Wall clock time and date at job start Sat Apr 11 2020 05:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46496 * 109.47213 * 2 1 4 4 C 1.46496 * 120.00396 * 275.00260 * 3 2 1 5 5 C 1.50699 * 109.47346 * 275.34734 * 4 3 2 6 6 H 1.08002 * 119.99840 * 4.78306 * 5 4 3 7 7 C 1.37876 * 120.00308 * 184.77717 * 5 4 3 8 8 N 1.31515 * 119.99796 * 5.70837 * 7 5 4 9 9 Si 1.86796 * 120.00126 * 185.70979 * 7 5 4 10 10 H 1.48507 * 109.47201 * 94.97977 * 9 7 5 11 11 H 1.48498 * 109.47248 * 214.98189 * 9 7 5 12 12 H 1.48503 * 109.47154 * 334.98320 * 9 7 5 13 13 S 1.65604 * 119.99564 * 95.00211 * 3 2 1 14 14 O 1.42101 * 106.40174 * 341.04655 * 13 3 2 15 15 O 1.42098 * 106.40077 * 208.13187 * 13 3 2 16 16 N 1.65596 * 107.21837 * 94.59108 * 13 3 2 17 17 C 1.46497 * 119.99988 * 299.99633 * 16 13 3 18 18 H 1.08999 * 109.46786 * 8.70935 * 17 16 13 19 19 C 1.50704 * 109.46850 * 128.70655 * 17 16 13 20 20 C 1.38656 * 120.78932 * 219.99837 * 19 17 16 21 21 C 1.38204 * 119.16103 * 180.02562 * 20 19 17 22 22 N 1.31863 * 120.76554 * 0.25704 * 21 20 19 23 23 C 1.31871 * 121.72535 * 359.47356 * 22 21 20 24 24 C 1.38200 * 120.76362 * 0.52566 * 23 22 21 25 25 C 1.53000 * 109.47564 * 248.70453 * 17 16 13 26 26 C 1.52997 * 117.49787 * 134.21471 * 25 17 16 27 27 C 1.52999 * 60.00179 * 252.51322 * 26 25 17 28 28 H 1.09003 * 109.47302 * 299.99587 * 1 2 3 29 29 H 1.09000 * 109.47594 * 59.99888 * 1 2 3 30 30 H 1.09007 * 109.47448 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47302 * 240.00413 * 2 1 3 32 32 H 1.08994 * 109.47219 * 120.00714 * 2 1 3 33 33 H 1.09000 * 109.47058 * 35.34721 * 4 3 2 34 34 H 1.08999 * 109.47145 * 155.34616 * 4 3 2 35 35 H 0.97000 * 119.99811 * 179.97438 * 8 7 5 36 36 H 0.97006 * 120.00119 * 120.00048 * 16 13 3 37 37 H 1.08003 * 120.41666 * 0.04962 * 20 19 17 38 38 H 1.08004 * 119.61389 * 179.97438 * 21 20 19 39 39 H 1.07999 * 119.61965 * 180.26768 * 23 22 21 40 40 H 1.08008 * 120.41876 * 179.71787 * 24 23 22 41 41 H 1.08999 * 115.54845 * 279.93700 * 25 17 16 42 42 H 1.08994 * 117.49836 * 0.02562 * 26 25 17 43 43 H 1.09000 * 117.49161 * 145.02394 * 26 25 17 44 44 H 1.08998 * 117.50138 * 252.51110 * 27 26 25 45 45 H 1.09001 * 117.51621 * 107.48300 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 -1.2638 5 6 3.4911 1.7823 -1.8865 6 1 4.1334 1.0431 -1.4310 7 6 3.8907 2.4272 -3.0378 8 7 3.1623 3.4052 -3.5302 9 14 5.4665 1.9117 -3.8982 10 1 5.1474 0.9405 -4.9755 11 1 6.1225 3.1065 -4.4874 12 1 6.3824 1.2780 -2.9159 13 16 2.4122 2.1200 1.4288 14 8 1.7725 1.3746 2.4557 15 8 2.2016 3.5115 1.2323 16 7 4.0410 1.9204 1.6512 17 6 4.6082 0.5727 1.7408 18 1 3.8432 -0.1611 1.4872 19 6 5.7619 0.4484 0.7792 20 6 5.9523 -0.7126 0.0454 21 6 7.0219 -0.7904 -0.8264 22 7 7.8579 0.2205 -0.9603 23 6 7.7048 1.3414 -0.2827 24 6 6.6585 1.4919 0.6076 25 6 5.1033 0.3214 3.1665 26 6 4.7383 -1.0149 3.8159 27 6 4.0552 0.2730 4.2801 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.3581 1.8144 -1.9430 34 1 2.0983 3.1805 -1.0746 35 1 3.4436 3.8592 -4.3400 36 1 4.6195 2.6958 1.7221 37 1 5.2732 -1.5454 0.1536 38 1 7.1773 -1.6915 -1.4013 39 1 8.4075 2.1496 -0.4220 40 1 6.5410 2.4107 1.1631 41 1 6.0756 0.7504 3.4089 42 1 4.1457 -1.7152 3.2273 43 1 5.4707 -1.4656 4.4856 44 1 4.3381 0.6695 5.2551 45 1 3.0129 0.4205 3.9970 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000908389371.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:43 Heat of formation + Delta-G solvation = -38.797777 kcal Electronic energy + Delta-G solvation = -29670.301529 eV Core-core repulsion = 25814.462217 eV Total energy + Delta-G solvation = -3855.839312 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.18016 -39.00320 -38.16782 -37.66676 -36.86918 -35.52900 -34.66974 -32.89641 -31.97724 -31.50689 -28.48584 -27.68352 -24.94896 -24.36394 -23.46061 -23.25571 -23.04405 -21.51996 -20.43480 -18.77796 -18.57582 -18.29758 -17.97696 -17.26646 -17.02830 -16.74055 -16.47742 -16.16664 -15.57718 -15.51058 -15.08784 -14.77599 -14.66774 -14.58580 -14.42895 -13.82591 -13.72109 -13.59523 -13.36675 -13.31345 -13.12800 -13.04775 -12.77964 -12.72203 -12.61731 -12.40013 -12.24685 -12.11114 -12.06628 -11.72370 -11.61392 -11.26004 -11.15629 -10.71385 -10.55324 -10.42242 -10.19217 -9.94097 -9.75350 -8.15556 -6.25958 -0.28395 0.34346 0.40734 1.38694 1.45356 1.56563 1.96201 2.43102 2.58157 2.96795 3.01127 3.17850 3.41355 3.53177 3.69398 3.77497 3.93111 3.97198 4.13880 4.16259 4.23435 4.31914 4.35953 4.44143 4.45940 4.55417 4.72046 4.77297 4.83942 4.91753 4.97641 5.01452 5.10279 5.13423 5.15873 5.29325 5.29722 5.42111 5.44274 5.49068 5.56552 5.78124 5.88631 5.91808 6.12306 6.13723 6.87390 7.14492 7.44189 8.92305 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009265 B = 0.007425 C = 0.004966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3021.309356 B = 3770.253300 C = 5636.723280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.118 3.882 3 N -0.993 5.993 4 C 0.262 3.738 5 C -0.521 4.521 6 H 0.078 0.922 7 C 0.017 3.983 8 N -0.931 5.931 9 Si 0.940 3.060 10 H -0.286 1.286 11 H -0.301 1.301 12 H -0.241 1.241 13 S 2.798 3.202 14 O -0.991 6.991 15 O -1.024 7.024 16 N -1.108 6.108 17 C 0.235 3.765 18 H 0.098 0.902 19 C -0.038 4.038 20 C -0.159 4.159 21 C 0.086 3.914 22 N -0.511 5.511 23 C 0.083 3.917 24 C -0.160 4.160 25 C -0.168 4.168 26 C -0.156 4.156 27 C -0.191 4.191 28 H 0.046 0.954 29 H 0.045 0.955 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.018 0.982 34 H 0.015 0.985 35 H 0.261 0.739 36 H 0.418 0.582 37 H 0.158 0.842 38 H 0.172 0.828 39 H 0.163 0.837 40 H 0.142 0.858 41 H 0.116 0.884 42 H 0.103 0.897 43 H 0.112 0.888 44 H 0.103 0.897 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.016 -11.501 12.706 17.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.007 4.007 3 N -0.835 5.835 4 C 0.138 3.862 5 C -0.561 4.561 6 H 0.096 0.904 7 C -0.182 4.182 8 N -0.571 5.571 9 Si 0.767 3.233 10 H -0.212 1.212 11 H -0.228 1.228 12 H -0.164 1.164 13 S 2.807 3.193 14 O -0.974 6.974 15 O -1.008 7.008 16 N -0.867 5.867 17 C 0.127 3.873 18 H 0.116 0.884 19 C -0.048 4.048 20 C -0.179 4.179 21 C -0.071 4.071 22 N -0.221 5.221 23 C -0.073 4.073 24 C -0.180 4.180 25 C -0.189 4.189 26 C -0.193 4.193 27 C -0.228 4.228 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.036 0.964 34 H 0.033 0.967 35 H 0.070 0.930 36 H 0.253 0.747 37 H 0.175 0.825 38 H 0.189 0.811 39 H 0.180 0.820 40 H 0.160 0.840 41 H 0.134 0.866 42 H 0.121 0.879 43 H 0.131 0.869 44 H 0.121 0.879 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.959 -11.147 12.570 17.517 hybrid contribution 0.368 0.843 -0.827 1.237 sum 5.327 -10.304 11.743 16.506 Atomic orbital electron populations 1.22194 0.95981 1.03294 1.01279 1.21339 0.94725 0.81286 1.03396 1.57580 1.79222 1.24026 1.22626 1.18700 0.96400 0.90765 0.80321 1.21812 1.03313 1.22052 1.08887 0.90365 1.25639 0.99670 0.94590 0.98333 1.70082 1.40878 1.23527 1.22652 0.85793 0.80842 0.77247 0.79435 1.21240 1.22814 1.16364 1.01192 0.73408 0.71971 0.72768 1.93520 1.74621 1.73349 1.55904 1.93539 1.85503 1.34974 1.86821 1.55823 1.27776 1.13613 1.89470 1.19126 0.93034 0.82873 0.92230 0.88439 1.20392 0.94978 0.94026 0.95426 1.22186 0.99704 0.99021 0.97036 1.23040 0.90815 0.97401 0.95807 1.67599 1.29913 1.01534 1.23024 1.22911 0.96978 0.95312 0.92116 1.22001 0.95597 0.99979 1.00422 1.22536 1.00640 1.03997 0.91692 1.23090 1.03216 0.90069 1.02972 1.23230 0.98743 1.02322 0.98502 0.93465 0.93546 0.88952 0.89857 0.89309 0.96361 0.96696 0.93037 0.74653 0.82481 0.81123 0.81999 0.83993 0.86644 0.87897 0.86923 0.87899 0.88315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.73 10.24 71.98 0.74 -3.99 16 2 C 0.12 3.55 5.83 86.38 0.50 4.05 16 3 N -0.99 -37.98 2.83 -519.88 -1.47 -39.45 16 4 C 0.26 12.73 5.46 85.63 0.47 13.20 16 5 C -0.52 -25.99 9.38 25.60 0.24 -25.75 16 6 H 0.08 3.63 7.42 -2.91 -0.02 3.61 16 7 C 0.02 0.90 5.45 84.65 0.46 1.36 16 8 N -0.93 -54.32 13.29 21.45 0.28 -54.03 16 9 Si 0.94 42.90 29.54 68.60 2.03 44.92 16 10 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 11 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 12 H -0.24 -10.34 6.76 99.48 0.67 -9.66 16 13 S 2.80 103.52 5.90 -56.49 -0.33 103.19 16 14 O -0.99 -35.11 14.68 -128.00 -1.88 -36.99 16 15 O -1.02 -47.57 16.79 -128.00 -2.15 -49.72 16 16 N -1.11 -32.93 5.24 -172.52 -0.90 -33.83 16 17 C 0.23 5.78 2.73 44.25 0.12 5.91 16 18 H 0.10 2.31 6.15 -2.39 -0.01 2.30 16 19 C -0.04 -1.01 4.58 -19.67 -0.09 -1.10 16 20 C -0.16 -3.94 9.78 22.36 0.22 -3.72 16 21 C 0.09 2.32 11.18 84.68 0.95 3.27 16 22 N -0.51 -15.98 10.01 -195.85 -1.96 -17.95 16 23 C 0.08 2.41 11.18 84.68 0.95 3.36 16 24 C -0.16 -4.36 9.38 22.36 0.21 -4.15 16 25 C -0.17 -3.41 5.29 -10.79 -0.06 -3.46 16 26 C -0.16 -2.59 10.18 30.59 0.31 -2.28 16 27 C -0.19 -3.99 10.21 30.59 0.31 -3.68 16 28 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 31 H 0.08 2.47 8.11 -2.39 -0.02 2.45 16 32 H 0.09 2.20 6.34 -2.39 -0.02 2.19 16 33 H 0.02 0.94 8.11 -2.39 -0.02 0.92 16 34 H 0.01 0.84 6.96 -2.39 -0.02 0.83 16 35 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 36 H 0.42 11.59 7.58 -96.74 -0.73 10.85 16 37 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 38 H 0.17 3.64 8.06 -2.91 -0.02 3.62 16 39 H 0.16 4.02 8.06 -2.91 -0.02 3.99 16 40 H 0.14 3.34 6.95 -2.91 -0.02 3.32 16 41 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.10 1.57 8.08 -2.39 -0.02 1.55 16 43 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.10 2.57 5.88 -2.39 -0.01 2.56 16 Total: -1.00 -70.45 383.03 -0.82 -71.27 By element: Atomic # 1 Polarization: 29.35 SS G_CDS: 0.24 Total: 29.58 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: 5.33 Total: -16.99 kcal Atomic # 7 Polarization: -141.21 SS G_CDS: -4.05 Total: -145.26 kcal Atomic # 8 Polarization: -82.68 SS G_CDS: -4.03 Total: -86.71 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Atomic # 16 Polarization: 103.52 SS G_CDS: -0.33 Total: 103.19 kcal Total: -70.45 -0.82 -71.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908389371.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.474 kcal (2) G-P(sol) polarization free energy of solvation -70.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds