Wall clock time and date at job start Sat Apr 11 2020 05:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.32210 * 119.81696 * 2 1 4 4 O 1.21260 * 122.89923 * 0.02562 * 3 2 1 5 5 C 1.51124 * 114.20512 * 180.25427 * 3 2 1 6 6 S 1.82381 * 103.49330 * 359.75554 * 5 3 2 7 7 C 1.36747 * 119.81835 * 179.77077 * 2 1 3 8 8 C 1.36445 * 126.26577 * 0.04157 * 7 2 1 9 9 C 1.40391 * 119.99988 * 179.71038 * 8 7 2 10 10 O 1.21912 * 119.99968 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00476 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00368 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.46925 * 180.02562 * 12 11 9 14 14 H 1.09001 * 109.49926 * 55.06125 * 13 12 11 15 15 C 1.53044 * 109.49545 * 175.16037 * 13 12 11 16 16 C 1.53045 * 109.53559 * 181.31570 * 15 13 12 17 17 C 1.53192 * 109.31492 * 298.63681 * 16 15 13 18 18 N 1.47201 * 108.85247 * 54.65007 * 17 16 15 19 19 C 1.36941 * 120.81053 * 126.34026 * 18 17 16 20 20 H 1.08010 * 119.99649 * 207.53228 * 19 18 17 21 21 C 1.38804 * 120.00378 * 27.53087 * 19 18 17 22 22 N 1.31624 * 120.00025 * 17.26718 * 21 19 18 23 23 Si 1.86801 * 120.00311 * 197.26803 * 21 19 18 24 24 H 1.48490 * 109.47145 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.46826 * 120.00101 * 23 21 19 26 26 H 1.48498 * 109.47107 * 239.99663 * 23 21 19 27 27 C 1.46928 * 118.56064 * 306.47866 * 18 17 16 28 28 H 1.09005 * 109.46791 * 270.22205 * 1 2 3 29 29 H 1.08997 * 109.47443 * 30.22456 * 1 2 3 30 30 H 1.09000 * 109.47070 * 150.22612 * 1 2 3 31 31 H 1.09000 * 110.61687 * 241.25416 * 5 3 2 32 32 H 1.08999 * 110.74915 * 118.31909 * 5 3 2 33 33 H 1.08000 * 119.99717 * 359.70856 * 8 7 2 34 34 H 0.97011 * 119.99294 * 0.02562 * 11 9 8 35 35 H 1.08997 * 109.47143 * 60.00449 * 12 11 9 36 36 H 1.08998 * 109.46696 * 299.99538 * 12 11 9 37 37 H 1.09001 * 109.46096 * 301.33382 * 15 13 12 38 38 H 1.08996 * 109.45999 * 61.31438 * 15 13 12 39 39 H 1.09000 * 109.49621 * 58.58643 * 16 15 13 40 40 H 1.09003 * 109.49716 * 178.65010 * 16 15 13 41 41 H 1.08993 * 109.58703 * 174.42473 * 17 16 15 42 42 H 1.09001 * 109.58389 * 294.71047 * 17 16 15 43 43 H 0.96996 * 120.00327 * 179.97438 * 22 21 19 44 44 H 1.08998 * 109.58611 * 293.68316 * 27 18 17 45 45 H 1.09000 * 109.59015 * 173.39820 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1224 1.1471 0.0000 4 8 1.5666 2.2248 0.0005 5 6 3.6264 0.9993 -0.0061 6 16 3.8765 -0.8073 -0.0035 7 6 2.1450 -1.1864 0.0047 8 6 1.5919 -2.4337 0.0089 9 6 2.4187 -3.5683 0.0074 10 8 3.6310 -3.4391 0.0019 11 7 1.8725 -4.8004 0.0121 12 6 2.7353 -5.9843 0.0100 13 6 1.8699 -7.2460 0.0156 14 1 1.1751 -7.2144 -0.8237 15 6 2.7660 -8.4805 -0.1084 16 6 1.8991 -9.7414 -0.1359 17 6 1.1126 -9.8444 1.1748 18 7 0.3571 -8.5971 1.3753 19 6 -0.9937 -8.6235 1.5986 20 1 -1.6050 -7.7804 1.3118 21 6 -1.5774 -9.7335 2.1934 22 7 -0.8308 -10.5999 2.8449 23 14 -3.4224 -9.9979 2.0692 24 1 -4.0301 -8.8892 1.2904 25 1 -3.6926 -11.2890 1.3870 26 1 -4.0113 -10.0256 3.4322 27 6 1.0832 -7.3206 1.3279 28 1 -0.3633 0.0040 1.0277 29 1 -0.3634 0.8879 -0.5173 30 1 -0.3633 -0.8920 -0.5103 31 1 4.0598 1.4481 0.8877 32 1 4.0545 1.4447 -0.9041 33 1 0.5179 -2.5481 0.0134 34 1 0.9078 -4.9031 0.0161 35 1 3.3687 -5.9738 0.8970 36 1 3.3602 -5.9767 -0.8831 37 1 3.3451 -8.4179 -1.0296 38 1 3.4435 -8.5245 0.7443 39 1 1.2041 -9.6869 -0.9738 40 1 2.5363 -10.6187 -0.2482 41 1 0.4209 -10.6849 1.1208 42 1 1.8035 -9.9924 2.0047 43 1 -1.2387 -11.3754 3.2608 44 1 1.7718 -7.2604 2.1706 45 1 0.3737 -6.4946 1.3760 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896632085.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:38 Heat of formation + Delta-G solvation = -39.541319 kcal Electronic energy + Delta-G solvation = -26811.870260 eV Core-core repulsion = 22955.998706 eV Total energy + Delta-G solvation = -3855.871555 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.19202 -40.86357 -39.33615 -38.12562 -36.17311 -34.61218 -32.98964 -32.26436 -32.11430 -31.56896 -28.12282 -27.24723 -26.91748 -24.83541 -23.76694 -22.46111 -21.58792 -21.01124 -20.55979 -19.32784 -18.63983 -18.03235 -17.83861 -17.68310 -16.90029 -16.78633 -16.39430 -15.85981 -15.73192 -15.45418 -15.34131 -15.00156 -14.91411 -14.85132 -14.46255 -13.96529 -13.93764 -13.69618 -13.53286 -13.39979 -13.17857 -12.97501 -12.87078 -12.66285 -12.48140 -12.27292 -12.19843 -11.92266 -11.77720 -11.67208 -11.52343 -11.23254 -11.05401 -10.63595 -10.51631 -10.07966 -9.95736 -8.78448 -8.65299 -7.84088 -5.28934 -0.35958 0.08986 0.70729 1.16838 1.40389 1.48093 1.50367 1.60199 2.37833 2.47647 2.53447 2.86658 3.30906 3.64675 3.98234 3.98875 4.04516 4.07956 4.08502 4.12851 4.29812 4.35766 4.40681 4.45520 4.56714 4.64713 4.68732 4.73977 4.83027 4.90682 4.94519 5.00758 5.05788 5.15258 5.28557 5.38377 5.45443 5.57037 5.61248 5.63323 5.70605 5.81728 6.30720 6.41641 6.67133 7.17389 7.33276 7.89341 8.41877 9.22587 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016326 B = 0.002367 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.692004 B =11828.739753 C =13259.252767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.546 5.546 3 C 0.522 3.478 4 O -0.519 6.519 5 C -0.178 4.178 6 S -0.004 6.004 7 C 0.184 3.816 8 C -0.255 4.255 9 C 0.553 3.447 10 O -0.578 6.578 11 N -0.714 5.714 12 C 0.142 3.858 13 C -0.100 4.100 14 H 0.077 0.923 15 C -0.098 4.098 16 C -0.130 4.130 17 C 0.171 3.829 18 N -0.610 5.610 19 C -0.256 4.256 20 H 0.073 0.927 21 C -0.055 4.055 22 N -0.938 5.938 23 Si 0.965 3.035 24 H -0.262 1.262 25 H -0.293 1.293 26 H -0.296 1.296 27 C 0.153 3.847 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.110 0.890 31 H 0.165 0.835 32 H 0.167 0.833 33 H 0.174 0.826 34 H 0.411 0.589 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.067 0.933 41 H 0.051 0.949 42 H -0.008 1.008 43 H 0.248 0.752 44 H 0.004 0.996 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.953 20.703 -9.302 23.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.267 5.267 3 C 0.311 3.689 4 O -0.395 6.395 5 C -0.328 4.328 6 S 0.238 5.762 7 C -0.031 4.031 8 C -0.293 4.293 9 C 0.345 3.655 10 O -0.463 6.463 11 N -0.365 5.365 12 C 0.017 3.983 13 C -0.120 4.120 14 H 0.095 0.905 15 C -0.136 4.136 16 C -0.169 4.169 17 C 0.046 3.954 18 N -0.333 5.333 19 C -0.386 4.386 20 H 0.091 0.909 21 C -0.250 4.250 22 N -0.585 5.585 23 Si 0.794 3.206 24 H -0.186 1.186 25 H -0.220 1.220 26 H -0.223 1.223 27 C 0.027 3.973 28 H 0.103 0.897 29 H 0.108 0.892 30 H 0.128 0.872 31 H 0.183 0.817 32 H 0.185 0.815 33 H 0.191 0.809 34 H 0.248 0.752 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.069 0.931 42 H 0.010 0.990 43 H 0.057 0.943 44 H 0.022 0.978 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.560 20.737 -9.225 24.257 hybrid contribution -2.636 -0.110 0.555 2.696 sum 5.924 20.627 -8.671 23.146 Atomic orbital electron populations 1.22378 0.75181 1.06100 1.05037 1.44778 1.10739 1.04352 1.66866 1.20198 0.90360 0.83103 0.75266 1.90812 1.72976 1.26827 1.48904 1.24845 0.94450 1.00804 1.12689 1.88235 0.99568 0.99217 1.89141 1.22440 0.95265 0.88553 0.96833 1.20676 1.02103 0.88219 1.18348 1.16495 0.87755 0.84157 0.77083 1.90783 1.15937 1.86321 1.53209 1.45759 1.11057 1.05030 1.74625 1.21194 0.92487 0.82921 1.01672 1.21706 0.97327 0.93710 0.99251 0.90451 1.21342 0.96954 0.93315 1.01960 1.21992 0.98428 0.98052 0.98403 1.20680 0.92861 0.89399 0.92505 1.44389 1.04493 1.01470 1.82981 1.19588 0.83901 1.03242 1.31858 0.90916 1.25799 1.01754 0.99725 0.97759 1.70207 1.35923 1.15024 1.37310 0.85235 0.80777 0.77733 0.76879 1.18572 1.22036 1.22345 1.21023 0.93923 0.88218 0.94113 0.89697 0.89170 0.87168 0.81731 0.81500 0.80873 0.75210 0.92682 0.91034 0.90178 0.92770 0.92793 0.91394 0.93083 0.99019 0.94308 0.97820 0.92293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.61 10.06 127.77 1.29 1.90 16 2 N -0.55 -8.63 2.95 -660.54 -1.95 -10.58 16 3 C 0.52 8.88 7.79 88.19 0.69 9.57 16 4 O -0.52 -11.69 16.94 -2.97 -0.05 -11.74 16 5 C -0.18 -2.06 7.36 71.37 0.53 -1.54 16 6 S 0.00 -0.07 20.64 -56.49 -1.17 -1.24 16 7 C 0.18 3.36 7.00 83.51 0.58 3.94 16 8 C -0.26 -4.65 9.14 22.38 0.20 -4.44 16 9 C 0.55 13.49 7.52 84.77 0.64 14.13 16 10 O -0.58 -17.63 14.11 -5.03 -0.07 -17.70 16 11 N -0.71 -16.41 5.32 -473.16 -2.52 -18.92 16 12 C 0.14 3.65 5.07 86.38 0.44 4.09 16 13 C -0.10 -2.93 2.38 -10.72 -0.03 -2.96 16 14 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 15 C -0.10 -2.90 5.17 30.62 0.16 -2.74 16 16 C -0.13 -4.61 6.08 30.67 0.19 -4.43 16 17 C 0.17 8.11 5.33 86.31 0.46 8.57 16 18 N -0.61 -29.39 3.01 -698.40 -2.10 -31.49 16 19 C -0.26 -13.48 9.59 84.03 0.81 -12.68 16 20 H 0.07 3.64 7.89 -2.91 -0.02 3.62 16 21 C -0.06 -3.03 4.92 84.86 0.42 -2.62 16 22 N -0.94 -55.20 11.18 21.65 0.24 -54.95 16 23 Si 0.97 43.76 29.59 68.60 2.03 45.79 16 24 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 25 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 26 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 27 C 0.15 5.83 5.59 86.36 0.48 6.31 16 28 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.09 1.03 7.50 -2.39 -0.02 1.02 16 30 H 0.11 0.76 6.61 -2.39 -0.02 0.74 16 31 H 0.17 1.26 8.14 -2.39 -0.02 1.25 16 32 H 0.17 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.17 2.02 6.71 -2.91 -0.02 2.00 16 34 H 0.41 8.07 7.65 -92.70 -0.71 7.37 16 35 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.05 2.76 6.04 -2.39 -0.01 2.75 16 42 H -0.01 -0.43 8.14 -2.39 -0.02 -0.44 16 43 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 44 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 45 H 0.06 2.10 7.13 -2.39 -0.02 2.08 16 Total: -1.00 -72.14 373.58 1.57 -70.57 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 0.30 Total: 13.16 kcal Atomic # 6 Polarization: 10.25 SS G_CDS: 6.85 Total: 17.10 kcal Atomic # 7 Polarization: -109.62 SS G_CDS: -6.32 Total: -115.94 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: -0.12 Total: -29.45 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: -0.07 SS G_CDS: -1.17 Total: -1.24 kcal Total: -72.14 1.57 -70.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896632085.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.029 kcal (2) G-P(sol) polarization free energy of solvation -72.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds