Wall clock time and date at job start Sat Apr 11 2020 05:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40079 * 126.03454 * 2 1 4 4 C 1.30844 * 108.20315 * 180.02562 * 3 2 1 5 5 C 1.50697 * 125.89535 * 179.97438 * 4 3 2 6 6 N 1.46500 * 109.47252 * 275.02139 * 5 4 3 7 7 S 1.65598 * 120.00011 * 165.00416 * 6 5 4 8 8 O 1.42104 * 104.27721 * 308.92614 * 7 6 5 9 9 O 1.42102 * 104.27547 * 181.07217 * 7 6 5 10 10 C 1.81402 * 104.44974 * 65.00162 * 7 6 5 11 11 C 1.53001 * 109.46891 * 186.02560 * 10 7 6 12 12 C 1.50694 * 115.55090 * 299.71367 * 11 10 7 13 13 H 1.08005 * 120.00400 * 95.16752 * 12 11 10 14 14 C 1.37881 * 120.00174 * 275.16424 * 12 11 10 15 15 N 1.31519 * 119.99560 * 7.14695 * 14 12 11 16 16 Si 1.86794 * 120.00267 * 187.14069 * 14 12 11 17 17 H 1.48506 * 109.47024 * 270.00356 * 16 14 12 18 18 H 1.48501 * 109.47294 * 29.99973 * 16 14 12 19 19 H 1.48499 * 109.47472 * 150.00325 * 16 14 12 20 20 C 1.53003 * 117.49782 * 85.38231 * 11 10 7 21 21 C 1.53000 * 117.49822 * 154.04317 * 11 10 7 22 22 C 1.39866 * 108.19906 * 0.24264 * 4 3 2 23 23 C 1.34950 * 126.03648 * 180.02562 * 2 1 3 24 24 C 1.50699 * 126.12472 * 359.97438 * 23 2 1 25 25 C 1.53010 * 117.49350 * 213.74632 * 24 23 2 26 26 C 1.53000 * 117.49615 * 145.08878 * 24 23 2 27 27 H 1.09002 * 109.47461 * 90.02539 * 1 2 3 28 28 H 1.09005 * 109.47074 * 210.02151 * 1 2 3 29 29 H 1.09000 * 109.47350 * 330.02353 * 1 2 3 30 30 H 1.09005 * 109.46725 * 155.02675 * 5 4 3 31 31 H 1.08996 * 109.47376 * 35.02511 * 5 4 3 32 32 H 0.97001 * 120.00090 * 345.00219 * 6 5 4 33 33 H 1.08999 * 109.47001 * 66.02450 * 10 7 6 34 34 H 1.08995 * 109.46816 * 306.02411 * 10 7 6 35 35 H 0.96992 * 120.00150 * 355.42589 * 15 14 12 36 36 H 1.08998 * 117.50208 * 214.99989 * 20 11 10 37 37 H 1.08999 * 117.49652 * 0.02653 * 20 11 10 38 38 H 1.09002 * 117.49607 * 359.97438 * 21 11 10 39 39 H 1.09001 * 117.50205 * 144.97246 * 21 11 10 40 40 H 1.08009 * 126.03541 * 179.72746 * 22 4 3 41 41 H 1.08999 * 115.55550 * 359.41523 * 24 23 2 42 42 H 1.08995 * 117.49816 * 359.97438 * 25 24 23 43 43 H 1.08998 * 117.49715 * 145.02115 * 25 24 23 44 44 H 1.09004 * 117.49954 * 214.97362 * 26 24 23 45 45 H 1.09006 * 117.50224 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7321 -0.0006 5 6 4.7496 1.6237 -0.0013 6 7 5.0711 2.0099 -1.3774 7 16 6.1112 3.2663 -1.6633 8 8 5.6004 4.3309 -0.8727 9 8 6.1610 3.3646 -3.0800 10 6 7.7032 2.6940 -1.0085 11 6 8.7224 3.8330 -1.0785 12 6 9.0053 4.3682 -2.4585 13 1 8.4743 5.2362 -2.8205 14 6 9.9422 3.7498 -3.2591 15 7 10.4863 2.6147 -2.8780 16 14 10.4383 4.5239 -4.8851 17 1 9.5494 4.0223 -5.9638 18 1 10.3145 6.0006 -4.7885 19 1 11.8452 4.1644 -5.1958 20 6 8.7523 4.8268 0.0845 21 6 9.8813 3.8062 -0.0799 22 6 3.5436 -0.6665 -0.0066 23 6 2.2589 -1.0913 -0.0005 24 6 1.7973 -2.5258 -0.0006 25 6 2.6555 -3.5441 0.7529 26 6 2.6400 -3.5390 -0.7778 27 1 -0.3634 -0.0005 -1.0277 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3634 0.8902 0.5135 30 1 5.5939 1.0876 0.4323 31 1 4.5450 2.5172 0.5884 32 1 4.6747 1.5295 -2.1212 33 1 8.0584 1.8515 -1.6019 34 1 7.5783 2.3814 0.0281 35 1 10.2789 2.2464 -2.0050 36 1 8.9765 5.8677 -0.1486 37 1 8.0460 4.6689 0.8996 38 1 9.9173 2.9774 0.6272 39 1 10.8485 4.1753 -0.4212 40 1 4.4211 -1.2963 -0.0126 41 1 0.7172 -2.6722 0.0098 42 1 3.5541 -3.1764 1.2482 43 1 2.1400 -4.3605 1.2587 44 1 2.1144 -4.3522 -1.2784 45 1 3.5282 -3.1680 -1.2894 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921910612.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:05 Heat of formation + Delta-G solvation = 51.506301 kcal Electronic energy + Delta-G solvation = -27259.727083 eV Core-core repulsion = 23407.803649 eV Total energy + Delta-G solvation = -3851.923434 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.59426 -37.51641 -37.04352 -36.28815 -35.52126 -35.05860 -32.99415 -31.95104 -30.06637 -28.27971 -27.91852 -25.13381 -24.93195 -23.78318 -22.80832 -21.37513 -20.40309 -19.91191 -19.54581 -18.71325 -17.50461 -16.89395 -16.77006 -16.05150 -15.61170 -15.41222 -15.30644 -14.82813 -14.33311 -14.12189 -13.97525 -13.70709 -13.67643 -13.30493 -13.06289 -12.94206 -12.67100 -12.50924 -12.02196 -11.95958 -11.83387 -11.45520 -11.25853 -11.22160 -11.16588 -11.12339 -11.08805 -10.74339 -10.64056 -10.58926 -10.31758 -10.07390 -9.70952 -9.32928 -9.22050 -8.66161 -8.63646 -8.44635 -8.29609 -6.43298 -4.21689 1.00006 1.55427 2.22614 2.45273 3.48730 3.50337 3.52052 3.58854 3.67002 3.98988 4.17813 4.40675 4.48789 4.51235 4.53521 4.55659 4.70471 4.85031 4.90890 5.02766 5.09008 5.16487 5.21552 5.22251 5.23732 5.35191 5.50191 5.54414 5.57351 5.67817 5.69302 5.78224 5.99449 6.02520 6.11464 6.21020 6.37907 6.42533 6.56974 6.75938 6.78403 7.04783 7.20389 7.24791 7.54097 8.06575 8.37120 8.80023 9.57359 10.96924 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017061 B = 0.002770 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.774674 B =10105.217281 C =10432.056335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.371 5.371 3 N -0.273 5.273 4 C 0.072 3.928 5 C 0.199 3.801 6 N -1.127 6.127 7 S 2.618 3.382 8 O -0.969 6.969 9 O -0.944 6.944 10 C -0.568 4.568 11 C 0.022 3.978 12 C -0.593 4.593 13 H 0.062 0.938 14 C 0.040 3.960 15 N -0.898 5.898 16 Si 1.066 2.934 17 H -0.282 1.282 18 H -0.285 1.285 19 H -0.284 1.284 20 C -0.190 4.190 21 C -0.165 4.165 22 C -0.258 4.258 23 C 0.115 3.885 24 C -0.108 4.108 25 C -0.160 4.160 26 C -0.159 4.159 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.414 0.586 33 H 0.127 0.873 34 H 0.100 0.900 35 H 0.275 0.725 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.149 0.851 41 H 0.114 0.886 42 H 0.103 0.897 43 H 0.101 0.899 44 H 0.102 0.898 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.464 -13.875 8.691 23.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.153 5.153 3 N -0.096 5.096 4 C -0.096 4.096 5 C 0.071 3.929 6 N -0.884 5.884 7 S 2.714 3.286 8 O -0.959 6.959 9 O -0.934 6.934 10 C -0.700 4.700 11 C 0.019 3.981 12 C -0.630 4.630 13 H 0.080 0.920 14 C -0.167 4.167 15 N -0.531 5.531 16 Si 0.894 3.106 17 H -0.208 1.208 18 H -0.211 1.211 19 H -0.209 1.209 20 C -0.228 4.228 21 C -0.204 4.204 22 C -0.288 4.288 23 C -0.012 4.012 24 C -0.128 4.128 25 C -0.197 4.197 26 C -0.197 4.197 27 H 0.093 0.907 28 H 0.104 0.896 29 H 0.109 0.891 30 H 0.101 0.899 31 H 0.111 0.889 32 H 0.247 0.753 33 H 0.146 0.854 34 H 0.119 0.881 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.107 0.893 40 H 0.167 0.833 41 H 0.132 0.868 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.120 0.880 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -17.669 -12.164 7.087 22.592 hybrid contribution -0.399 -1.341 1.458 2.021 sum -18.068 -13.505 8.546 24.122 Atomic orbital electron populations 1.21848 0.74413 1.04397 1.03445 1.48419 1.06473 1.03190 1.57247 1.77466 1.01321 1.06861 1.23905 1.22113 0.93116 0.93697 1.00643 1.19484 0.91775 0.97546 0.84108 1.56021 1.64169 1.56052 1.12190 1.04840 0.75710 0.73251 0.74818 1.93502 1.77883 1.52037 1.72466 1.93564 1.86525 1.84634 1.28643 1.30118 1.19736 1.10531 1.09662 1.18543 0.94740 0.92314 0.92454 1.21423 1.26714 1.16989 0.97869 0.91961 1.25809 0.93012 0.94293 1.03597 1.70735 1.44201 1.16359 1.21835 0.83593 0.76509 0.75516 0.75023 1.20808 1.21113 1.20950 1.23052 1.02180 0.96593 1.00933 1.22793 0.94661 1.00341 1.02573 1.21061 0.96336 0.94210 1.17166 1.20124 0.90801 0.88651 1.01614 1.20419 0.98188 0.85611 1.08572 1.23100 1.01823 0.99932 0.94865 1.23115 1.02029 0.99977 0.94553 0.90675 0.89640 0.89089 0.89936 0.88911 0.75339 0.85433 0.88117 0.91363 0.89287 0.90564 0.91174 0.89320 0.83318 0.86796 0.87836 0.88024 0.87984 0.87745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.69 11.22 59.85 0.67 1.36 16 2 N -0.37 -4.23 4.01 -63.88 -0.26 -4.48 16 3 N -0.27 -4.01 12.58 33.67 0.42 -3.59 16 4 C 0.07 0.99 6.61 -82.41 -0.54 0.44 16 5 C 0.20 2.77 6.69 -5.19 -0.03 2.74 16 6 N -1.13 -18.19 5.88 -11.66 -0.07 -18.26 16 7 S 2.62 54.73 5.10 -107.50 -0.55 54.18 16 8 O -0.97 -22.16 17.50 -57.54 -1.01 -23.16 16 9 O -0.94 -23.44 17.57 -57.54 -1.01 -24.45 16 10 C -0.57 -11.75 5.87 37.16 0.22 -11.53 16 11 C 0.02 0.53 0.95 -155.66 -0.15 0.38 16 12 C -0.59 -16.59 7.88 -34.44 -0.27 -16.86 16 13 H 0.06 1.80 7.82 -52.48 -0.41 1.39 16 14 C 0.04 1.13 5.39 -17.82 -0.10 1.04 16 15 N -0.90 -25.87 13.57 55.43 0.75 -25.12 16 16 Si 1.07 25.65 29.91 -169.99 -5.08 20.57 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 C -0.19 -4.16 9.95 -26.69 -0.27 -4.42 16 21 C -0.16 -3.66 8.74 -26.69 -0.23 -3.90 16 22 C -0.26 -2.99 9.74 -40.02 -0.39 -3.38 16 23 C 0.11 1.20 6.62 -82.26 -0.54 0.65 16 24 C -0.11 -0.75 5.97 -91.77 -0.55 -1.30 16 25 C -0.16 -0.92 10.05 -26.68 -0.27 -1.19 16 26 C -0.16 -0.97 10.05 -26.69 -0.27 -1.24 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.09 0.35 7.22 -51.93 -0.37 -0.02 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.09 1.33 7.69 -51.93 -0.40 0.94 16 32 H 0.41 6.24 8.61 -34.47 -0.30 5.95 16 33 H 0.13 2.69 7.79 -51.92 -0.40 2.29 16 34 H 0.10 1.68 8.11 -51.93 -0.42 1.25 16 35 H 0.28 7.69 6.17 -40.82 -0.25 7.44 16 36 H 0.09 1.95 8.14 -51.93 -0.42 1.52 16 37 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 38 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 39 H 0.09 2.09 8.14 -51.93 -0.42 1.67 16 40 H 0.15 1.45 8.06 -52.48 -0.42 1.02 16 41 H 0.11 0.59 7.24 -51.93 -0.38 0.22 16 42 H 0.10 0.65 7.94 -51.93 -0.41 0.23 16 43 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.10 0.73 7.95 -51.93 -0.41 0.31 16 LS Contribution 391.05 15.07 5.89 5.89 Total: -1.00 -36.97 391.05 -10.41 -47.38 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -6.78 Total: 8.26 kcal Atomic # 6 Polarization: -34.49 SS G_CDS: -2.72 Total: -37.21 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: 0.85 Total: -51.45 kcal Atomic # 8 Polarization: -45.60 SS G_CDS: -2.02 Total: -47.62 kcal Atomic # 14 Polarization: 25.65 SS G_CDS: -5.08 Total: 20.57 kcal Atomic # 16 Polarization: 54.73 SS G_CDS: -0.55 Total: 54.18 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.97 -10.41 -47.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921910612.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.884 kcal (2) G-P(sol) polarization free energy of solvation -36.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds