Wall clock time and date at job start Sat Apr 11 2020 05:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.32210 * 119.81696 * 2 1 4 4 O 1.21260 * 122.89923 * 0.02562 * 3 2 1 5 5 C 1.51124 * 114.20512 * 180.25427 * 3 2 1 6 6 S 1.82381 * 103.49330 * 359.75554 * 5 3 2 7 7 C 1.36747 * 119.81835 * 179.77077 * 2 1 3 8 8 C 1.36445 * 126.26577 * 0.04157 * 7 2 1 9 9 C 1.40391 * 119.99988 * 179.71038 * 8 7 2 10 10 O 1.21912 * 119.99968 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00476 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00368 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.46925 * 180.02562 * 12 11 9 14 14 H 1.09001 * 109.49926 * 55.06125 * 13 12 11 15 15 C 1.53044 * 109.49545 * 175.16037 * 13 12 11 16 16 C 1.53045 * 109.53559 * 181.31570 * 15 13 12 17 17 C 1.53192 * 109.31492 * 298.63681 * 16 15 13 18 18 N 1.47201 * 108.85247 * 54.65007 * 17 16 15 19 19 C 1.36941 * 120.81053 * 126.34026 * 18 17 16 20 20 H 1.08010 * 119.99649 * 207.53228 * 19 18 17 21 21 C 1.38804 * 120.00378 * 27.53087 * 19 18 17 22 22 N 1.31624 * 120.00025 * 17.26718 * 21 19 18 23 23 Si 1.86801 * 120.00311 * 197.26803 * 21 19 18 24 24 H 1.48490 * 109.47145 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.46826 * 120.00101 * 23 21 19 26 26 H 1.48498 * 109.47107 * 239.99663 * 23 21 19 27 27 C 1.46928 * 118.56064 * 306.47866 * 18 17 16 28 28 H 1.09005 * 109.46791 * 270.22205 * 1 2 3 29 29 H 1.08997 * 109.47443 * 30.22456 * 1 2 3 30 30 H 1.09000 * 109.47070 * 150.22612 * 1 2 3 31 31 H 1.09000 * 110.61687 * 241.25416 * 5 3 2 32 32 H 1.08999 * 110.74915 * 118.31909 * 5 3 2 33 33 H 1.08000 * 119.99717 * 359.70856 * 8 7 2 34 34 H 0.97011 * 119.99294 * 0.02562 * 11 9 8 35 35 H 1.08997 * 109.47143 * 60.00449 * 12 11 9 36 36 H 1.08998 * 109.46696 * 299.99538 * 12 11 9 37 37 H 1.09001 * 109.46096 * 301.33382 * 15 13 12 38 38 H 1.08996 * 109.45999 * 61.31438 * 15 13 12 39 39 H 1.09000 * 109.49621 * 58.58643 * 16 15 13 40 40 H 1.09003 * 109.49716 * 178.65010 * 16 15 13 41 41 H 1.08993 * 109.58703 * 174.42473 * 17 16 15 42 42 H 1.09001 * 109.58389 * 294.71047 * 17 16 15 43 43 H 0.96996 * 120.00327 * 179.97438 * 22 21 19 44 44 H 1.08998 * 109.58611 * 293.68316 * 27 18 17 45 45 H 1.09000 * 109.59015 * 173.39820 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1224 1.1471 0.0000 4 8 1.5666 2.2248 0.0005 5 6 3.6264 0.9993 -0.0061 6 16 3.8765 -0.8073 -0.0035 7 6 2.1450 -1.1864 0.0047 8 6 1.5919 -2.4337 0.0089 9 6 2.4187 -3.5683 0.0074 10 8 3.6310 -3.4391 0.0019 11 7 1.8725 -4.8004 0.0121 12 6 2.7353 -5.9843 0.0100 13 6 1.8699 -7.2460 0.0156 14 1 1.1751 -7.2144 -0.8237 15 6 2.7660 -8.4805 -0.1084 16 6 1.8991 -9.7414 -0.1359 17 6 1.1126 -9.8444 1.1748 18 7 0.3571 -8.5971 1.3753 19 6 -0.9937 -8.6235 1.5986 20 1 -1.6050 -7.7804 1.3118 21 6 -1.5774 -9.7335 2.1934 22 7 -0.8308 -10.5999 2.8449 23 14 -3.4224 -9.9979 2.0692 24 1 -4.0301 -8.8892 1.2904 25 1 -3.6926 -11.2890 1.3870 26 1 -4.0113 -10.0256 3.4322 27 6 1.0832 -7.3206 1.3279 28 1 -0.3633 0.0040 1.0277 29 1 -0.3634 0.8879 -0.5173 30 1 -0.3633 -0.8920 -0.5103 31 1 4.0598 1.4481 0.8877 32 1 4.0545 1.4447 -0.9041 33 1 0.5179 -2.5481 0.0134 34 1 0.9078 -4.9031 0.0161 35 1 3.3687 -5.9738 0.8970 36 1 3.3602 -5.9767 -0.8831 37 1 3.3451 -8.4179 -1.0296 38 1 3.4435 -8.5245 0.7443 39 1 1.2041 -9.6869 -0.9738 40 1 2.5363 -10.6187 -0.2482 41 1 0.4209 -10.6849 1.1208 42 1 1.8035 -9.9924 2.0047 43 1 -1.2387 -11.3754 3.2608 44 1 1.7718 -7.2604 2.1706 45 1 0.3737 -6.4946 1.3760 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896632085.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:39 Heat of formation + Delta-G solvation = -18.437308 kcal Electronic energy + Delta-G solvation = -26810.955122 eV Core-core repulsion = 22955.998706 eV Total energy + Delta-G solvation = -3854.956416 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.47307 -39.84229 -37.89080 -37.29233 -34.80148 -33.02764 -32.10357 -31.43258 -30.46415 -30.23259 -27.46375 -25.87106 -25.29780 -23.84209 -22.11402 -21.04101 -20.62829 -20.21475 -19.13305 -18.48981 -17.31641 -17.15934 -16.94473 -16.52251 -15.99219 -15.28594 -15.03074 -14.85573 -14.68819 -14.44279 -14.19321 -13.96115 -13.64399 -13.43331 -13.23745 -12.91091 -12.79316 -12.47595 -12.37753 -12.30917 -12.17625 -11.90361 -11.54317 -11.28919 -11.04155 -10.84910 -10.73217 -10.49123 -10.22745 -10.18529 -9.94765 -9.76492 -9.54618 -9.43475 -9.29326 -8.95670 -8.49610 -8.00450 -6.70186 -5.81494 -3.23761 0.43584 0.79981 1.35929 1.89647 2.09989 3.30785 3.32983 3.34170 3.42078 3.43711 3.63970 4.45149 4.45566 4.56482 4.70068 4.80460 4.84806 5.07636 5.09829 5.24038 5.28898 5.33969 5.44225 5.46621 5.59187 5.64343 5.83782 5.97876 6.01540 6.24141 6.31902 6.33125 6.37700 6.54177 6.58576 6.69755 6.77262 6.85247 6.96124 7.01403 7.38373 7.62378 7.65948 7.75968 8.29334 8.41451 9.17758 9.81756 10.38890 11.26946 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016326 B = 0.002367 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.692004 B =11828.739753 C =13259.252767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.547 5.547 3 C 0.525 3.475 4 O -0.491 6.491 5 C -0.196 4.196 6 S 0.036 5.964 7 C 0.177 3.823 8 C -0.249 4.249 9 C 0.556 3.444 10 O -0.546 6.546 11 N -0.716 5.716 12 C 0.130 3.870 13 C -0.118 4.118 14 H 0.072 0.928 15 C -0.100 4.100 16 C -0.141 4.141 17 C 0.168 3.832 18 N -0.592 5.592 19 C -0.252 4.252 20 H 0.065 0.935 21 C 0.002 3.998 22 N -0.901 5.901 23 Si 0.901 3.099 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.291 1.291 27 C 0.154 3.846 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.403 0.597 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.047 0.953 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.049 0.951 41 H 0.086 0.914 42 H 0.018 0.982 43 H 0.253 0.747 44 H 0.018 0.982 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.148 18.987 -7.786 21.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.269 5.269 3 C 0.312 3.688 4 O -0.364 6.364 5 C -0.347 4.347 6 S 0.278 5.722 7 C -0.037 4.037 8 C -0.287 4.287 9 C 0.347 3.653 10 O -0.428 6.428 11 N -0.367 5.367 12 C 0.006 3.994 13 C -0.138 4.138 14 H 0.091 0.909 15 C -0.138 4.138 16 C -0.181 4.181 17 C 0.042 3.958 18 N -0.315 5.315 19 C -0.381 4.381 20 H 0.083 0.917 21 C -0.197 4.197 22 N -0.546 5.546 23 Si 0.731 3.269 24 H -0.203 1.203 25 H -0.216 1.216 26 H -0.218 1.218 27 C 0.027 3.973 28 H 0.096 0.904 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.162 0.838 32 H 0.162 0.838 33 H 0.164 0.836 34 H 0.238 0.762 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.105 0.895 42 H 0.036 0.964 43 H 0.063 0.937 44 H 0.036 0.964 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.760 19.001 -7.689 22.291 hybrid contribution -2.747 0.338 0.048 2.768 sum 6.013 19.339 -7.641 21.646 Atomic orbital electron populations 1.22164 0.76459 1.05162 1.04232 1.44668 1.09805 1.04816 1.67633 1.19840 0.89450 0.83460 0.76034 1.90817 1.72286 1.25953 1.47387 1.24753 0.95972 1.03398 1.10531 1.88104 0.98597 0.96187 1.89332 1.22422 0.95457 0.88204 0.97626 1.20674 1.01090 0.89259 1.17656 1.16153 0.87898 0.83573 0.77715 1.90783 1.14515 1.85781 1.51764 1.45833 1.10770 1.05436 1.74651 1.21435 0.92876 0.83362 1.01773 1.21950 0.97549 0.92667 1.01671 0.90915 1.21341 0.97261 0.94773 1.00409 1.22164 0.98434 0.95738 1.01728 1.20846 0.93757 0.90470 0.90714 1.44108 1.04661 0.99862 1.82819 1.19189 0.82462 1.03304 1.33194 0.91696 1.25031 0.97753 0.99519 0.97394 1.70046 1.34319 1.14482 1.35727 0.86248 0.85513 0.77813 0.77330 1.20292 1.21570 1.21766 1.20889 0.93934 0.89916 0.92525 0.90423 0.89062 0.89076 0.83810 0.83801 0.83631 0.76163 0.91525 0.91944 0.93432 0.92466 0.92781 0.93185 0.89548 0.96419 0.93673 0.96371 0.93199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.41 10.06 59.85 0.60 1.02 16 2 N -0.55 -4.84 2.95 -122.26 -0.36 -5.20 16 3 C 0.52 4.93 7.79 -11.91 -0.09 4.83 16 4 O -0.49 -5.86 16.94 5.57 0.09 -5.77 16 5 C -0.20 -1.35 7.36 36.21 0.27 -1.08 16 6 S 0.04 0.36 20.64 -107.50 -2.22 -1.86 16 7 C 0.18 1.77 7.00 -16.01 -0.11 1.66 16 8 C -0.25 -2.52 9.14 -39.42 -0.36 -2.88 16 9 C 0.56 7.24 7.52 -15.45 -0.12 7.12 16 10 O -0.55 -8.60 14.11 5.00 0.07 -8.53 16 11 N -0.72 -8.95 5.32 -63.57 -0.34 -9.29 16 12 C 0.13 1.80 5.07 -4.04 -0.02 1.78 16 13 C -0.12 -1.85 2.38 -90.50 -0.22 -2.07 16 14 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 15 C -0.10 -1.59 5.17 -26.69 -0.14 -1.73 16 16 C -0.14 -2.60 6.08 -26.61 -0.16 -2.76 16 17 C 0.17 3.89 5.33 -3.56 -0.02 3.87 16 18 N -0.59 -14.20 3.01 -172.10 -0.52 -14.72 16 19 C -0.25 -6.65 9.59 -15.06 -0.14 -6.79 16 20 H 0.07 1.66 7.89 -52.48 -0.41 1.25 16 21 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 22 N -0.90 -25.72 11.18 55.49 0.62 -25.10 16 23 Si 0.90 21.11 29.59 -169.99 -5.03 16.08 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 C 0.15 3.00 5.59 -3.71 -0.02 2.97 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.09 0.59 7.50 -51.93 -0.39 0.21 16 30 H 0.09 0.44 6.61 -51.93 -0.34 0.10 16 31 H 0.14 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.14 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.15 1.07 6.71 -52.49 -0.35 0.72 16 34 H 0.40 4.44 7.65 -40.82 -0.31 4.13 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.09 2.26 6.04 -51.93 -0.31 1.95 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 44 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.05 0.92 7.13 -51.93 -0.37 0.55 16 LS Contribution 373.58 15.07 5.63 5.63 Total: -1.00 -32.69 373.58 -9.37 -42.06 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -6.70 Total: 0.79 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: -0.62 Total: 5.90 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: -0.60 Total: -54.32 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: 0.16 Total: -14.30 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Atomic # 16 Polarization: 0.36 SS G_CDS: -2.22 Total: -1.86 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.69 -9.37 -42.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896632085.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.624 kcal (2) G-P(sol) polarization free energy of solvation -32.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds