Wall clock time and date at job start Sat Apr 11 2020 05:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34226 * 116.99976 * 2 1 4 4 O 1.20830 * 120.00352 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00204 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.47574 * 300.00689 * 5 3 2 7 7 C 1.53004 * 109.47004 * 60.00157 * 5 3 2 8 8 C 1.52998 * 109.47477 * 180.02562 * 7 5 3 9 9 C 1.52996 * 109.46896 * 300.00047 * 8 7 5 10 10 C 1.53000 * 109.47456 * 60.00087 * 9 8 7 11 11 C 1.53003 * 109.47369 * 179.97438 * 5 3 2 12 12 H 1.08994 * 109.47209 * 300.00270 * 11 5 3 13 13 C 1.52995 * 109.46679 * 60.00585 * 11 5 3 14 14 S 1.81003 * 109.46966 * 184.99983 * 13 11 5 15 15 C 1.76200 * 100.00228 * 179.97438 * 14 13 11 16 16 N 1.32394 * 126.25543 * 359.97438 * 15 14 13 17 17 N 1.28516 * 110.20120 * 180.02562 * 16 15 14 18 18 C 1.33101 * 109.74768 * 359.97438 * 17 16 15 19 19 C 1.39775 * 126.56652 * 179.97438 * 18 17 16 20 20 H 1.07998 * 119.99941 * 179.97438 * 19 18 17 21 21 C 1.40083 * 119.99967 * 0.02562 * 19 18 17 22 22 N 1.30820 * 119.99801 * 359.97438 * 21 19 18 23 23 Si 1.86791 * 120.00146 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47250 * 89.99738 * 23 21 19 25 25 H 1.48503 * 109.47287 * 209.99628 * 23 21 19 26 26 H 1.48506 * 109.47069 * 329.99448 * 23 21 19 27 27 N 1.36665 * 126.25885 * 179.97438 * 15 14 13 28 28 C 1.46496 * 127.15580 * 359.97438 * 27 15 14 29 29 H 1.09001 * 109.46977 * 300.00156 * 1 2 3 30 30 H 1.09009 * 109.47117 * 59.99733 * 1 2 3 31 31 H 1.08998 * 109.47182 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47005 * 59.99673 * 7 5 3 33 33 H 1.09007 * 109.47138 * 300.00618 * 7 5 3 34 34 H 1.08995 * 109.47079 * 180.02562 * 8 7 5 35 35 H 1.08994 * 109.47062 * 59.99782 * 8 7 5 36 36 H 1.09000 * 109.47728 * 299.99748 * 9 8 7 37 37 H 1.09001 * 109.47176 * 179.97438 * 9 8 7 38 38 H 1.08999 * 109.47898 * 179.97438 * 10 9 8 39 39 H 1.09000 * 109.47414 * 59.99386 * 10 9 8 40 40 H 1.08998 * 109.47752 * 65.00191 * 13 11 5 41 41 H 1.09003 * 109.47392 * 304.99256 * 13 11 5 42 42 H 0.96995 * 119.99912 * 179.97438 * 22 21 19 43 43 H 1.09007 * 109.46952 * 89.97555 * 28 27 15 44 44 H 1.08996 * 109.47675 * 209.97271 * 28 27 15 45 45 H 1.08999 * 109.47351 * 329.97889 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9558 0.7809 0.8907 7 6 4.1138 0.5811 -1.2484 8 6 5.6418 0.6606 -1.2476 9 6 6.0760 2.1276 -1.2473 10 6 5.5286 2.8215 0.0016 11 6 4.0001 2.7421 -0.0002 12 1 3.6107 3.2357 -0.8906 13 6 3.4526 3.4364 1.2484 14 16 3.8395 5.2030 1.1751 15 6 3.1145 5.7382 2.6892 16 7 2.4828 4.9752 3.5675 17 7 2.0772 5.6836 4.5602 18 6 2.4273 6.9548 4.3782 19 6 2.1635 8.0228 5.2405 20 1 2.4992 9.0174 4.9867 21 6 1.4646 7.8028 6.4345 22 7 1.0585 6.5979 6.7422 23 14 1.1127 9.2299 7.5872 24 1 -0.1899 9.8462 7.2287 25 1 1.0574 8.7343 8.9860 26 1 2.1908 10.2437 7.4635 27 7 3.1016 7.0168 3.1716 28 6 3.6812 8.2059 2.5422 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.7244 1.0750 -2.1386 33 1 3.8047 -0.4642 -1.2484 34 1 6.0317 0.1668 -2.1375 35 1 6.0308 0.1664 -0.3574 36 1 5.6870 2.6220 -2.1375 37 1 7.1646 2.1843 -1.2463 38 1 5.8383 3.8665 0.0020 39 1 5.9176 2.3272 0.8918 40 1 3.9104 3.0008 2.1366 41 1 2.3718 3.3028 1.2940 42 1 0.5749 6.4455 7.5691 43 1 2.9373 8.6755 1.8985 44 1 3.9910 8.9110 3.3136 45 1 4.5466 7.9163 1.9461 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000901547810.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:58 Heat of formation + Delta-G solvation = -60.580985 kcal Electronic energy + Delta-G solvation = -27337.345316 eV Core-core repulsion = 23480.561413 eV Total energy + Delta-G solvation = -3856.783903 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.46265 -41.92598 -39.40696 -37.50036 -35.64228 -35.18246 -33.60402 -32.41134 -31.33076 -28.86486 -28.35691 -27.72505 -27.18131 -24.63093 -22.98355 -22.79347 -22.24575 -21.66468 -20.75034 -19.27594 -18.60923 -17.93060 -17.81447 -17.38560 -17.19977 -16.59288 -16.27131 -15.88783 -15.66731 -15.39511 -15.00994 -14.96749 -14.83757 -14.36092 -13.99296 -13.82854 -13.68160 -13.61482 -13.33807 -13.15280 -12.97475 -12.89161 -12.84161 -12.75742 -12.31444 -12.14308 -11.99412 -11.82103 -11.81233 -11.76714 -11.65578 -11.45322 -11.39042 -11.06408 -10.92413 -10.57284 -10.36597 -10.25920 -8.55812 -8.49362 -6.60272 0.49053 1.13537 1.18620 1.30758 1.39692 1.56857 1.60728 1.71972 2.17281 2.43500 2.50145 3.32414 3.46595 3.51990 3.65948 3.96039 4.05975 4.16097 4.24372 4.26801 4.27648 4.30450 4.33665 4.42621 4.43585 4.50797 4.57244 4.58854 4.66966 4.84976 4.88421 4.93844 4.97449 5.00702 5.13158 5.24255 5.26739 5.30365 5.33708 5.39350 5.46301 5.55108 5.58483 6.02135 6.20172 6.70110 6.73870 6.91344 8.40120 8.63314 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016147 B = 0.002888 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.690371 B = 9691.839378 C =10931.625775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.358 6.358 3 C 0.456 3.544 4 O -0.532 6.532 5 C -0.066 4.066 6 H 0.123 0.877 7 C -0.101 4.101 8 C -0.114 4.114 9 C -0.117 4.117 10 C -0.115 4.115 11 C -0.045 4.045 12 H 0.081 0.919 13 C -0.097 4.097 14 S -0.003 6.003 15 C 0.054 3.946 16 N -0.335 5.335 17 N -0.391 5.391 18 C 0.316 3.684 19 C -0.472 4.472 20 H 0.104 0.896 21 C 0.027 3.973 22 N -0.790 5.790 23 Si 1.010 2.990 24 H -0.262 1.262 25 H -0.270 1.270 26 H -0.246 1.246 27 N -0.523 5.523 28 C 0.094 3.906 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.136 0.864 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.284 0.716 43 H 0.071 0.929 44 H 0.090 0.910 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.786 -10.206 -16.947 21.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.274 6.274 3 C 0.300 3.700 4 O -0.422 6.422 5 C -0.087 4.087 6 H 0.141 0.859 7 C -0.139 4.139 8 C -0.151 4.151 9 C -0.155 4.155 10 C -0.153 4.153 11 C -0.066 4.066 12 H 0.100 0.900 13 C -0.246 4.246 14 S 0.224 5.776 15 C -0.319 4.319 16 N -0.179 5.179 17 N -0.237 5.237 18 C 0.069 3.931 19 C -0.512 4.512 20 H 0.122 0.878 21 C -0.194 4.194 22 N -0.415 5.415 23 Si 0.828 3.172 24 H -0.186 1.186 25 H -0.195 1.195 26 H -0.169 1.169 27 N -0.224 5.224 28 C -0.049 4.049 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.154 0.846 32 H 0.087 0.913 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.109 0.891 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.434 -10.709 -17.011 21.798 hybrid contribution -1.217 1.173 1.420 2.208 sum 7.217 -9.536 -15.591 19.649 Atomic orbital electron populations 1.23501 0.75383 1.05650 1.01999 1.86475 1.24440 1.32758 1.83735 1.24425 0.93135 0.81131 0.71260 1.90688 1.68138 1.37329 1.46020 1.21254 0.85247 0.97671 1.04505 0.85941 1.21547 0.97324 1.01098 0.93941 1.21555 0.93235 0.96535 1.03766 1.21573 1.01414 0.95702 0.96765 1.21715 0.91339 1.01990 1.00257 1.20853 0.97575 0.92647 0.95500 0.90039 1.23760 1.05546 0.93050 1.02231 1.83866 1.70218 1.07958 1.15523 1.26553 1.14020 0.86314 1.05052 1.74415 1.13473 1.28973 1.01045 1.75299 1.29259 1.01283 1.17899 1.22082 0.91407 0.95197 0.84413 1.18637 1.35739 0.93555 1.03306 0.87799 1.27048 0.92973 0.99980 0.99370 1.70178 1.25031 1.23991 1.22318 0.84817 0.79852 0.76574 0.75966 1.18618 1.19462 1.16877 1.46398 1.49396 1.07569 1.19073 1.21851 0.98862 0.85453 0.98728 0.93494 0.91833 0.84561 0.91263 0.89061 0.89359 0.90759 0.91545 0.90049 0.91166 0.90914 0.90898 0.90095 0.90572 0.91001 0.89139 0.88975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.56 113.37 1.20 1.75 16 2 O -0.36 -8.40 10.47 -51.38 -0.54 -8.94 16 3 C 0.46 12.49 6.94 71.23 0.49 12.98 16 4 O -0.53 -19.15 13.42 21.95 0.29 -18.86 16 5 C -0.07 -1.38 2.16 -11.54 -0.02 -1.40 16 6 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 7 C -0.10 -1.39 5.13 30.59 0.16 -1.23 16 8 C -0.11 -1.18 5.92 30.59 0.18 -1.00 16 9 C -0.12 -1.50 5.92 30.59 0.18 -1.32 16 10 C -0.12 -2.20 5.03 30.61 0.15 -2.05 16 11 C -0.05 -1.12 1.36 -10.78 -0.01 -1.13 16 12 H 0.08 2.10 8.10 -2.39 -0.02 2.08 16 13 C -0.10 -3.43 4.40 71.98 0.32 -3.11 16 14 S 0.00 -0.11 20.59 -56.49 -1.16 -1.27 16 15 C 0.05 2.83 8.09 179.18 1.45 4.28 16 16 N -0.33 -20.38 11.62 -56.17 -0.65 -21.04 16 17 N -0.39 -25.83 10.48 -55.01 -0.58 -26.40 16 18 C 0.32 18.97 7.53 133.23 1.00 19.97 16 19 C -0.47 -26.25 9.05 23.09 0.21 -26.04 16 20 H 0.10 5.10 7.30 -2.91 -0.02 5.07 16 21 C 0.03 1.42 5.50 85.29 0.47 1.89 16 22 N -0.79 -46.46 11.94 21.86 0.26 -46.20 16 23 Si 1.01 38.92 29.56 68.60 2.03 40.95 16 24 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 25 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 26 H -0.25 -8.71 7.11 99.48 0.71 -8.00 16 27 N -0.52 -26.82 3.26 -543.62 -1.77 -28.59 16 28 C 0.09 3.47 10.88 127.77 1.39 4.86 16 29 H 0.05 1.11 8.13 -2.39 -0.02 1.09 16 30 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.14 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.09 1.05 8.11 -2.38 -0.02 1.03 16 34 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.07 1.47 7.13 -2.39 -0.02 1.46 16 39 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.07 2.72 8.14 -2.40 -0.02 2.70 16 41 H 0.08 3.48 5.42 -2.39 -0.01 3.47 16 42 H 0.28 15.05 8.30 -92.71 -0.77 14.28 16 43 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 44 H 0.09 3.10 7.52 -2.39 -0.02 3.08 16 45 H 0.09 2.89 7.85 -2.39 -0.02 2.88 16 Total: -1.00 -84.37 378.53 6.04 -78.34 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: 0.99 Total: 23.57 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: 7.16 Total: 8.44 kcal Atomic # 7 Polarization: -119.49 SS G_CDS: -2.74 Total: -122.23 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -0.24 Total: -27.80 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 2.03 Total: 40.95 kcal Atomic # 16 Polarization: -0.11 SS G_CDS: -1.16 Total: -1.27 kcal Total: -84.37 6.04 -78.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901547810.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.758 kcal (2) G-P(sol) polarization free energy of solvation -84.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds