Wall clock time and date at job start Sat Apr 11 2020 05:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34226 * 117.00034 * 2 1 4 4 O 1.20829 * 119.99821 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00092 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.46959 * 59.99932 * 5 3 2 7 7 C 1.52997 * 109.47078 * 300.00020 * 5 3 2 8 8 C 1.53002 * 109.46817 * 180.02562 * 7 5 3 9 9 C 1.53000 * 109.47233 * 60.00194 * 8 7 5 10 10 C 1.52997 * 109.47060 * 299.99657 * 9 8 7 11 11 C 1.52999 * 109.47317 * 59.99960 * 10 9 8 12 12 H 1.09000 * 109.47486 * 180.02562 * 11 10 9 13 13 C 1.53006 * 109.46997 * 60.00177 * 11 10 9 14 14 S 1.80996 * 109.46952 * 64.99801 * 13 11 10 15 15 C 1.76204 * 99.99992 * 180.02562 * 14 13 11 16 16 N 1.32390 * 126.25580 * 0.03018 * 15 14 13 17 17 N 1.28514 * 110.20200 * 179.97438 * 16 15 14 18 18 C 1.33095 * 109.74623 * 0.02562 * 17 16 15 19 19 C 1.39781 * 126.56395 * 180.02562 * 18 17 16 20 20 H 1.07996 * 119.99816 * 179.97438 * 19 18 17 21 21 C 1.40076 * 120.00062 * 359.97438 * 19 18 17 22 22 N 1.30816 * 120.00177 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00085 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47068 * 89.99836 * 23 21 19 25 25 H 1.48502 * 109.47346 * 209.99702 * 23 21 19 26 26 H 1.48493 * 109.46975 * 329.99918 * 23 21 19 27 27 N 1.36670 * 126.25984 * 179.71609 * 15 14 13 28 28 C 1.46501 * 127.15294 * 359.97000 * 27 15 14 29 29 H 1.09001 * 109.47333 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47079 * 300.00126 * 1 2 3 31 31 H 1.09002 * 109.47347 * 59.99979 * 1 2 3 32 32 H 1.08993 * 109.47194 * 59.99505 * 7 5 3 33 33 H 1.09002 * 109.46695 * 299.99519 * 7 5 3 34 34 H 1.08992 * 109.47063 * 299.99823 * 8 7 5 35 35 H 1.09004 * 109.46733 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.47398 * 59.99826 * 9 8 7 37 37 H 1.09001 * 109.47194 * 180.02562 * 9 8 7 38 38 H 1.08996 * 109.47853 * 180.02562 * 10 9 8 39 39 H 1.09002 * 109.47153 * 300.00319 * 10 9 8 40 40 H 1.08995 * 109.47123 * 185.00395 * 13 11 10 41 41 H 1.09005 * 109.46600 * 305.00222 * 13 11 10 42 42 H 0.97004 * 120.00270 * 179.97438 * 22 21 19 43 43 H 1.08998 * 109.46540 * 90.02284 * 28 27 15 44 44 H 1.08995 * 109.46944 * 210.02358 * 28 27 15 45 45 H 1.09004 * 109.46797 * 330.03021 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9557 0.7809 -0.8908 7 6 4.1139 0.5810 1.2483 8 6 5.6418 0.6617 1.2479 9 6 6.0750 2.1291 1.2484 10 6 5.5275 2.8229 -0.0004 11 6 3.9996 2.7423 -0.0002 12 1 3.6095 3.2362 -0.8902 13 6 3.4525 3.4352 1.2494 14 16 3.8388 5.2020 1.1774 15 6 3.1157 5.7353 2.6932 16 7 2.4863 4.9710 3.5720 17 7 2.0826 5.6780 4.5663 18 6 2.4306 6.9497 4.3845 19 6 2.1686 8.0165 5.2490 20 1 2.5023 9.0117 4.9951 21 6 1.4733 7.7946 6.4446 22 7 1.0687 6.5891 6.7519 23 14 1.1226 9.2203 7.5995 24 1 -0.1818 9.8351 7.2450 25 1 1.0718 8.7235 8.9981 26 1 2.1989 10.2355 7.4736 27 7 3.1073 7.0125 3.1795 28 6 3.6914 8.2014 2.5536 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 3.8048 -0.4642 1.2482 33 1 3.7245 1.0751 2.1385 34 1 6.0314 0.1681 0.3578 35 1 6.0318 0.1678 2.1379 36 1 5.6853 2.6228 2.1387 37 1 7.1635 2.1866 1.2477 38 1 5.8364 3.8682 -0.0004 39 1 5.9172 2.3292 -0.8907 40 1 2.3718 3.3011 1.2955 41 1 3.9110 2.9989 2.1369 42 1 0.5875 6.4354 7.5801 43 1 2.9490 8.6759 1.9119 44 1 4.0044 8.9025 3.3272 45 1 4.5552 7.9101 1.9560 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000901547809.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:56 Heat of formation + Delta-G solvation = -35.047685 kcal Electronic energy + Delta-G solvation = -27724.158537 eV Core-core repulsion = 23868.481841 eV Total energy + Delta-G solvation = -3855.676696 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.95100 -40.42362 -38.68779 -36.42049 -33.64190 -33.26026 -31.98261 -31.54800 -29.28360 -28.01293 -26.99798 -26.33993 -25.37836 -23.68654 -22.42668 -20.95487 -20.75083 -20.44392 -18.71091 -17.59079 -17.28654 -16.82388 -16.54088 -15.97685 -15.51747 -15.25495 -14.93852 -14.59214 -14.39266 -14.20371 -13.83883 -13.40016 -13.27998 -13.17764 -13.10836 -12.64446 -12.31898 -12.25220 -12.14655 -12.03866 -11.73748 -11.45011 -11.28656 -11.25976 -11.09417 -10.89023 -10.82709 -10.77609 -10.51438 -10.37296 -10.29302 -10.03707 -9.79510 -9.62091 -9.54197 -8.61121 -8.31725 -8.29794 -6.70707 -6.60186 -4.51457 2.17995 2.21585 2.65406 2.95164 2.98160 3.08532 3.12031 3.43146 3.90856 4.30204 4.43752 4.49047 4.49439 4.57717 4.97915 5.03746 5.03794 5.06598 5.14223 5.16038 5.26979 5.29208 5.38229 5.46445 5.49512 5.60169 5.63291 5.70434 5.88524 5.93676 5.96124 5.99875 6.08462 6.08962 6.16124 6.19070 6.26511 6.41939 6.62676 6.85533 6.94472 7.29774 7.55591 7.75416 7.96852 8.22901 8.75377 8.92451 10.32581 10.72069 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014578 B = 0.003124 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.288421 B = 8960.781194 C = 9789.164115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.361 6.361 3 C 0.458 3.542 4 O -0.488 6.488 5 C -0.065 4.065 6 H 0.111 0.889 7 C -0.117 4.117 8 C -0.114 4.114 9 C -0.127 4.127 10 C -0.114 4.114 11 C -0.058 4.058 12 H 0.085 0.915 13 C -0.098 4.098 14 S -0.060 6.060 15 C 0.052 3.948 16 N -0.286 5.286 17 N -0.334 5.334 18 C 0.345 3.655 19 C -0.449 4.449 20 H 0.083 0.917 21 C 0.079 3.921 22 N -0.738 5.738 23 Si 0.920 3.080 24 H -0.269 1.269 25 H -0.275 1.275 26 H -0.263 1.263 27 N -0.516 5.516 28 C 0.102 3.898 29 H 0.099 0.901 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.110 0.890 41 H 0.090 0.910 42 H 0.278 0.722 43 H 0.055 0.945 44 H 0.077 0.923 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.931 -10.451 -13.403 18.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.278 6.278 3 C 0.300 3.700 4 O -0.374 6.374 5 C -0.086 4.086 6 H 0.129 0.871 7 C -0.155 4.155 8 C -0.152 4.152 9 C -0.165 4.165 10 C -0.152 4.152 11 C -0.078 4.078 12 H 0.104 0.896 13 C -0.247 4.247 14 S 0.168 5.832 15 C -0.320 4.320 16 N -0.132 5.132 17 N -0.181 5.181 18 C 0.100 3.900 19 C -0.489 4.489 20 H 0.101 0.899 21 C -0.146 4.146 22 N -0.362 5.362 23 Si 0.744 3.256 24 H -0.194 1.194 25 H -0.200 1.200 26 H -0.187 1.187 27 N -0.218 5.218 28 C -0.043 4.043 29 H 0.117 0.883 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.128 0.872 41 H 0.109 0.891 42 H 0.089 0.911 43 H 0.073 0.927 44 H 0.096 0.904 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.563 -10.943 -13.439 18.532 hybrid contribution -0.671 1.364 0.947 1.791 sum 5.892 -9.579 -12.492 16.809 Atomic orbital electron populations 1.23264 0.76435 1.03453 1.02824 1.86477 1.23358 1.33671 1.84293 1.23855 0.92114 0.81394 0.72646 1.90700 1.67010 1.35894 1.43791 1.21095 0.86850 0.98469 1.02182 0.87110 1.21618 0.96524 1.00803 0.96550 1.21509 0.94433 0.97077 1.02136 1.21631 1.00459 0.95289 0.99078 1.21624 0.93317 1.01921 0.98298 1.20849 0.96186 0.92184 0.98612 0.89629 1.23753 1.07117 0.93394 1.00416 1.84132 1.71995 1.07354 1.19737 1.25379 1.16643 0.86261 1.03730 1.74538 1.10957 1.27841 0.99880 1.75450 1.27059 0.99649 1.15991 1.21618 0.90406 0.95198 0.82759 1.18086 1.35224 0.93089 1.02505 0.89881 1.25782 0.94160 0.96789 0.97916 1.70020 1.24027 1.20867 1.21314 0.86136 0.79585 0.80877 0.79018 1.19410 1.20021 1.18679 1.46053 1.49726 1.06236 1.19812 1.21476 0.97640 0.87082 0.98072 0.88286 0.91592 0.92002 0.90560 0.90469 0.91804 0.91396 0.90836 0.91693 0.90325 0.91663 0.87161 0.89131 0.91077 0.92657 0.90445 0.91550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 101.05 1.07 1.41 16 2 O -0.36 -4.32 10.47 -39.25 -0.41 -4.73 16 3 C 0.46 6.19 6.93 36.01 0.25 6.44 16 4 O -0.49 -8.37 13.42 -18.75 -0.25 -8.63 16 5 C -0.07 -0.71 2.41 -91.77 -0.22 -0.93 16 6 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 7 C -0.12 -1.21 4.86 -26.73 -0.13 -1.34 16 8 C -0.11 -1.01 5.92 -26.73 -0.16 -1.17 16 9 C -0.13 -1.32 5.65 -26.73 -0.15 -1.47 16 10 C -0.11 -1.19 5.27 -26.73 -0.14 -1.33 16 11 C -0.06 -0.73 1.83 -90.61 -0.17 -0.90 16 12 H 0.09 1.10 8.10 -51.93 -0.42 0.68 16 13 C -0.10 -1.68 3.70 37.16 0.14 -1.54 16 14 S -0.06 -1.13 20.59 -107.50 -2.21 -3.35 16 15 C 0.05 1.31 8.09 -87.28 -0.71 0.60 16 16 N -0.29 -8.21 11.62 30.89 0.36 -7.85 16 17 N -0.33 -10.40 10.48 31.26 0.33 -10.08 16 18 C 0.35 9.98 7.53 -154.81 -1.17 8.81 16 19 C -0.45 -12.24 9.04 -38.32 -0.35 -12.58 16 20 H 0.08 2.05 7.31 -52.49 -0.38 1.67 16 21 C 0.08 2.06 5.50 -17.30 -0.10 1.97 16 22 N -0.74 -20.80 11.94 55.56 0.66 -20.13 16 23 Si 0.92 18.95 29.56 -169.99 -5.03 13.93 16 24 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 25 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 26 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 27 N -0.52 -13.00 3.26 -123.18 -0.40 -13.40 16 28 C 0.10 1.96 10.87 59.85 0.65 2.61 16 29 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.73 8.13 -51.93 -0.42 0.31 16 31 H 0.06 0.60 8.13 -51.93 -0.42 0.17 16 32 H 0.08 0.70 8.11 -51.93 -0.42 0.27 16 33 H 0.08 0.98 6.54 -51.93 -0.34 0.64 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.96 6.32 -51.93 -0.33 0.63 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.89 7.13 -51.93 -0.37 0.52 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.11 2.24 5.42 -51.92 -0.28 1.96 16 41 H 0.09 1.61 4.83 -51.91 -0.25 1.36 16 42 H 0.28 7.07 8.30 -40.82 -0.34 6.73 16 43 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.08 1.38 7.53 -51.93 -0.39 0.99 16 45 H 0.07 1.11 7.85 -51.93 -0.41 0.70 16 LS Contribution 371.52 15.07 5.60 5.60 Total: -1.00 -35.62 371.52 -9.06 -44.68 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -6.53 Total: 3.40 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -1.18 Total: 0.56 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: 0.95 Total: -51.47 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: -0.66 Total: -13.35 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.93 kcal Atomic # 16 Polarization: -1.13 SS G_CDS: -2.21 Total: -3.35 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.62 -9.06 -44.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901547809.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.636 kcal (2) G-P(sol) polarization free energy of solvation -35.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds