Wall clock time and date at job start Sat Apr 11 2020 05:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46505 * 109.46682 * 2 1 4 4 C 1.35873 * 126.07565 * 124.99930 * 3 2 1 5 5 C 1.35587 * 107.58133 * 179.97438 * 4 3 2 6 6 O 1.36222 * 126.05691 * 180.02562 * 5 4 3 7 7 C 1.42906 * 117.00285 * 180.02562 * 6 5 4 8 8 H 1.09000 * 110.05544 * 28.57894 * 7 6 5 9 9 C 1.54370 * 110.04473 * 267.10964 * 7 6 5 10 10 C 1.54895 * 104.19595 * 217.09234 * 9 7 6 11 11 C 1.54881 * 102.74950 * 37.96505 * 10 9 7 12 12 C 1.53870 * 110.03203 * 149.99871 * 7 6 5 13 13 H 1.09005 * 110.03314 * 238.61308 * 12 7 6 14 14 N 1.46499 * 110.03557 * 359.97438 * 12 7 6 15 15 C 1.34778 * 120.00278 * 204.30778 * 14 12 7 16 16 O 1.21278 * 119.99748 * 0.02562 * 15 14 12 17 17 C 1.50697 * 120.00209 * 180.02562 * 15 14 12 18 18 S 1.80999 * 109.47181 * 180.02562 * 17 15 14 19 19 C 1.76199 * 99.99825 * 179.97438 * 18 17 15 20 20 H 1.08002 * 120.00405 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99855 * 179.72221 * 19 18 17 22 22 N 1.31630 * 119.99849 * 180.27695 * 21 19 18 23 23 Si 1.86800 * 120.00065 * 0.28024 * 21 19 18 24 24 H 1.48498 * 109.47118 * 89.99557 * 23 21 19 25 25 H 1.48499 * 109.47134 * 210.00077 * 23 21 19 26 26 H 1.48507 * 109.46904 * 329.99899 * 23 21 19 27 27 C 1.40117 * 107.89388 * 0.26401 * 5 4 3 28 28 N 1.30868 * 108.35735 * 359.55484 * 27 5 4 29 29 H 1.08999 * 109.46869 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47549 * 300.00003 * 1 2 3 31 31 H 1.09007 * 109.47319 * 60.00424 * 1 2 3 32 32 H 1.09000 * 109.47428 * 240.00349 * 2 1 3 33 33 H 1.08996 * 109.47007 * 119.99919 * 2 1 3 34 34 H 1.07995 * 126.21124 * 359.97438 * 4 3 2 35 35 H 1.08996 * 110.46515 * 98.41809 * 9 7 6 36 36 H 1.09009 * 110.62177 * 335.83467 * 9 7 6 37 37 H 1.08997 * 110.75108 * 279.64662 * 10 9 7 38 38 H 1.08995 * 110.91254 * 156.35739 * 10 9 7 39 39 H 1.09000 * 110.48886 * 203.38067 * 11 10 9 40 40 H 1.09004 * 110.59939 * 80.79295 * 11 10 9 41 41 H 0.97000 * 119.99972 * 24.31134 * 14 12 7 42 42 H 1.08999 * 109.47278 * 59.99800 * 17 15 14 43 43 H 1.09002 * 109.46837 * 300.00183 * 17 15 14 44 44 H 0.97005 * 119.99878 * 180.02562 * 22 21 19 45 45 H 1.07997 * 125.82172 * 179.73564 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.8788 1.9257 0.8996 5 6 3.0751 3.2201 0.5469 6 8 3.8727 4.1152 1.1937 7 6 3.9375 5.4362 0.6523 8 1 3.0063 5.6759 0.1391 9 6 5.1260 5.5491 -0.3264 10 6 5.6780 6.9770 -0.0903 11 6 5.5324 7.1508 1.4418 12 6 4.1972 6.4543 1.7764 13 1 3.3915 7.1878 1.8093 14 7 4.2996 5.7644 3.0647 15 6 4.0371 6.4287 4.2077 16 8 3.7157 7.5975 4.1696 17 6 4.1429 5.7192 5.5329 18 16 3.7316 6.8700 6.8680 19 6 3.9301 5.8077 8.2596 20 1 4.2257 4.7789 8.1159 21 6 3.7126 6.2947 9.5411 22 7 3.8661 5.5025 10.5811 23 14 3.2020 8.0743 9.7898 24 1 1.7203 8.1715 9.7694 25 1 3.7118 8.5573 11.0982 26 1 3.7679 8.9086 8.6994 27 6 2.3081 3.4757 -0.5975 28 7 1.6813 2.3754 -0.9277 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.3253 1.4194 1.7425 35 1 4.7842 5.4374 -1.3553 36 1 5.8863 4.8031 -0.0948 37 1 5.0781 7.7157 -0.6218 38 1 6.7241 7.0440 -0.3891 39 1 5.4872 8.2080 1.7032 40 1 6.3572 6.6648 1.9630 41 1 4.5563 4.8295 3.0952 42 1 5.1606 5.3532 5.6689 43 1 3.4491 4.8788 5.5515 44 1 3.7138 5.8428 11.4766 45 1 2.2470 4.4190 -1.1198 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926707095.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:09 Heat of formation + Delta-G solvation = -21.837491 kcal Electronic energy + Delta-G solvation = -26656.645824 eV Core-core repulsion = 22801.541965 eV Total energy + Delta-G solvation = -3855.103859 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.28305 -41.09022 -39.61980 -37.33437 -35.02552 -34.72537 -34.63837 -31.37097 -31.21764 -29.82641 -28.66071 -28.05922 -27.70284 -24.84313 -22.58544 -22.39852 -21.89830 -21.53092 -20.61059 -19.86627 -19.04453 -18.02846 -17.50897 -17.09204 -16.80001 -16.61002 -16.46834 -16.14110 -15.90601 -15.66268 -15.31110 -15.16821 -14.89499 -14.75522 -14.57394 -14.36425 -13.79118 -13.54229 -13.34627 -13.23415 -13.12963 -13.00092 -12.94679 -12.74718 -12.47460 -12.45023 -12.14701 -12.00261 -11.85631 -11.63211 -11.55925 -11.45193 -11.17006 -10.97710 -10.53468 -10.42173 -10.06348 -8.99074 -8.82534 -8.51427 -6.21948 0.84721 0.98768 1.31541 1.44125 1.48318 1.56494 1.58343 1.79763 2.07351 2.25288 2.52415 2.76188 2.86779 3.41621 3.55039 3.71693 3.82444 3.90895 4.01540 4.09190 4.14170 4.22890 4.27571 4.38612 4.42172 4.44600 4.47046 4.47764 4.52882 4.68861 4.73122 4.81521 4.92801 4.99025 5.01705 5.14120 5.20907 5.21741 5.31099 5.41118 5.51840 5.71078 6.04177 6.11627 6.48109 6.54299 6.64753 6.93742 7.23233 8.61120 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011009 B = 0.002706 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.661666 B =10344.232485 C =12390.866295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.127 3.873 3 N -0.367 5.367 4 C 0.018 3.982 5 C -0.042 4.042 6 O -0.303 6.303 7 C 0.088 3.912 8 H 0.092 0.908 9 C -0.134 4.134 10 C -0.112 4.112 11 C -0.135 4.135 12 C 0.142 3.858 13 H 0.083 0.917 14 N -0.698 5.698 15 C 0.536 3.464 16 O -0.562 6.562 17 C -0.110 4.110 18 S -0.172 6.172 19 C -0.528 4.528 20 H 0.061 0.939 21 C 0.045 3.955 22 N -0.918 5.918 23 Si 0.915 3.085 24 H -0.262 1.262 25 H -0.258 1.258 26 H -0.236 1.236 27 C -0.011 4.011 28 N -0.300 5.300 29 H 0.099 0.901 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.096 0.904 33 H 0.123 0.877 34 H 0.202 0.798 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.417 0.583 42 H 0.112 0.888 43 H 0.109 0.891 44 H 0.277 0.723 45 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.029 -9.151 -28.864 30.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.008 3.992 3 N -0.156 5.156 4 C -0.126 4.126 5 C -0.096 4.096 6 O -0.216 6.216 7 C 0.030 3.970 8 H 0.109 0.891 9 C -0.172 4.172 10 C -0.149 4.149 11 C -0.174 4.174 12 C 0.037 3.963 13 H 0.102 0.898 14 N -0.352 5.352 15 C 0.322 3.678 16 O -0.441 6.441 17 C -0.261 4.261 18 S 0.054 5.946 19 C -0.676 4.676 20 H 0.080 0.920 21 C -0.160 4.160 22 N -0.556 5.556 23 Si 0.736 3.264 24 H -0.187 1.187 25 H -0.183 1.183 26 H -0.160 1.160 27 C -0.196 4.196 28 N -0.124 5.124 29 H 0.118 0.882 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.114 0.886 33 H 0.141 0.859 34 H 0.219 0.781 35 H 0.109 0.891 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.255 0.745 42 H 0.130 0.870 43 H 0.127 0.873 44 H 0.086 0.914 45 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -1.216 -7.989 -29.378 30.469 hybrid contribution 0.666 -0.775 1.379 1.716 sum -0.550 -8.764 -27.999 29.344 Atomic orbital electron populations 1.22041 0.93873 1.04016 1.02084 1.22032 0.95937 0.75470 1.05757 1.48809 1.35558 1.10881 1.20346 1.22048 0.98650 0.93258 0.98656 1.18788 1.01906 0.91359 0.97593 1.85846 1.63210 1.20173 1.52382 1.23340 1.00551 0.79669 0.93425 0.89053 1.22854 0.96931 0.98136 0.99244 1.22370 1.02694 0.96259 0.93622 1.22782 0.96039 1.00549 0.97985 1.21896 0.99375 0.93667 0.81371 0.89845 1.45634 1.69749 1.15646 1.04189 1.19935 0.75928 0.86489 0.85489 1.90671 1.48287 1.17681 1.87433 1.23249 1.06824 1.02272 0.93777 1.84663 1.91295 1.19377 0.99249 1.22466 1.53556 0.98944 0.92644 0.92041 1.25571 0.93702 1.02180 0.94564 1.70018 1.48368 1.37889 0.99300 0.85864 0.80081 0.80389 0.80022 1.18718 1.18273 1.15996 1.24293 0.98474 0.98980 0.97902 1.77169 1.23412 0.97178 1.14673 0.88225 0.93304 0.92861 0.88567 0.85861 0.78115 0.89091 0.90392 0.89771 0.89514 0.91779 0.91184 0.74493 0.87005 0.87291 0.91356 0.78354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 10.10 71.98 0.73 -0.92 16 2 C 0.13 1.20 7.24 86.38 0.63 1.83 16 3 N -0.37 -6.21 3.71 -347.07 -1.29 -7.50 16 4 C 0.02 0.31 11.51 83.45 0.96 1.27 16 5 C -0.04 -0.81 6.96 22.11 0.15 -0.66 16 6 O -0.30 -5.80 7.99 -96.09 -0.77 -6.57 16 7 C 0.09 1.43 3.16 31.35 0.10 1.53 16 8 H 0.09 1.30 6.32 -2.39 -0.02 1.28 16 9 C -0.13 -1.63 6.56 31.71 0.21 -1.43 16 10 C -0.11 -1.37 6.91 31.88 0.22 -1.15 16 11 C -0.13 -2.60 6.53 31.67 0.21 -2.40 16 12 C 0.14 3.12 3.23 45.71 0.15 3.27 16 13 H 0.08 2.12 7.59 -2.38 -0.02 2.10 16 14 N -0.70 -18.30 4.83 -439.11 -2.12 -20.42 16 15 C 0.54 19.16 7.84 87.66 0.69 19.85 16 16 O -0.56 -24.29 15.53 -3.02 -0.05 -24.34 16 17 C -0.11 -4.32 6.16 71.23 0.44 -3.88 16 18 S -0.17 -8.86 18.54 -56.49 -1.05 -9.90 16 19 C -0.53 -31.15 10.04 67.96 0.68 -30.46 16 20 H 0.06 3.82 8.03 -2.91 -0.02 3.80 16 21 C 0.05 2.67 5.50 84.86 0.47 3.14 16 22 N -0.92 -56.32 13.97 21.65 0.30 -56.01 16 23 Si 0.91 45.40 27.74 68.60 1.90 47.30 16 24 H -0.26 -12.72 7.11 99.48 0.71 -12.01 16 25 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 26 H -0.24 -11.69 6.73 99.48 0.67 -11.02 16 27 C -0.01 -0.21 10.91 85.29 0.93 0.72 16 28 N -0.30 -6.26 12.42 -56.84 -0.71 -6.96 16 29 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.12 0.53 8.07 -2.39 -0.02 0.52 16 34 H 0.20 2.34 8.06 -2.91 -0.02 2.32 16 35 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.08 1.06 8.08 -2.38 -0.02 1.04 16 37 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.06 1.41 8.14 -2.39 -0.02 1.40 16 40 H 0.07 1.44 8.05 -2.38 -0.02 1.42 16 41 H 0.42 9.45 7.19 -92.71 -0.67 8.79 16 42 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 43 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 44 H 0.28 15.69 8.31 -92.70 -0.77 14.92 16 45 H 0.20 2.64 6.97 -2.91 -0.02 2.62 16 Total: -1.00 -77.89 386.40 3.08 -74.82 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: 0.29 Total: 18.87 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: 6.55 Total: -9.28 kcal Atomic # 7 Polarization: -87.08 SS G_CDS: -3.81 Total: -90.90 kcal Atomic # 8 Polarization: -30.10 SS G_CDS: -0.82 Total: -30.91 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.90 Total: 47.30 kcal Atomic # 16 Polarization: -8.86 SS G_CDS: -1.05 Total: -9.90 kcal Total: -77.89 3.08 -74.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926707095.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.978 kcal (2) G-P(sol) polarization free energy of solvation -77.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds