Wall clock time and date at job start Sat Apr 11 2020 05:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35962 * 117.00225 * 2 1 4 4 C 1.37561 * 120.82715 * 180.29365 * 3 2 1 5 5 C 1.38037 * 114.25122 * 180.21707 * 4 3 2 6 6 C 1.47114 * 127.76307 * 179.80732 * 5 4 3 7 7 O 1.21630 * 119.99920 * 7.38216 * 6 5 4 8 8 N 1.34779 * 120.00182 * 187.38885 * 6 5 4 9 9 C 1.46498 * 119.99832 * 357.90239 * 8 6 5 10 10 C 1.46499 * 120.00230 * 177.89760 * 8 6 5 11 11 C 1.52993 * 109.47133 * 119.99939 * 10 8 6 12 12 C 1.53002 * 109.47361 * 180.02562 * 11 10 8 13 13 C 1.52996 * 109.46981 * 300.00020 * 12 11 10 14 14 N 1.46501 * 109.47468 * 300.00184 * 13 12 11 15 15 C 1.36945 * 120.00038 * 205.00252 * 14 13 12 16 16 H 1.08003 * 119.99840 * 359.97438 * 15 14 13 17 17 C 1.38811 * 119.99754 * 180.02562 * 15 14 13 18 18 N 1.31621 * 119.99958 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99740 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47060 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47074 * 119.99401 * 19 17 15 22 22 H 1.48500 * 109.46752 * 239.99893 * 19 17 15 23 23 C 1.53009 * 109.47168 * 60.00027 * 13 12 11 24 24 C 1.52994 * 109.46931 * 299.99885 * 23 13 12 25 25 S 1.77231 * 104.47805 * 359.54012 * 5 4 3 26 26 N 1.30357 * 120.82375 * 359.97050 * 3 2 1 27 27 H 1.09002 * 109.46769 * 60.00437 * 1 2 3 28 28 H 1.09003 * 109.47213 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47080 * 299.99767 * 1 2 3 30 30 H 1.08005 * 122.87678 * 0.03786 * 4 3 2 31 31 H 1.08996 * 109.47320 * 276.20652 * 9 8 6 32 32 H 1.09002 * 109.47302 * 36.20721 * 9 8 6 33 33 H 1.09006 * 109.47158 * 156.20655 * 9 8 6 34 34 H 1.09007 * 109.46900 * 359.97438 * 10 8 6 35 35 H 1.09007 * 109.47323 * 60.00142 * 11 10 8 36 36 H 1.09005 * 109.47535 * 300.00233 * 11 10 8 37 37 H 1.08997 * 109.46951 * 59.99754 * 12 11 10 38 38 H 1.09003 * 109.46979 * 180.02562 * 12 11 10 39 39 H 1.09002 * 109.47325 * 179.97438 * 13 12 11 40 40 H 0.97000 * 119.99975 * 24.99337 * 14 13 12 41 41 H 0.97002 * 119.99574 * 180.02562 * 18 17 15 42 42 H 1.08998 * 109.46712 * 59.99643 * 23 13 12 43 43 H 1.08995 * 109.47108 * 179.97438 * 23 13 12 44 44 H 1.08994 * 109.47366 * 179.97438 * 24 23 13 45 45 H 1.09007 * 109.47506 * 299.99966 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4189 1.3032 -0.0061 5 6 3.9006 2.5967 -0.0005 6 6 5.3049 3.0351 -0.0007 7 8 6.1965 2.2198 -0.1415 8 7 5.6036 4.3401 0.1554 9 6 4.5287 5.3278 0.2791 10 6 7.0031 4.7709 0.2014 11 6 7.2717 5.7542 -0.9394 12 6 8.7335 6.2037 -0.8918 13 6 9.0133 6.8879 0.4477 14 7 8.1387 8.0543 0.5924 15 6 8.5125 9.0942 1.4014 16 1 9.4518 9.0542 1.9329 17 6 7.6836 10.1991 1.5388 18 7 6.5387 10.2475 0.8914 19 14 8.1931 11.6172 2.6428 20 1 9.5136 11.3195 3.2534 21 1 8.2887 12.8615 1.8379 22 1 7.1818 11.7977 3.7152 23 6 8.7446 5.9044 1.5887 24 6 7.2829 5.4550 1.5410 25 16 2.4472 3.6109 -0.0011 26 7 1.3522 2.3148 -0.0006 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 4.0643 0.4372 -0.0116 31 1 4.1823 5.6140 -0.7139 32 1 3.7013 4.8958 0.8421 33 1 4.9029 6.2084 0.8013 34 1 7.6540 3.9031 0.0945 35 1 6.6208 6.6220 -0.8321 36 1 7.0728 5.2667 -1.8939 37 1 9.3841 5.3358 -0.9994 38 1 8.9247 6.9046 -1.7044 39 1 10.0547 7.2077 0.4819 40 1 7.2950 8.0901 0.1152 41 1 5.9597 11.0198 0.9872 42 1 9.3953 5.0366 1.4810 43 1 8.9444 6.3917 2.5430 44 1 7.0916 4.7541 2.3535 45 1 6.6322 6.3229 1.6486 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963338096.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:43 Heat of formation + Delta-G solvation = -8.529629 kcal Electronic energy + Delta-G solvation = -27510.562030 eV Core-core repulsion = 23656.035243 eV Total energy + Delta-G solvation = -3854.526787 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.53809 -40.11199 -38.19388 -36.63900 -35.50016 -33.27521 -31.69656 -30.49830 -30.33434 -28.46581 -27.96899 -27.07387 -25.08712 -23.63177 -22.37549 -22.20228 -20.80817 -19.44532 -18.74575 -18.35098 -17.82720 -17.26192 -16.56010 -16.48899 -16.26304 -15.54192 -15.04870 -14.81698 -14.57788 -14.15599 -13.94428 -13.73020 -13.66225 -13.53423 -13.21204 -12.82851 -12.59342 -12.39881 -12.30937 -12.01271 -11.73610 -11.72264 -11.64121 -11.38293 -10.94318 -10.80423 -10.74335 -10.71947 -10.39869 -10.17182 -10.12878 -9.99852 -9.94357 -9.70241 -9.54541 -8.92644 -8.74836 -8.50734 -6.97383 -5.80825 -3.07836 -0.08374 0.91729 1.34768 1.99948 2.52397 2.87987 3.06612 3.40334 3.47219 3.48439 4.15193 4.57029 4.58833 4.83418 4.91670 4.92711 4.98610 5.06385 5.13502 5.22106 5.35105 5.36770 5.42682 5.54700 5.61793 5.63624 5.73130 5.79212 5.88937 5.93708 6.00975 6.04821 6.12031 6.31493 6.42642 6.49333 6.62447 6.67543 6.75249 6.83250 6.93484 7.03311 7.21963 7.69099 7.88507 8.39082 9.50664 10.08473 10.43568 11.42094 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018939 B = 0.002668 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.079108 B =10493.029651 C =11483.620292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.299 6.299 3 C 0.304 3.696 4 C -0.129 4.129 5 C -0.184 4.184 6 C 0.589 3.411 7 O -0.521 6.521 8 N -0.591 5.591 9 C 0.058 3.942 10 C 0.144 3.856 11 C -0.123 4.123 12 C -0.119 4.119 13 C 0.171 3.829 14 N -0.720 5.720 15 C -0.234 4.234 16 H 0.070 0.930 17 C -0.014 4.014 18 N -0.934 5.934 19 Si 0.903 3.097 20 H -0.281 1.281 21 H -0.293 1.293 22 H -0.293 1.293 23 C -0.130 4.130 24 C -0.119 4.119 25 S 0.316 5.684 26 N -0.540 5.540 27 H 0.059 0.941 28 H 0.101 0.899 29 H 0.060 0.940 30 H 0.176 0.824 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.077 0.923 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.049 0.951 40 H 0.383 0.617 41 H 0.254 0.746 42 H 0.046 0.954 43 H 0.065 0.935 44 H 0.050 0.950 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.035 -17.384 -2.975 19.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.205 6.205 3 C 0.090 3.910 4 C -0.167 4.167 5 C -0.315 4.315 6 C 0.375 3.625 7 O -0.399 6.399 8 N -0.322 5.322 9 C -0.088 4.088 10 C 0.043 3.957 11 C -0.162 4.162 12 C -0.158 4.158 13 C 0.061 3.939 14 N -0.363 5.363 15 C -0.365 4.365 16 H 0.088 0.912 17 C -0.210 4.210 18 N -0.583 5.583 19 Si 0.735 3.265 20 H -0.207 1.207 21 H -0.220 1.220 22 H -0.220 1.220 23 C -0.171 4.171 24 C -0.157 4.157 25 S 0.468 5.532 26 N -0.379 5.379 27 H 0.078 0.922 28 H 0.119 0.881 29 H 0.078 0.922 30 H 0.193 0.807 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.128 0.872 34 H 0.117 0.883 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.067 0.933 40 H 0.218 0.782 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.083 0.917 44 H 0.069 0.931 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.884 -16.376 -2.950 19.354 hybrid contribution 0.400 -0.446 0.552 0.814 sum -9.484 -16.822 -2.398 19.460 Atomic orbital electron populations 1.22952 0.76782 1.03460 1.02548 1.86288 1.22940 1.22980 1.88335 1.19847 0.89666 0.85286 0.96179 1.20715 0.92457 0.98497 1.05060 1.26045 0.99420 0.97745 1.08313 1.16720 0.85300 0.82773 0.77727 1.90827 1.46862 1.52381 1.49809 1.47849 1.08541 1.05512 1.70303 1.22190 0.89293 0.94246 1.03108 1.21357 0.79351 0.98319 0.96710 1.21813 0.98581 0.98903 0.96880 1.21748 0.94958 0.99756 0.99303 1.20258 0.94929 0.87663 0.91056 1.42481 1.22120 1.16311 1.55372 1.19303 1.02569 0.95511 1.19105 0.91215 1.24686 0.96994 0.98551 1.00757 1.69646 1.11715 1.30678 1.46277 0.86171 0.77537 0.82780 0.80035 1.20657 1.21999 1.22009 1.22104 0.94376 0.98748 1.01835 1.21756 0.99234 1.00204 0.94505 1.85535 0.88912 1.10177 1.68581 1.76312 1.29392 1.02507 1.29698 0.92183 0.88108 0.92155 0.80676 0.90915 0.91493 0.87249 0.88283 0.90490 0.92491 0.92255 0.91471 0.93256 0.78223 0.93657 0.93513 0.91659 0.93098 0.89930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.43 101.05 1.05 1.34 16 2 O -0.30 -3.16 10.51 -19.62 -0.21 -3.37 16 3 C 0.30 3.54 7.36 -18.42 -0.14 3.41 16 4 C -0.13 -1.50 10.10 -39.90 -0.40 -1.91 16 5 C -0.18 -2.24 6.46 -36.06 -0.23 -2.47 16 6 C 0.59 8.33 7.66 -12.66 -0.10 8.24 16 7 O -0.52 -8.75 16.29 5.25 0.09 -8.67 16 8 N -0.59 -7.91 2.76 -175.32 -0.48 -8.39 16 9 C 0.06 0.67 8.09 59.85 0.48 1.15 16 10 C 0.14 2.09 2.51 -67.93 -0.17 1.92 16 11 C -0.12 -1.81 5.03 -26.73 -0.13 -1.94 16 12 C -0.12 -1.82 5.61 -26.73 -0.15 -1.97 16 13 C 0.17 3.11 3.10 -67.93 -0.21 2.90 16 14 N -0.72 -16.29 4.28 -53.42 -0.23 -16.52 16 15 C -0.23 -6.05 9.93 -15.06 -0.15 -6.20 16 16 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 17 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 18 N -0.93 -26.41 13.06 55.49 0.72 -25.69 16 19 Si 0.90 21.59 29.55 -169.99 -5.02 16.57 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 C -0.13 -2.14 5.61 -26.73 -0.15 -2.29 16 24 C -0.12 -1.86 5.04 -26.73 -0.13 -2.00 16 25 S 0.32 3.42 19.23 -107.50 -2.07 1.36 16 26 N -0.54 -6.48 11.03 29.18 0.32 -6.16 16 27 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 28 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 30 H 0.18 1.85 8.06 -52.48 -0.42 1.43 16 31 H 0.07 0.75 8.00 -51.93 -0.42 0.34 16 32 H 0.07 0.70 4.46 -23.92 -0.11 0.59 16 33 H 0.11 1.41 6.45 -51.93 -0.33 1.07 16 34 H 0.10 1.52 6.90 -51.93 -0.36 1.16 16 35 H 0.08 1.25 6.04 -51.93 -0.31 0.93 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 40 H 0.38 9.06 6.06 -40.82 -0.25 8.81 16 41 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.08 1.47 6.13 -51.93 -0.32 1.15 16 LS Contribution 370.01 15.07 5.58 5.58 Total: -1.00 -30.15 370.01 -8.11 -38.27 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -6.29 Total: 7.34 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -0.53 Total: -0.32 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: 0.33 Total: -56.75 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: -0.12 Total: -12.03 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 3.42 SS G_CDS: -2.07 Total: 1.36 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.15 -8.11 -38.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963338096.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.736 kcal (2) G-P(sol) polarization free energy of solvation -30.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds