Wall clock time and date at job start Sat Apr 11 2020 05:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.47060 * 2 1 4 4 C 1.34773 * 120.00339 * 262.10269 * 3 2 1 5 5 O 1.21688 * 120.00162 * 185.05087 * 4 3 2 6 6 C 1.46681 * 119.99946 * 5.05007 * 4 3 2 7 7 C 1.35663 * 126.13023 * 19.22110 * 6 4 3 8 8 N 1.30946 * 114.19122 * 179.78124 * 7 6 4 9 9 C 1.29421 * 117.36203 * 0.52877 * 8 7 6 10 10 C 1.50698 * 124.80384 * 179.68254 * 9 8 7 11 11 H 1.09001 * 109.47498 * 195.02300 * 10 9 8 12 12 C 1.53007 * 109.47068 * 75.02661 * 10 9 8 13 13 O 1.42895 * 109.47471 * 315.02362 * 10 9 8 14 14 C 1.42903 * 114.00330 * 209.99717 * 13 10 9 15 15 S 1.70948 * 110.39348 * 359.70634 * 9 8 7 16 16 C 1.46506 * 119.99621 * 82.10831 * 3 2 1 17 17 C 1.53500 * 114.20436 * 119.99675 * 16 3 2 18 18 N 1.47067 * 87.98320 * 87.52133 * 17 16 3 19 19 C 1.36938 * 136.05236 * 207.08885 * 18 17 16 20 20 H 1.07999 * 120.00470 * 358.99954 * 19 18 17 21 21 C 1.38814 * 119.99591 * 179.00905 * 19 18 17 22 22 N 1.31626 * 119.99474 * 180.41638 * 21 19 18 23 23 Si 1.86788 * 120.00291 * 0.41225 * 21 19 18 24 24 H 1.48500 * 109.47320 * 173.93134 * 23 21 19 25 25 H 1.48508 * 109.47441 * 293.92974 * 23 21 19 26 26 H 1.48498 * 109.47440 * 53.92869 * 23 21 19 27 27 C 1.47065 * 87.88760 * 27.33709 * 18 17 16 28 28 H 1.08998 * 109.47512 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46874 * 299.99955 * 1 2 3 30 30 H 1.09003 * 109.47130 * 59.99470 * 1 2 3 31 31 H 1.09003 * 109.46566 * 240.00405 * 2 1 3 32 32 H 1.09003 * 109.47130 * 120.00530 * 2 1 3 33 33 H 1.08002 * 122.90200 * 359.96560 * 7 6 4 34 34 H 1.09000 * 109.47409 * 59.99647 * 12 10 9 35 35 H 1.08996 * 109.47047 * 180.02562 * 12 10 9 36 36 H 1.09002 * 109.46960 * 299.99686 * 12 10 9 37 37 H 1.09004 * 109.46816 * 179.97438 * 14 13 10 38 38 H 1.09001 * 109.47281 * 299.99916 * 14 13 10 39 39 H 1.09003 * 109.46854 * 60.00205 * 14 13 10 40 40 H 1.09004 * 113.28283 * 346.93039 * 16 3 2 41 41 H 1.08993 * 113.46815 * 332.73518 * 17 16 3 42 42 H 1.09006 * 113.45985 * 202.29490 * 17 16 3 43 43 H 0.97003 * 120.00114 * 5.04635 * 22 21 19 44 44 H 1.09001 * 113.46336 * 87.44041 * 27 18 17 45 45 H 1.09000 * 113.46843 * 217.87755 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3941 1.9632 -1.1561 5 8 2.8855 3.0764 -1.1453 6 6 2.2109 1.2547 -2.4273 7 6 1.3748 0.2092 -2.6470 8 7 1.3935 -0.2438 -3.8755 9 6 2.1937 0.3361 -4.7112 10 6 2.3544 -0.0518 -6.1585 11 1 3.2604 0.4035 -6.5583 12 6 1.1433 0.4377 -6.9552 13 8 2.4500 -1.4738 -6.2628 14 6 3.2387 -1.9239 -7.3663 15 16 3.0430 1.6039 -3.9408 16 6 2.0982 2.1299 1.2568 17 6 3.5122 2.6066 1.6165 18 7 3.2509 3.8155 0.8208 19 6 4.0065 4.7155 0.1178 20 1 5.0808 4.6097 0.0850 21 6 3.3916 5.7641 -0.5526 22 7 4.1172 6.6244 -1.2350 23 14 1.5346 5.9539 -0.4863 24 1 1.1425 7.2216 -1.1529 25 1 0.8947 4.8095 -1.1836 26 1 1.0900 5.9816 0.9303 27 6 1.8217 3.6359 1.1175 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 1.8932 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8900 33 1 0.7459 -0.2111 -1.8762 34 1 1.0703 1.5223 -6.8757 35 1 1.2593 0.1567 -8.0020 36 1 0.2372 -0.0177 -6.5555 37 1 3.2623 -3.0137 -7.3753 38 1 2.8017 -1.5619 -8.2969 39 1 4.2540 -1.5397 -7.2679 40 1 1.5656 1.6507 2.0783 41 1 4.3006 1.9772 1.2039 42 1 3.6452 2.8072 2.6797 43 1 5.0724 6.4851 -1.3306 44 1 1.5092 4.1078 2.0490 45 1 1.1700 3.8834 0.2796 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950331823.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:23 Heat of formation + Delta-G solvation = 106.777485 kcal Electronic energy + Delta-G solvation = -28663.049361 eV Core-core repulsion = 24813.522665 eV Total energy + Delta-G solvation = -3849.526695 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.58443 -39.57323 -38.21427 -36.73365 -35.50608 -32.57554 -32.06900 -30.24716 -29.67159 -27.51009 -27.03851 -25.87203 -25.28174 -23.43110 -23.02257 -22.80163 -20.94870 -19.89235 -18.48056 -17.82986 -17.26769 -17.01029 -16.21601 -16.01717 -15.57352 -15.28394 -15.23732 -14.81400 -14.39846 -14.13492 -14.04028 -13.55419 -13.45081 -13.26813 -12.95448 -12.88632 -12.79142 -12.49858 -12.38022 -11.94420 -11.71271 -11.60104 -11.33396 -11.27088 -11.11289 -11.06936 -10.85671 -10.40321 -10.20923 -10.15578 -9.69227 -9.26499 -9.18729 -9.08348 -8.80328 -8.75099 -8.36787 -8.03778 -6.65890 -5.98211 -2.82536 0.41579 1.22044 1.79493 2.64244 3.34496 3.52383 3.59334 3.62310 3.69812 3.89104 3.99946 4.53152 4.75785 4.82121 4.87030 4.87577 4.98227 5.01340 5.02469 5.05189 5.10737 5.28137 5.35413 5.36250 5.43316 5.45166 5.50316 5.60206 5.65830 5.71667 5.87398 5.92536 6.04056 6.11439 6.15835 6.27872 6.35187 6.46604 6.59423 6.83328 7.21820 7.33879 7.72964 7.82653 8.49976 8.91226 9.28149 9.85214 10.66861 11.55637 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013966 B = 0.004260 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.396645 B = 6570.762595 C = 7661.640126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.089 3.911 3 N -0.590 5.590 4 C 0.539 3.461 5 O -0.402 6.402 6 C -0.262 4.262 7 C 0.037 3.963 8 N -0.450 5.450 9 C 0.008 3.992 10 C 0.170 3.830 11 H 0.080 0.920 12 C -0.167 4.167 13 O -0.365 6.365 14 C 0.027 3.973 15 S 0.242 5.758 16 C 0.106 3.894 17 C 0.107 3.893 18 N -0.599 5.599 19 C -0.245 4.245 20 H 0.073 0.927 21 C -0.020 4.020 22 N -0.953 5.953 23 Si 1.081 2.919 24 H -0.306 1.306 25 H -0.297 1.297 26 H -0.298 1.298 27 C 0.090 3.910 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.202 0.798 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.043 0.957 39 H 0.043 0.957 40 H 0.095 0.905 41 H 0.041 0.959 42 H 0.043 0.957 43 H 0.254 0.746 44 H 0.048 0.952 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.288 -19.267 -6.535 21.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.035 4.035 3 N -0.326 5.326 4 C 0.322 3.678 5 O -0.269 6.269 6 C -0.387 4.387 7 C -0.120 4.120 8 N -0.165 5.165 9 C -0.267 4.267 10 C 0.108 3.892 11 H 0.098 0.902 12 C -0.226 4.226 13 O -0.283 6.283 14 C -0.070 4.070 15 S 0.500 5.500 16 C 0.001 3.999 17 C -0.022 4.022 18 N -0.327 5.327 19 C -0.371 4.371 20 H 0.091 0.909 21 C -0.216 4.216 22 N -0.598 5.598 23 Si 0.917 3.083 24 H -0.235 1.235 25 H -0.226 1.226 26 H -0.226 1.226 27 C -0.037 4.037 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.218 0.782 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.112 0.888 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.695 -17.270 -7.600 20.021 hybrid contribution 0.744 -1.453 1.023 1.926 sum -5.951 -18.723 -6.578 20.718 Atomic orbital electron populations 1.22404 0.96294 1.02357 1.03187 1.21994 0.94148 0.83526 1.03791 1.47176 1.66585 1.12945 1.05941 1.17274 0.81343 0.87493 0.81731 1.91601 1.35669 1.15208 1.84391 1.26310 1.07195 1.04489 1.00712 1.23320 1.00238 0.94323 0.94102 1.66075 1.19834 1.28766 1.01819 1.27206 0.99554 0.99398 1.00543 1.20411 0.98961 0.82935 0.86871 0.90181 1.22258 0.98569 1.02036 0.99776 1.88077 1.71674 1.19576 1.49022 1.22874 0.94242 1.00818 0.89055 1.84294 1.36925 1.29055 0.99685 1.22706 0.99214 0.93231 0.84796 1.22746 0.94640 0.89594 0.95198 1.45709 1.01295 1.29636 1.56034 1.19808 0.89848 1.03791 1.23682 0.90934 1.25307 1.05847 0.93719 0.96743 1.70929 1.07305 1.37061 1.44520 0.83562 0.76383 0.73543 0.74799 1.23489 1.22629 1.22585 1.23049 0.90394 0.91462 0.98753 0.91267 0.91412 0.91764 0.89158 0.90482 0.78157 0.91026 0.91386 0.90709 0.89290 0.93788 0.93825 0.88767 0.94065 0.93922 0.93640 0.93507 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.82 9.02 37.16 0.34 -1.49 16 2 C 0.09 1.04 5.59 -4.04 -0.02 1.02 16 3 N -0.59 -9.85 2.75 -167.26 -0.46 -10.31 16 4 C 0.54 10.98 7.15 -12.85 -0.09 10.88 16 5 O -0.40 -10.25 8.98 5.20 0.05 -10.20 16 6 C -0.26 -4.61 6.12 -37.10 -0.23 -4.84 16 7 C 0.04 0.55 8.82 -18.85 -0.17 0.39 16 8 N -0.45 -6.95 10.49 -11.50 -0.12 -7.08 16 9 C 0.01 0.11 6.28 -13.29 -0.08 0.03 16 10 C 0.17 1.93 3.23 -27.88 -0.09 1.84 16 11 H 0.08 0.74 7.78 -51.93 -0.40 0.34 16 12 C -0.17 -1.64 9.51 37.16 0.35 -1.28 16 13 O -0.37 -4.34 10.32 -35.23 -0.36 -4.70 16 14 C 0.03 0.21 10.82 101.05 1.09 1.30 16 15 S 0.24 3.94 23.07 -107.50 -2.48 1.46 16 16 C 0.11 1.82 4.90 -67.67 -0.33 1.49 16 17 C 0.11 2.13 8.22 -8.50 -0.07 2.06 16 18 N -0.60 -15.22 2.07 -184.61 -0.38 -15.60 16 19 C -0.25 -7.39 8.99 -15.06 -0.14 -7.52 16 20 H 0.07 2.35 8.05 -52.49 -0.42 1.92 16 21 C -0.02 -0.63 5.10 -17.43 -0.09 -0.71 16 22 N -0.95 -31.80 13.70 55.49 0.76 -31.04 16 23 Si 1.08 29.66 23.99 -169.99 -4.08 25.58 16 24 H -0.31 -8.58 7.11 56.52 0.40 -8.18 16 25 H -0.30 -7.96 6.31 56.52 0.36 -7.60 16 26 H -0.30 -7.59 6.45 56.52 0.36 -7.23 16 27 C 0.09 1.97 4.86 -8.37 -0.04 1.93 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 30 H 0.06 0.73 6.62 -51.93 -0.34 0.38 16 31 H 0.09 1.07 4.68 -51.93 -0.24 0.83 16 32 H 0.08 0.75 8.13 -51.93 -0.42 0.32 16 33 H 0.20 2.54 2.90 -52.49 -0.15 2.38 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.51 7.87 -51.93 -0.41 0.11 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.04 0.27 7.87 -51.93 -0.41 -0.14 16 39 H 0.04 0.30 8.09 -51.93 -0.42 -0.12 16 40 H 0.09 1.23 8.10 -51.93 -0.42 0.81 16 41 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.25 8.41 8.73 -40.82 -0.36 8.05 16 44 H 0.05 0.98 7.93 -51.93 -0.41 0.57 16 45 H 0.06 1.33 3.68 -51.93 -0.19 1.14 16 LS Contribution 361.24 15.07 5.44 5.44 Total: -1.00 -38.23 361.24 -7.64 -45.87 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: -6.44 Total: -4.50 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: 0.43 Total: 5.09 kcal Atomic # 7 Polarization: -63.83 SS G_CDS: -0.20 Total: -64.03 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.32 Total: -14.91 kcal Atomic # 14 Polarization: 29.66 SS G_CDS: -4.08 Total: 25.58 kcal Atomic # 16 Polarization: 3.94 SS G_CDS: -2.48 Total: 1.46 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -38.23 -7.64 -45.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950331823.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.643 kcal (2) G-P(sol) polarization free energy of solvation -38.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds