Wall clock time and date at job start Sat Apr 11 2020 05:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 113.99630 * 2 1 4 4 C 1.53002 * 109.47030 * 180.02562 * 3 2 1 5 5 N 1.46492 * 109.47472 * 64.99484 * 4 3 2 6 6 C 1.46500 * 120.00289 * 270.00565 * 5 4 3 7 7 C 1.50696 * 109.46835 * 265.08127 * 6 5 4 8 8 H 1.08000 * 120.00061 * 5.01525 * 7 6 5 9 9 C 1.37880 * 119.99921 * 185.00864 * 7 6 5 10 10 N 1.31511 * 120.00089 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00201 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47212 * 90.00043 * 11 9 7 13 13 H 1.48495 * 109.47423 * 210.00395 * 11 9 7 14 14 H 1.48502 * 109.47356 * 330.00735 * 11 9 7 15 15 C 1.34779 * 119.99714 * 90.00065 * 5 4 3 16 16 O 1.21626 * 120.00216 * 4.84904 * 15 5 4 17 17 C 1.47163 * 119.99873 * 185.12320 * 15 5 4 18 18 C 1.38045 * 127.04381 * 259.50209 * 17 15 5 19 19 C 1.39109 * 106.13097 * 179.71750 * 18 17 15 20 20 N 1.31380 * 107.30114 * 0.55968 * 19 18 17 21 21 N 1.28395 * 111.06769 * 359.63768 * 20 19 18 22 22 C 1.46495 * 125.21246 * 180.02562 * 21 20 19 23 23 C 1.50563 * 127.61158 * 180.44364 * 19 18 17 24 24 C 1.52796 * 110.84057 * 340.55271 * 23 19 18 25 25 S 1.81798 * 109.09834 * 52.75015 * 24 23 19 26 26 C 1.50698 * 126.62521 * 0.28846 * 18 17 15 27 27 H 1.08997 * 109.47087 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47307 * 300.00417 * 1 2 3 29 29 H 1.09003 * 109.47282 * 60.00247 * 1 2 3 30 30 H 1.08995 * 109.47666 * 59.99845 * 3 2 1 31 31 H 1.09003 * 109.47079 * 299.99636 * 3 2 1 32 32 H 1.09002 * 109.46820 * 304.99346 * 4 3 2 33 33 H 1.09004 * 109.47072 * 185.00126 * 4 3 2 34 34 H 1.08997 * 109.47098 * 25.08239 * 6 5 4 35 35 H 1.09000 * 109.46905 * 145.08285 * 6 5 4 36 36 H 0.97000 * 120.00213 * 179.97438 * 10 9 7 37 37 H 1.08996 * 109.47374 * 274.94744 * 22 21 20 38 38 H 1.09006 * 109.46836 * 34.94277 * 22 21 20 39 39 H 1.08996 * 109.47755 * 154.93829 * 22 21 20 40 40 H 1.09003 * 109.20421 * 100.89836 * 23 19 18 41 41 H 1.08994 * 109.20243 * 220.20061 * 23 19 18 42 42 H 1.08998 * 109.53529 * 172.63778 * 24 23 19 43 43 H 1.09005 * 109.53664 * 292.78708 * 24 23 19 44 44 H 1.08994 * 109.86814 * 42.68134 * 26 18 17 45 45 H 1.08999 * 109.52340 * 282.11029 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2526 6 6 4.1052 -0.8920 -1.3426 7 6 5.5320 -1.2877 -1.0621 8 1 6.2503 -0.5399 -0.7600 9 6 5.9204 -2.6043 -1.1911 10 7 5.0459 -3.5148 -1.5594 11 14 7.6889 -3.0949 -0.8428 12 1 7.8299 -3.4530 0.5915 13 1 8.0530 -4.2639 -1.6830 14 1 8.5897 -1.9577 -1.1597 15 6 4.2615 1.3338 -2.3217 16 8 4.2394 2.5457 -2.2222 17 6 4.5944 0.7073 -3.6111 18 6 5.8535 0.5270 -4.1475 19 6 5.6653 -0.1103 -5.3696 20 7 4.3716 -0.2740 -5.5297 21 7 3.7199 0.1901 -4.5255 22 6 2.2622 0.1684 -4.3815 23 6 6.7207 -0.5435 -6.3522 24 6 8.0311 0.2028 -6.1067 25 16 8.4997 0.0231 -4.3593 26 6 7.1637 0.9300 -3.5214 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.6885 1.8464 0.8899 31 1 1.6885 1.8463 -0.8900 32 1 3.8514 0.5684 0.8410 33 1 3.9784 2.1766 0.0889 34 1 3.4475 -1.3612 -0.6109 35 1 3.8273 -1.2203 -2.3442 36 1 5.3192 -4.4411 -1.6505 37 1 1.8344 1.0355 -4.8846 38 1 1.8664 -0.7433 -4.8293 39 1 2.0010 0.1965 -3.3237 40 1 6.8925 -1.6146 -6.2447 41 1 6.3744 -0.3365 -7.3647 42 1 8.8136 -0.2170 -6.7388 43 1 7.8991 1.2587 -6.3431 44 1 7.1593 0.6807 -2.4603 45 1 7.3126 2.0025 -3.6464 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878947973.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:24 Heat of formation + Delta-G solvation = -17.637722 kcal Electronic energy + Delta-G solvation = -29327.226072 eV Core-core repulsion = 25472.304329 eV Total energy + Delta-G solvation = -3854.921744 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.60903 -40.71554 -38.73235 -36.76437 -36.36693 -34.61668 -33.48988 -32.76739 -31.36802 -29.47762 -28.73496 -27.39406 -27.10261 -25.21058 -24.59219 -24.27046 -22.54697 -21.20265 -19.98931 -18.77561 -18.39331 -17.90013 -17.47708 -17.19232 -17.11633 -16.66025 -16.55310 -16.17705 -16.05603 -15.52013 -15.46512 -15.02144 -14.78228 -14.72297 -14.41733 -14.17613 -13.82365 -13.71572 -13.65229 -13.57471 -13.44190 -13.12651 -12.85152 -12.79543 -12.73664 -12.61125 -12.45281 -12.17353 -11.95576 -11.73489 -11.52892 -11.24353 -10.94137 -10.62750 -10.55110 -9.89508 -9.63326 -9.60983 -8.68905 -8.19327 -6.30433 0.59207 0.79314 1.11342 1.36767 1.42529 1.46033 1.51429 1.62290 1.74470 2.21682 2.42723 2.90538 3.14925 3.30963 3.45367 3.85448 3.92489 4.00373 4.08699 4.14972 4.17556 4.24161 4.28550 4.33669 4.37289 4.41441 4.50080 4.52363 4.53949 4.58706 4.73817 4.82809 4.84823 4.86011 4.90383 4.93454 4.99850 5.22674 5.49237 5.59676 5.75771 5.79909 6.06371 6.23314 6.37147 6.77328 7.00740 7.04745 7.40144 8.87195 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010058 B = 0.005860 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2783.185999 B = 4776.616735 C = 6117.630581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.410 6.410 3 C 0.055 3.945 4 C 0.109 3.891 5 N -0.573 5.573 6 C 0.269 3.731 7 C -0.533 4.533 8 H 0.050 0.950 9 C 0.034 3.966 10 N -0.917 5.917 11 Si 0.937 3.063 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.267 1.267 15 C 0.593 3.407 16 O -0.572 6.572 17 C -0.003 4.003 18 C -0.168 4.168 19 C 0.025 3.975 20 N -0.295 5.295 21 N -0.272 5.272 22 C 0.086 3.914 23 C -0.028 4.028 24 C -0.062 4.062 25 S -0.285 6.285 26 C 0.009 3.991 27 H 0.087 0.913 28 H 0.057 0.943 29 H 0.046 0.954 30 H 0.088 0.912 31 H 0.045 0.955 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.031 0.969 35 H 0.013 0.987 36 H 0.264 0.736 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.114 0.886 42 H 0.145 0.855 43 H 0.100 0.900 44 H 0.088 0.912 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.676 8.302 -5.137 10.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.330 6.330 3 C -0.022 4.022 4 C -0.013 4.013 5 N -0.302 5.302 6 C 0.149 3.851 7 C -0.572 4.572 8 H 0.068 0.932 9 C -0.166 4.166 10 N -0.556 5.556 11 Si 0.762 3.238 12 H -0.200 1.200 13 H -0.210 1.210 14 H -0.191 1.191 15 C 0.378 3.622 16 O -0.452 6.452 17 C -0.134 4.134 18 C -0.180 4.180 19 C -0.133 4.133 20 N -0.127 5.127 21 N -0.060 5.060 22 C -0.053 4.053 23 C -0.069 4.069 24 C -0.210 4.210 25 S -0.058 6.058 26 C -0.140 4.140 27 H 0.106 0.894 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.106 0.894 31 H 0.063 0.937 32 H 0.106 0.894 33 H 0.119 0.881 34 H 0.049 0.951 35 H 0.031 0.969 36 H 0.073 0.927 37 H 0.126 0.874 38 H 0.129 0.871 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.132 0.868 42 H 0.163 0.837 43 H 0.119 0.881 44 H 0.107 0.893 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.697 7.594 -5.346 10.407 hybrid contribution 0.019 0.323 0.654 0.729 sum -4.678 7.917 -4.692 10.324 Atomic orbital electron populations 1.22886 0.79808 1.03345 1.00856 1.88016 1.21287 1.28150 1.95527 1.22937 0.92864 0.84937 1.01454 1.21714 0.93506 0.99976 0.86110 1.48184 1.61996 1.09152 1.10849 1.18954 0.95908 0.73592 0.96666 1.21504 0.95675 0.93364 1.46620 0.93187 1.25403 1.00306 0.96409 0.94501 1.69999 1.35621 1.02175 1.47839 0.85852 0.81622 0.78288 0.77989 1.19980 1.21008 1.19105 1.17058 0.76614 0.85483 0.83018 1.90709 1.55036 1.13977 1.85508 1.21090 0.91096 1.06718 0.94463 1.19984 0.93081 1.07911 0.97040 1.22065 0.91976 1.02677 0.96585 1.73028 1.06654 1.20110 1.12922 1.45584 1.08225 1.40372 1.11798 1.22354 0.72170 1.06405 1.04403 1.19963 0.89370 1.00592 0.96936 1.23422 1.00158 1.04910 0.92518 1.86969 1.35535 1.75483 1.07809 1.21486 0.90411 1.01071 1.01060 0.89443 0.92424 0.93510 0.89395 0.93679 0.89422 0.88098 0.95110 0.96938 0.92739 0.87384 0.87144 0.89795 0.89777 0.86751 0.83740 0.88148 0.89315 0.88262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 11.01 113.37 1.25 1.84 16 2 O -0.41 -12.96 9.62 -148.98 -1.43 -14.39 16 3 C 0.06 1.56 6.28 71.98 0.45 2.01 16 4 C 0.11 3.73 5.83 86.38 0.50 4.23 16 5 N -0.57 -23.86 2.43 -830.36 -2.02 -25.88 16 6 C 0.27 13.21 4.75 85.63 0.41 13.62 16 7 C -0.53 -28.55 9.35 25.60 0.24 -28.31 16 8 H 0.05 2.72 7.37 -2.91 -0.02 2.69 16 9 C 0.03 1.90 5.46 84.66 0.46 2.36 16 10 N -0.92 -52.93 13.29 21.45 0.28 -52.64 16 11 Si 0.94 44.68 29.54 68.60 2.03 46.71 16 12 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 13 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 14 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 15 C 0.59 25.17 6.64 86.59 0.57 25.74 16 16 O -0.57 -25.14 16.66 -4.11 -0.07 -25.21 16 17 C 0.00 -0.12 4.96 40.68 0.20 0.08 16 18 C -0.17 -6.93 5.97 -19.70 -0.12 -7.05 16 19 C 0.02 0.93 6.90 42.79 0.30 1.23 16 20 N -0.30 -11.40 11.91 -47.70 -0.57 -11.97 16 21 N -0.27 -10.44 3.51 -356.26 -1.25 -11.69 16 22 C 0.09 2.49 11.22 127.77 1.43 3.92 16 23 C -0.03 -0.79 6.07 29.74 0.18 -0.61 16 24 C -0.06 -1.50 6.43 71.91 0.46 -1.04 16 25 S -0.29 -9.88 22.27 -56.49 -1.26 -11.13 16 26 C 0.01 0.34 6.60 71.24 0.47 0.81 16 27 H 0.09 1.83 8.14 -2.39 -0.02 1.82 16 28 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 29 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.09 3.04 8.07 -2.39 -0.02 3.02 16 33 H 0.10 3.24 7.36 -2.39 -0.02 3.22 16 34 H 0.03 1.62 7.22 -2.39 -0.02 1.60 16 35 H 0.01 0.67 6.79 -2.39 -0.02 0.66 16 36 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 37 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.11 2.84 8.14 -2.38 -0.02 2.82 16 39 H 0.08 2.55 7.67 -2.39 -0.02 2.53 16 40 H 0.08 2.46 8.14 -2.39 -0.02 2.45 16 41 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 42 H 0.14 2.54 8.14 -2.39 -0.02 2.52 16 43 H 0.10 2.17 8.14 -2.38 -0.02 2.15 16 44 H 0.09 3.93 7.70 -2.39 -0.02 3.91 16 45 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 Total: -1.00 -70.97 386.18 3.51 -67.46 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: 0.99 Total: 19.92 kcal Atomic # 6 Polarization: 12.02 SS G_CDS: 6.81 Total: 18.83 kcal Atomic # 7 Polarization: -98.62 SS G_CDS: -3.55 Total: -102.18 kcal Atomic # 8 Polarization: -38.10 SS G_CDS: -1.50 Total: -39.60 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 16 Polarization: -9.88 SS G_CDS: -1.26 Total: -11.13 kcal Total: -70.97 3.51 -67.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878947973.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.818 kcal (2) G-P(sol) polarization free energy of solvation -70.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds