Wall clock time and date at job start Sat Apr 11 2020 05:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35722 * 117.00233 * 2 1 4 4 C 1.39356 * 120.36098 * 0.02562 * 3 2 1 5 5 N 1.31292 * 120.88201 * 179.69843 * 4 3 2 6 6 C 1.32885 * 121.71708 * 0.56586 * 5 4 3 7 7 C 1.47757 * 119.68720 * 179.70702 * 6 5 4 8 8 O 1.21570 * 119.99649 * 179.73329 * 7 6 5 9 9 N 1.34774 * 120.00070 * 359.72866 * 7 6 5 10 10 C 1.46504 * 119.99981 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47036 * 180.02562 * 10 9 7 12 12 H 1.09002 * 110.78272 * 51.75735 * 11 10 9 13 13 C 1.54327 * 110.71739 * 288.52195 * 11 10 9 14 14 N 1.47014 * 107.27187 * 219.44553 * 13 11 10 15 15 C 1.36941 * 125.65028 * 178.98893 * 14 13 11 16 16 H 1.08001 * 119.99881 * 359.97438 * 15 14 13 17 17 C 1.38810 * 120.00004 * 179.97438 * 15 14 13 18 18 N 1.31624 * 120.00364 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00071 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46912 * 59.99933 * 19 17 15 21 21 H 1.48493 * 109.47199 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46777 * 300.00037 * 19 17 15 23 23 C 1.47419 * 108.70437 * 358.94082 * 14 13 11 24 24 C 1.54912 * 104.83306 * 24.12578 * 23 14 13 25 25 H 1.08995 * 111.03828 * 204.90274 * 24 23 14 26 26 O 1.42903 * 110.99758 * 81.06681 * 24 23 14 27 27 C 1.39721 * 120.62341 * 359.43893 * 6 5 4 28 28 F 1.35105 * 120.46348 * 180.24786 * 27 6 5 29 29 C 1.38686 * 119.07106 * 0.27091 * 27 6 5 30 30 H 1.08996 * 109.46999 * 59.99477 * 1 2 3 31 31 H 1.08996 * 109.47225 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46652 * 299.99927 * 1 2 3 33 33 H 1.08008 * 119.55929 * 359.97438 * 4 3 2 34 34 H 0.97000 * 119.99775 * 0.02562 * 9 7 6 35 35 H 1.08996 * 109.46660 * 60.00162 * 10 9 7 36 36 H 1.08998 * 109.47245 * 300.00289 * 10 9 7 37 37 H 1.08999 * 109.88583 * 338.86569 * 13 11 10 38 38 H 1.09001 * 109.88372 * 100.02571 * 13 11 10 39 39 H 0.96996 * 119.99935 * 179.97438 * 18 17 15 40 40 H 1.09009 * 110.36844 * 265.29198 * 23 14 13 41 41 H 1.09002 * 110.37005 * 142.96697 * 23 14 13 42 42 H 0.96700 * 114.00311 * 67.80834 * 26 24 23 43 43 H 1.08001 * 120.78717 * 179.97438 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2093 0.0000 4 6 1.2937 2.3828 0.0005 5 7 1.8791 3.5580 0.0065 6 6 3.2024 3.6793 0.0010 7 6 3.8140 5.0243 0.0015 8 8 5.0240 5.1418 0.0015 9 7 3.0304 6.1209 0.0020 10 6 3.6368 7.4545 0.0031 11 6 2.5347 8.5158 0.0040 12 1 1.8186 8.3291 0.8043 13 6 1.8233 8.5654 -1.3646 14 7 1.5629 9.9796 -1.6702 15 6 0.9631 10.4533 -2.8065 16 1 0.6370 9.7649 -3.5721 17 6 0.7742 11.8182 -2.9742 18 7 1.1711 12.6572 -2.0409 19 14 -0.0434 12.4645 -4.5246 20 1 -1.4109 11.8966 -4.6365 21 1 -0.1257 13.9457 -4.4602 22 1 0.7572 12.0647 -5.7097 23 6 2.0533 10.8034 -0.5503 24 6 3.1421 9.9378 0.1316 25 1 3.2658 10.2173 1.1778 26 8 4.3834 10.0295 -0.5705 27 6 4.0209 2.5469 0.0004 28 9 5.3660 2.6740 -0.0001 29 6 3.4333 1.2907 -0.0001 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5138 0.8900 33 1 0.2152 2.3248 0.0005 34 1 2.0649 6.0270 0.0023 35 1 4.2551 7.5731 -0.8866 36 1 4.2547 7.5720 0.8933 37 1 2.4650 8.1324 -2.1319 38 1 0.8822 8.0178 -1.3133 39 1 1.0394 13.6110 -2.1584 40 1 1.2437 11.0144 0.1485 41 1 2.4854 11.7321 -0.9232 42 1 4.8009 10.9002 -0.5193 43 1 4.0396 0.3969 -0.0010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958127514.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:39 Heat of formation + Delta-G solvation = -119.396200 kcal Electronic energy + Delta-G solvation = -29070.167089 eV Core-core repulsion = 24644.619591 eV Total energy + Delta-G solvation = -4425.547498 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.18404 -41.96848 -40.78887 -39.81589 -38.95784 -36.32634 -36.14263 -34.05761 -33.49773 -32.08116 -31.10058 -29.42524 -28.50354 -27.30887 -26.03272 -25.04083 -24.01702 -22.41143 -21.75595 -21.17707 -19.70444 -19.36054 -19.04989 -18.86455 -17.97387 -17.43726 -17.37266 -16.93953 -16.77542 -16.64648 -16.28283 -16.14607 -15.81244 -15.63215 -15.55567 -14.92188 -14.69447 -14.47637 -14.37063 -14.21075 -13.93919 -13.86423 -13.65974 -13.16352 -13.02707 -12.93103 -12.62316 -12.51239 -12.36486 -12.04912 -11.87655 -11.82383 -11.70906 -11.37669 -10.87072 -10.78597 -10.75396 -10.64677 -10.21887 -9.70073 -8.84843 -7.77753 -5.20105 -0.67223 -0.21601 1.46365 1.49538 1.52046 1.55645 1.79325 2.00222 2.48931 2.49882 2.87226 2.96447 3.28631 3.32746 3.36125 3.53883 3.61453 3.72978 3.90181 3.96698 3.99198 4.02538 4.39466 4.40722 4.43514 4.44152 4.60565 4.64470 4.69263 4.82628 4.83568 4.91500 5.01242 5.12079 5.27946 5.36172 5.40677 5.51703 5.78364 5.95720 6.23957 6.30076 6.52651 6.97853 7.05701 7.12281 7.78769 8.41868 9.24292 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014956 B = 0.002475 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.710244 B =11312.564826 C =12585.318263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.306 6.306 3 C 0.148 3.852 4 C 0.019 3.981 5 N -0.401 5.401 6 C -0.017 4.017 7 C 0.565 3.435 8 O -0.567 6.567 9 N -0.697 5.697 10 C 0.155 3.845 11 C -0.090 4.090 12 H 0.115 0.885 13 C 0.143 3.857 14 N -0.620 5.620 15 C -0.238 4.238 16 H 0.076 0.924 17 C -0.065 4.065 18 N -0.948 5.948 19 Si 0.979 3.021 20 H -0.277 1.277 21 H -0.291 1.291 22 H -0.282 1.282 23 C 0.127 3.873 24 C 0.093 3.907 25 H 0.092 0.908 26 O -0.570 6.570 27 C 0.140 3.860 28 F -0.115 7.115 29 C -0.158 4.158 30 H 0.077 0.923 31 H 0.128 0.872 32 H 0.079 0.921 33 H 0.210 0.790 34 H 0.418 0.582 35 H 0.053 0.947 36 H 0.075 0.925 37 H 0.011 0.989 38 H 0.031 0.969 39 H 0.248 0.752 40 H 0.003 0.997 41 H 0.080 0.920 42 H 0.388 0.612 43 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.170 -25.801 8.899 27.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.216 6.216 3 C 0.098 3.902 4 C -0.145 4.145 5 N -0.112 5.112 6 C -0.154 4.154 7 C 0.351 3.649 8 O -0.446 6.446 9 N -0.348 5.348 10 C 0.031 3.969 11 C -0.110 4.110 12 H 0.133 0.867 13 C 0.018 3.982 14 N -0.346 5.346 15 C -0.367 4.367 16 H 0.093 0.907 17 C -0.257 4.257 18 N -0.598 5.598 19 Si 0.807 3.193 20 H -0.203 1.203 21 H -0.217 1.217 22 H -0.208 1.208 23 C 0.002 3.998 24 C 0.033 3.967 25 H 0.109 0.891 26 O -0.377 6.377 27 C 0.117 3.883 28 F -0.093 7.093 29 C -0.184 4.184 30 H 0.096 0.904 31 H 0.146 0.854 32 H 0.098 0.902 33 H 0.227 0.773 34 H 0.255 0.745 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.029 0.971 38 H 0.049 0.951 39 H 0.057 0.943 40 H 0.021 0.979 41 H 0.098 0.902 42 H 0.237 0.763 43 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -1.867 -25.552 8.673 27.048 hybrid contribution -0.121 0.691 -0.830 1.087 sum -1.988 -24.860 7.844 26.144 Atomic orbital electron populations 1.23689 0.74550 1.06979 1.03629 1.86097 1.24823 1.24340 1.86373 1.20029 0.91728 0.86829 0.91646 1.23690 1.02752 0.85461 1.02565 1.67468 1.08294 1.28465 1.07010 1.20910 0.90413 0.92916 1.11209 1.17903 0.85979 0.84236 0.76754 1.90831 1.14833 1.87036 1.51879 1.45799 1.11214 1.05068 1.72713 1.21005 0.94673 0.79171 1.02052 1.22446 0.96742 0.93441 0.98324 0.86695 1.21423 0.96378 0.86149 0.94257 1.44643 1.69761 1.01541 1.18675 1.19383 1.30361 0.91445 0.95548 0.90658 1.25565 1.02705 0.96018 1.01454 1.69981 1.53428 1.01644 1.34711 0.85145 0.78401 0.76729 0.79007 1.20304 1.21730 1.20790 1.22454 0.93419 0.95827 0.88094 1.23119 0.84197 0.94482 0.94917 0.89084 1.86386 1.35756 1.38174 1.77393 1.18431 0.78077 0.93665 0.98110 1.91606 1.28491 1.96589 1.92645 1.20999 0.93793 0.97158 1.06493 0.90449 0.85373 0.90206 0.77337 0.74503 0.92873 0.90706 0.97085 0.95097 0.94269 0.97917 0.90175 0.76257 0.79902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.01 9.82 113.37 1.11 1.12 16 2 O -0.31 -2.89 10.50 -90.45 -0.95 -3.84 16 3 C 0.15 1.95 6.72 22.73 0.15 2.10 16 4 C 0.02 0.26 10.21 85.04 0.87 1.13 16 5 N -0.40 -8.41 9.52 -184.39 -1.76 -10.17 16 6 C -0.02 -0.45 6.75 41.86 0.28 -0.17 16 7 C 0.57 18.29 7.80 86.76 0.68 18.97 16 8 O -0.57 -22.31 15.30 -3.94 -0.06 -22.37 16 9 N -0.70 -20.65 5.46 -466.05 -2.54 -23.19 16 10 C 0.15 5.05 4.50 86.38 0.39 5.44 16 11 C -0.09 -3.05 2.89 -9.61 -0.03 -3.07 16 12 H 0.12 3.27 8.14 -2.39 -0.02 3.25 16 13 C 0.14 6.04 6.75 86.73 0.59 6.63 16 14 N -0.62 -32.24 3.39 -691.99 -2.35 -34.59 16 15 C -0.24 -13.59 10.27 84.03 0.86 -12.72 16 16 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 17 C -0.07 -3.70 5.49 84.86 0.47 -3.23 16 18 N -0.95 -55.77 10.09 21.65 0.22 -55.55 16 19 Si 0.98 45.94 29.55 68.60 2.03 47.96 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 21 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 22 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 23 C 0.13 6.08 5.62 86.86 0.49 6.57 16 24 C 0.09 3.39 4.17 31.98 0.13 3.53 16 25 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 26 O -0.57 -21.23 12.33 -148.98 -1.84 -23.07 16 27 C 0.14 3.35 7.31 22.74 0.17 3.51 16 28 F -0.12 -3.29 15.54 44.97 0.70 -2.59 16 29 C -0.16 -2.57 10.10 22.57 0.23 -2.34 16 30 H 0.08 -0.01 7.67 -2.39 -0.02 -0.03 16 31 H 0.13 -0.25 8.14 -2.39 -0.02 -0.27 16 32 H 0.08 -0.06 7.67 -2.39 -0.02 -0.08 16 33 H 0.21 1.16 6.31 -2.91 -0.02 1.14 16 34 H 0.42 10.85 7.79 -92.71 -0.72 10.12 16 35 H 0.05 2.07 7.52 -2.39 -0.02 2.05 16 36 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.01 0.51 7.68 -2.39 -0.02 0.49 16 38 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 40 H 0.00 0.15 8.14 -2.38 -0.02 0.13 16 41 H 0.08 4.35 5.88 -2.39 -0.01 4.34 16 42 H 0.39 11.82 9.12 -74.06 -0.68 11.15 16 43 H 0.18 2.09 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -78.26 364.09 -0.48 -78.74 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: -0.32 Total: 21.21 kcal Atomic # 6 Polarization: 21.08 SS G_CDS: 6.38 Total: 27.46 kcal Atomic # 7 Polarization: -117.07 SS G_CDS: -6.43 Total: -123.50 kcal Atomic # 8 Polarization: -46.43 SS G_CDS: -2.85 Total: -49.28 kcal Atomic # 9 Polarization: -3.29 SS G_CDS: 0.70 Total: -2.59 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.96 kcal Total: -78.26 -0.48 -78.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958127514.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.657 kcal (2) G-P(sol) polarization free energy of solvation -78.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds