Wall clock time and date at job start Sat Apr 11 2020 05:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46496 * 109.47213 * 2 1 4 4 C 1.46496 * 120.00396 * 275.00260 * 3 2 1 5 5 C 1.50699 * 109.47346 * 275.34734 * 4 3 2 6 6 H 1.08002 * 119.99840 * 4.78306 * 5 4 3 7 7 C 1.37876 * 120.00308 * 184.77717 * 5 4 3 8 8 N 1.31515 * 119.99796 * 5.70837 * 7 5 4 9 9 Si 1.86796 * 120.00126 * 185.70979 * 7 5 4 10 10 H 1.48507 * 109.47201 * 94.97977 * 9 7 5 11 11 H 1.48498 * 109.47248 * 214.98189 * 9 7 5 12 12 H 1.48503 * 109.47154 * 334.98320 * 9 7 5 13 13 S 1.65604 * 119.99564 * 95.00211 * 3 2 1 14 14 O 1.42101 * 106.40174 * 341.04655 * 13 3 2 15 15 O 1.42098 * 106.40077 * 208.13187 * 13 3 2 16 16 N 1.65596 * 107.21837 * 94.59108 * 13 3 2 17 17 C 1.46497 * 119.99988 * 299.99633 * 16 13 3 18 18 H 1.08999 * 109.46786 * 8.70935 * 17 16 13 19 19 C 1.50704 * 109.46850 * 128.70655 * 17 16 13 20 20 C 1.38656 * 120.78932 * 219.99837 * 19 17 16 21 21 C 1.38204 * 119.16103 * 180.02562 * 20 19 17 22 22 N 1.31863 * 120.76554 * 0.25704 * 21 20 19 23 23 C 1.31871 * 121.72535 * 359.47356 * 22 21 20 24 24 C 1.38200 * 120.76362 * 0.52566 * 23 22 21 25 25 C 1.53000 * 109.47564 * 248.70453 * 17 16 13 26 26 C 1.52997 * 117.49787 * 134.21471 * 25 17 16 27 27 C 1.52999 * 60.00179 * 252.51322 * 26 25 17 28 28 H 1.09003 * 109.47302 * 299.99587 * 1 2 3 29 29 H 1.09000 * 109.47594 * 59.99888 * 1 2 3 30 30 H 1.09007 * 109.47448 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47302 * 240.00413 * 2 1 3 32 32 H 1.08994 * 109.47219 * 120.00714 * 2 1 3 33 33 H 1.09000 * 109.47058 * 35.34721 * 4 3 2 34 34 H 1.08999 * 109.47145 * 155.34616 * 4 3 2 35 35 H 0.97000 * 119.99811 * 179.97438 * 8 7 5 36 36 H 0.97006 * 120.00119 * 120.00048 * 16 13 3 37 37 H 1.08003 * 120.41666 * 0.04962 * 20 19 17 38 38 H 1.08004 * 119.61389 * 179.97438 * 21 20 19 39 39 H 1.07999 * 119.61965 * 180.26768 * 23 22 21 40 40 H 1.08008 * 120.41876 * 179.71787 * 24 23 22 41 41 H 1.08999 * 115.54845 * 279.93700 * 25 17 16 42 42 H 1.08994 * 117.49836 * 0.02562 * 26 25 17 43 43 H 1.09000 * 117.49161 * 145.02394 * 26 25 17 44 44 H 1.08998 * 117.50138 * 252.51110 * 27 26 25 45 45 H 1.09001 * 117.51621 * 107.48300 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 -1.2638 5 6 3.4911 1.7823 -1.8865 6 1 4.1334 1.0431 -1.4310 7 6 3.8907 2.4272 -3.0378 8 7 3.1623 3.4052 -3.5302 9 14 5.4665 1.9117 -3.8982 10 1 5.1474 0.9405 -4.9755 11 1 6.1225 3.1065 -4.4874 12 1 6.3824 1.2780 -2.9159 13 16 2.4122 2.1200 1.4288 14 8 1.7725 1.3746 2.4557 15 8 2.2016 3.5115 1.2323 16 7 4.0410 1.9204 1.6512 17 6 4.6082 0.5727 1.7408 18 1 3.8432 -0.1611 1.4872 19 6 5.7619 0.4484 0.7792 20 6 5.9523 -0.7126 0.0454 21 6 7.0219 -0.7904 -0.8264 22 7 7.8579 0.2205 -0.9603 23 6 7.7048 1.3414 -0.2827 24 6 6.6585 1.4919 0.6076 25 6 5.1033 0.3214 3.1665 26 6 4.7383 -1.0149 3.8159 27 6 4.0552 0.2730 4.2801 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.3581 1.8144 -1.9430 34 1 2.0983 3.1805 -1.0746 35 1 3.4436 3.8592 -4.3400 36 1 4.6195 2.6958 1.7221 37 1 5.2732 -1.5454 0.1536 38 1 7.1773 -1.6915 -1.4013 39 1 8.4075 2.1496 -0.4220 40 1 6.5410 2.4107 1.1631 41 1 6.0756 0.7504 3.4089 42 1 4.1457 -1.7152 3.2273 43 1 5.4707 -1.4656 4.4856 44 1 4.3381 0.6695 5.2551 45 1 3.0129 0.4205 3.9970 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000908389371.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:44 Heat of formation + Delta-G solvation = -17.271030 kcal Electronic energy + Delta-G solvation = -29669.368059 eV Core-core repulsion = 25814.462217 eV Total energy + Delta-G solvation = -3854.905843 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.09744 -37.96469 -36.63527 -36.08648 -35.27722 -34.45797 -32.71279 -31.72564 -30.89339 -29.98179 -26.70874 -26.52493 -23.35650 -23.12737 -22.45258 -22.18221 -21.74342 -20.50967 -19.00437 -17.40842 -16.99596 -16.76207 -16.33597 -16.10900 -15.72560 -15.49598 -15.24085 -14.71651 -14.40076 -14.11344 -13.80521 -13.48800 -13.40958 -13.37458 -12.91932 -12.62695 -12.21604 -12.07711 -11.97325 -11.76656 -11.69364 -11.52216 -11.42112 -11.32004 -11.15311 -11.04540 -10.87787 -10.52064 -10.47929 -10.34272 -10.22699 -10.05653 -9.81997 -9.48871 -9.27464 -9.07049 -8.84908 -8.47612 -8.09814 -6.09853 -4.15716 1.20201 1.43303 1.52900 3.27933 3.34929 3.37599 3.46037 3.81888 4.08250 4.15219 4.40410 4.46833 4.71716 4.82951 4.86388 4.91755 5.03059 5.15093 5.18406 5.24677 5.33118 5.35876 5.41350 5.48167 5.65500 5.69030 5.74569 5.83530 5.90741 5.96214 6.01434 6.04796 6.09466 6.22096 6.26079 6.38302 6.57281 6.59978 6.62458 6.95342 7.15187 7.35409 7.44371 7.62515 7.87029 8.15572 8.25007 8.89451 9.51093 10.97687 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009265 B = 0.007425 C = 0.004966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3021.309356 B = 3770.253300 C = 5636.723280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.127 3.873 3 N -0.990 5.990 4 C 0.246 3.754 5 C -0.535 4.535 6 H 0.065 0.935 7 C 0.067 3.933 8 N -0.890 5.890 9 Si 0.881 3.119 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.254 1.254 13 S 2.785 3.215 14 O -0.996 6.996 15 O -0.979 6.979 16 N -1.113 6.113 17 C 0.236 3.764 18 H 0.094 0.906 19 C -0.030 4.030 20 C -0.157 4.157 21 C 0.100 3.900 22 N -0.484 5.484 23 C 0.101 3.899 24 C -0.150 4.150 25 C -0.165 4.165 26 C -0.173 4.173 27 C -0.179 4.179 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.033 0.967 34 H 0.052 0.948 35 H 0.263 0.737 36 H 0.413 0.587 37 H 0.131 0.869 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.129 0.871 41 H 0.107 0.893 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.040 -8.982 11.496 15.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.001 3.999 3 N -0.832 5.832 4 C 0.124 3.876 5 C -0.574 4.574 6 H 0.083 0.917 7 C -0.136 4.136 8 N -0.528 5.528 9 Si 0.708 3.292 10 H -0.211 1.211 11 H -0.216 1.216 12 H -0.178 1.178 13 S 2.793 3.207 14 O -0.979 6.979 15 O -0.963 6.963 16 N -0.870 5.870 17 C 0.128 3.872 18 H 0.111 0.889 19 C -0.040 4.040 20 C -0.178 4.178 21 C -0.057 4.057 22 N -0.193 5.193 23 C -0.056 4.056 24 C -0.170 4.170 25 C -0.186 4.186 26 C -0.211 4.211 27 C -0.216 4.216 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.051 0.949 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.246 0.754 37 H 0.149 0.851 38 H 0.167 0.833 39 H 0.167 0.833 40 H 0.147 0.853 41 H 0.125 0.875 42 H 0.113 0.887 43 H 0.111 0.889 44 H 0.109 0.891 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.988 -8.596 11.334 14.774 hybrid contribution 0.698 0.116 -0.540 0.890 sum 4.686 -8.480 10.794 14.505 Atomic orbital electron populations 1.22194 0.96796 1.01432 1.02417 1.21033 0.93891 0.83065 1.01937 1.57693 1.78455 1.22782 1.24232 1.19201 0.97196 0.92361 0.78828 1.21527 1.03190 1.23017 1.09659 0.91707 1.24920 0.97032 0.94419 0.97278 1.69955 1.38977 1.21900 1.22002 0.86731 0.83854 0.78232 0.80411 1.21138 1.21611 1.17811 1.01744 0.72750 0.73154 0.73030 1.93509 1.74113 1.73813 1.56513 1.93598 1.84398 1.32048 1.86296 1.56076 1.28873 1.12172 1.89849 1.18946 0.93182 0.84227 0.90881 0.88861 1.20234 0.94876 0.93700 0.95183 1.21866 0.99615 0.98427 0.97869 1.22573 0.90816 0.96963 0.95349 1.67588 1.28902 1.00751 1.22098 1.22583 0.96226 0.94963 0.91797 1.21776 0.95661 0.99225 1.00363 1.22602 1.00446 1.02326 0.93191 1.22951 1.03655 0.90812 1.03685 1.23264 0.99987 1.00454 0.97909 0.92704 0.92020 0.92299 0.90203 0.92005 0.94872 0.92973 0.92756 0.75351 0.85129 0.83304 0.83333 0.85271 0.87519 0.88665 0.88882 0.89071 0.86042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.52 10.24 37.16 0.38 -2.14 16 2 C 0.13 2.05 5.83 -4.05 -0.02 2.03 16 3 N -0.99 -19.22 2.83 -115.67 -0.33 -19.55 16 4 C 0.25 5.90 5.46 -5.20 -0.03 5.87 16 5 C -0.53 -13.46 9.38 -34.44 -0.32 -13.78 16 6 H 0.06 1.56 7.42 -52.49 -0.39 1.17 16 7 C 0.07 1.79 5.45 -17.82 -0.10 1.69 16 8 N -0.89 -25.47 13.29 55.43 0.74 -24.73 16 9 Si 0.88 20.84 29.54 -169.99 -5.02 15.82 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.25 -5.81 6.76 56.52 0.38 -5.43 16 13 S 2.79 52.20 5.90 -107.50 -0.63 51.56 16 14 O -1.00 -18.29 14.68 -57.17 -0.84 -19.13 16 15 O -0.98 -22.27 16.79 -57.17 -0.96 -23.23 16 16 N -1.11 -17.27 5.24 -5.88 -0.03 -17.30 16 17 C 0.24 3.20 2.73 -69.08 -0.19 3.01 16 18 H 0.09 1.25 6.15 -51.93 -0.32 0.93 16 19 C -0.03 -0.43 4.58 -104.31 -0.48 -0.91 16 20 C -0.16 -2.19 9.78 -39.44 -0.39 -2.58 16 21 C 0.10 1.48 11.18 -17.55 -0.20 1.29 16 22 N -0.48 -8.05 10.01 -13.25 -0.13 -8.19 16 23 C 0.10 1.55 11.18 -17.55 -0.20 1.35 16 24 C -0.15 -2.18 9.38 -39.44 -0.37 -2.55 16 25 C -0.17 -1.91 5.29 -90.62 -0.48 -2.39 16 26 C -0.17 -1.76 10.18 -26.73 -0.27 -2.04 16 27 C -0.18 -2.10 10.21 -26.73 -0.27 -2.38 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 1.28 8.11 -51.93 -0.42 0.86 16 32 H 0.06 0.87 6.34 -51.93 -0.33 0.54 16 33 H 0.03 0.83 8.11 -51.93 -0.42 0.41 16 34 H 0.05 1.42 6.96 -51.93 -0.36 1.05 16 35 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 36 H 0.41 5.90 7.58 -34.47 -0.26 5.63 16 37 H 0.13 1.48 8.06 -52.48 -0.42 1.06 16 38 H 0.15 1.81 8.06 -52.48 -0.42 1.39 16 39 H 0.15 1.93 8.06 -52.49 -0.42 1.51 16 40 H 0.13 1.61 6.95 -52.48 -0.36 1.25 16 41 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.09 0.92 8.08 -51.93 -0.42 0.50 16 43 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.12 1.70 5.88 -51.93 -0.31 1.40 16 LS Contribution 383.03 15.07 5.77 5.77 Total: -1.00 -32.60 383.03 -10.92 -43.53 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -6.55 Total: 8.96 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -2.93 Total: -13.52 kcal Atomic # 7 Polarization: -70.01 SS G_CDS: 0.25 Total: -69.76 kcal Atomic # 8 Polarization: -40.56 SS G_CDS: -1.80 Total: -42.36 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 52.20 SS G_CDS: -0.63 Total: 51.56 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.60 -10.92 -43.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908389371.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.254 kcal (2) G-P(sol) polarization free energy of solvation -32.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds