942 -4.397 9.433 hybrid contribution 0.075 0.502 0.369 0.627 sum -4.557 7.444 -4.028 9.613 Atomic orbital electron populations 1.22701 0.81981 1.02537 0.99272 1.88071 1.18802 1.27307 1.95225 1.23028 0.95022 0.85037 0.99972 1.21458 0.91218 1.00059 0.87853 1.48284 1.61929 1.10467 1.09624 1.19519 0.97682 0.71744 0.98682 1.21313 0.94773 0.93566 1.47595 0.92422 1.24804 0.97417 0.96240 0.94416 1.69913 1.34215 1.01977 1.46528 0.86616 0.85167 0.78860 0.77806 1.20922 1.21000 1.18985 1.17054 0.77066 0.85688 0.82857 1.90735 1.54261 1.13637 1.85223 1.20930 0.90148 1.05526 0.93990 1.19644 0.92797 1.07395 0.96224 1.21398 0.91298 1.03314 0.96232 1.73045 1.06221 1.19921 1.12668 1.45204 1.07030 1.41144 1.12363 1.22061 0.74042 1.04284 1.04290 1.19799 0.89773 1.00883 0.96394 1.23281 1.00029 1.03680 0.95953 1.86924 1.35988 1.75332 1.03778 1.21636 0.90094 1.00218 1.02652 0.89749 0.94539 0.94657 0.92725 0.93549 0.88930 0.88960 0.93413 0.94846 0.92712 0.90318 0.88533 0.89028 0.89240 0.89873 0.87270 0.89804 0.86293 0.89454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.49 16 2 O -0.38 -6.04 9.62 -35.23 -0.34 -6.38 16 3 C 0.05 0.69 6.28 37.16 0.23 0.92 16 4 C 0.12 2.01 5.83 -4.04 -0.02 1.99 16 5 N -0.57 -11.76 2.43 -176.43 -0.43 -12.18 16 6 C 0.24 5.81 4.75 -5.20 -0.02 5.78 16 7 C -0.53 -14.01 9.35 -34.44 -0.32 -14.33 16 8 H 0.06 1.53 7.37 -52.49 -0.39 1.14 16 9 C 0.07 2.04 5.46 -17.82 -0.10 1.94 16 10 N -0.89 -25.28 13.29 55.43 0.74 -24.55 16 11 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 15 C 0.59 12.35 6.64 -12.64 -0.08 12.26 16 16 O -0.56 -12.27 16.66 5.25 0.09 -12.18 16 17 C 0.02 0.51 4.96 -82.15 -0.41 0.10 16 18 C -0.15 -3.06 5.97 -104.37 -0.62 -3.68 16 19 C 0.04 0.69 6.90 -82.53 -0.57 0.12 16 20 N -0.29 -5.65 11.91 33.57 0.40 -5.25 16 21 N -0.27 -5.21 3.51 -63.96 -0.22 -5.44 16 22 C 0.09 1.39 11.22 59.84 0.67 2.06 16 23 C -0.03 -0.43 6.07 -28.05 -0.17 -0.60 16 24 C -0.08 -1.09 6.43 37.05 0.24 -0.86 16 25 S -0.25 -4.39 22.27 -107.50 -2.39 -6.79 16 26 C 0.00 0.05 6.60 36.00 0.24 0.29 16 27 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.09 1.59 8.07 -51.93 -0.42 1.17 16 33 H 0.09 1.50 7.36 -51.93 -0.38 1.11 16 34 H 0.05 1.22 7.22 -51.93 -0.37 0.84 16 35 H 0.03 0.87 6.79 -51.93 -0.35 0.52 16 36 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 37 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.09 1.39 7.67 -51.93 -0.40 0.99 16 40 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 41 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.12 2.53 7.70 -51.93 -0.40 2.13 16 45 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 LS Contribution 386.18 15.07 5.82 5.82 Total: -1.00 -32.59 386.18 -8.11 -40.70 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -6.92 Total: 2.17 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: 0.17 Total: 7.50 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: 0.48 Total: -47.42 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.25 Total: -18.56 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -4.39 SS G_CDS: -2.39 Total: -6.79 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.59 -8.11 -40.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878947973.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.190 kcal (2) G-P(sol) polarization free energy of solvation -32.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds