Wall clock time and date at job start Sat Apr 11 2020 05:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42908 * 113.99695 * 2 1 4 4 C 1.50704 * 109.46980 * 179.97438 * 3 2 1 5 5 N 1.29030 * 124.91173 * 90.00133 * 4 3 2 6 6 C 1.31780 * 117.11927 * 180.02562 * 5 4 3 7 7 C 1.50699 * 122.74887 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.46907 * 305.01768 * 7 6 5 9 9 O 1.21287 * 119.99826 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00347 * 179.97438 * 8 7 6 11 11 C 1.47427 * 125.64621 * 359.69736 * 10 8 7 12 12 C 1.55126 * 104.72364 * 155.81199 * 11 10 8 13 13 C 1.55162 * 101.48140 * 37.29701 * 12 11 10 14 14 H 1.09002 * 110.72194 * 82.69835 * 13 12 11 15 15 N 1.46500 * 110.87028 * 205.89526 * 13 12 11 16 16 C 1.46507 * 120.00148 * 53.61187 * 15 13 12 17 17 C 1.36935 * 120.00336 * 233.61201 * 15 13 12 18 18 H 1.07996 * 119.99995 * 21.71739 * 17 15 13 19 19 C 1.38817 * 119.99922 * 201.71887 * 17 15 13 20 20 N 1.31611 * 120.00064 * 13.66770 * 19 17 15 21 21 Si 1.86799 * 119.99602 * 193.66592 * 19 17 15 22 22 H 1.48501 * 109.47587 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47049 * 119.99901 * 21 19 17 24 24 H 1.48503 * 109.47292 * 239.99865 * 21 19 17 25 25 C 1.47022 * 125.65192 * 179.97438 * 10 8 7 26 26 C 1.33638 * 114.50059 * 359.97438 * 6 5 4 27 27 S 1.70972 * 124.91643 * 269.99827 * 4 3 2 28 28 H 1.09007 * 109.46553 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47429 * 299.99894 * 1 2 3 30 30 H 1.09003 * 109.47175 * 60.00459 * 1 2 3 31 31 H 1.08997 * 109.46846 * 60.00260 * 3 2 1 32 32 H 1.08993 * 109.46963 * 299.99840 * 3 2 1 33 33 H 1.09000 * 109.47525 * 65.01886 * 7 6 5 34 34 H 1.09000 * 109.47458 * 185.02440 * 7 6 5 35 35 H 1.08994 * 110.36682 * 274.74709 * 11 10 8 36 36 H 1.09004 * 110.36452 * 37.06686 * 11 10 8 37 37 H 1.08997 * 111.19364 * 279.19139 * 12 11 10 38 38 H 1.09005 * 110.93864 * 155.28480 * 12 11 10 39 39 H 1.08995 * 109.47213 * 94.45245 * 16 15 13 40 40 H 1.08999 * 109.47255 * 214.45950 * 16 15 13 41 41 H 1.09003 * 109.46910 * 334.45873 * 16 15 13 42 42 H 0.97002 * 119.99850 * 179.97438 * 20 19 17 43 43 H 1.08999 * 109.88530 * 300.44832 * 25 10 8 44 44 H 1.09002 * 109.88037 * 61.61083 * 25 10 8 45 45 H 1.08007 * 126.03745 * 179.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5125 1.1866 0.0006 5 7 4.2491 1.1281 -1.0571 6 6 5.5505 1.0246 -0.8779 7 6 6.5274 0.9465 -2.0227 8 6 6.1432 -0.1906 -2.9342 9 8 5.1715 -0.8702 -2.6794 10 7 6.8788 -0.4516 -4.0329 11 6 8.0743 0.2957 -4.4640 12 6 8.8727 -0.7075 -5.3372 13 6 7.7291 -1.4553 -6.0724 14 1 7.3937 -0.8886 -6.9410 15 7 8.1541 -2.8008 -6.4664 16 6 8.7096 -3.7159 -5.4662 17 6 8.0322 -3.2033 -7.7696 18 1 7.9661 -2.4680 -8.5579 19 6 7.9936 -4.5563 -8.0775 20 7 7.8031 -5.4430 -7.1237 21 14 8.2119 -5.1184 -9.8454 22 1 8.4086 -3.9349 -10.7206 23 1 9.3982 -6.0068 -9.9395 24 1 7.0019 -5.8605 -10.2820 25 6 6.6187 -1.5251 -5.0032 26 6 5.9330 0.9946 0.4022 27 16 4.4875 1.1097 1.4030 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 6.5083 1.8823 -2.5813 34 1 7.5311 0.7764 -1.6330 35 1 7.7855 1.1673 -5.0513 36 1 8.6646 0.5986 -3.5992 37 1 9.4535 -1.3924 -4.7194 38 1 9.5147 -0.1829 -6.0449 39 1 7.9162 -4.3536 -5.0768 40 1 9.4796 -4.3344 -5.9274 41 1 9.1466 -3.1403 -4.6501 42 1 7.7758 -6.3885 -7.3389 43 1 6.6466 -2.4926 -4.5020 44 1 5.6451 -1.3751 -5.4698 45 1 6.9488 0.9134 0.7601 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972692240.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:45 Heat of formation + Delta-G solvation = 7.234162 kcal Electronic energy + Delta-G solvation = -26847.680909 eV Core-core repulsion = 22993.837691 eV Total energy + Delta-G solvation = -3853.843218 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.39880 -39.29633 -38.03941 -37.19706 -34.73320 -32.79547 -31.60053 -29.88028 -29.34559 -28.22968 -27.36512 -26.25059 -26.01877 -23.77412 -22.68500 -22.32044 -20.03637 -19.37156 -19.04683 -17.73614 -17.03242 -16.91528 -16.75714 -16.16596 -15.97261 -15.73143 -15.04004 -14.80454 -14.57797 -14.32125 -13.82559 -13.59276 -13.34514 -13.23380 -12.94981 -12.72049 -12.48556 -12.37591 -12.13668 -12.11329 -11.77936 -11.70181 -11.53361 -11.44964 -10.91110 -10.78745 -10.53668 -10.42589 -10.24035 -10.06567 -9.86430 -9.79623 -9.73215 -9.60977 -9.44160 -8.92237 -8.56490 -8.19442 -6.81156 -5.74631 -3.21037 0.47011 1.18366 1.53763 2.52280 2.98134 3.35694 3.39065 3.45028 3.46955 3.51798 4.03371 4.47446 4.55922 4.72778 4.81071 4.92819 4.99990 5.03425 5.05430 5.07848 5.15347 5.25827 5.29182 5.36436 5.42182 5.53558 5.54702 5.65329 5.80903 5.91831 5.96180 6.03640 6.37286 6.41096 6.60372 6.73444 6.76100 6.86567 6.90968 7.36015 7.65408 7.73020 7.79959 7.91541 8.35747 8.54638 9.20044 9.82854 10.31402 11.30056 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017073 B = 0.002322 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.668404 B =12055.744139 C =13052.459366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.379 6.379 3 C 0.142 3.858 4 C 0.042 3.958 5 N -0.424 5.424 6 C 0.090 3.910 7 C -0.063 4.063 8 C 0.525 3.475 9 O -0.523 6.523 10 N -0.616 5.616 11 C 0.101 3.899 12 C -0.153 4.153 13 C 0.172 3.828 14 H 0.078 0.922 15 N -0.586 5.586 16 C 0.160 3.840 17 C -0.260 4.260 18 H 0.071 0.929 19 C 0.003 3.997 20 N -0.904 5.904 21 Si 0.907 3.093 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.290 1.290 25 C 0.089 3.911 26 C -0.251 4.251 27 S 0.131 5.869 28 H 0.091 0.909 29 H 0.043 0.957 30 H 0.045 0.955 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.030 0.970 40 H 0.045 0.955 41 H 0.002 0.998 42 H 0.253 0.747 43 H 0.071 0.929 44 H 0.058 0.942 45 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.294 18.575 17.727 26.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.297 6.297 3 C 0.062 3.938 4 C -0.237 4.237 5 N -0.139 5.139 6 C -0.043 4.043 7 C -0.105 4.105 8 C 0.312 3.688 9 O -0.399 6.399 10 N -0.352 5.352 11 C -0.023 4.023 12 C -0.193 4.193 13 C 0.062 3.938 14 H 0.096 0.904 15 N -0.307 5.307 16 C 0.016 3.984 17 C -0.389 4.389 18 H 0.089 0.911 19 C -0.196 4.196 20 N -0.548 5.548 21 Si 0.737 3.263 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.217 1.217 25 C -0.035 4.035 26 C -0.390 4.390 27 S 0.386 5.614 28 H 0.109 0.891 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.048 0.952 40 H 0.064 0.936 41 H 0.020 0.980 42 H 0.063 0.937 43 H 0.089 0.911 44 H 0.076 0.924 45 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -6.248 17.853 18.479 26.443 hybrid contribution 0.533 -0.362 -1.602 1.727 sum -5.715 17.491 16.877 24.968 Atomic orbital electron populations 1.22799 0.80147 1.03389 1.00101 1.88027 1.20142 1.26100 1.95438 1.20741 0.84729 0.86187 1.02110 1.26480 1.00253 1.05825 0.91121 1.65938 1.04357 1.12337 1.31221 1.19605 0.89910 1.01569 0.93236 1.20228 0.97382 0.99619 0.93295 1.19859 0.82936 0.85359 0.80684 1.90764 1.26613 1.50096 1.72403 1.48553 1.28723 1.33554 1.24353 1.22364 0.86268 0.95313 0.98326 1.23370 0.99062 0.97832 0.99048 1.21354 0.90289 0.88213 0.93951 0.90425 1.43946 1.70172 1.09890 1.06654 1.20804 0.97099 0.91151 0.89359 1.19271 1.45739 0.90966 0.82954 0.91082 1.25045 1.00520 0.96488 0.97537 1.70096 1.52853 1.00879 1.30976 0.86158 0.77373 0.78472 0.84344 1.20272 1.21598 1.21716 1.22890 1.00382 0.90039 0.90231 1.26860 1.03481 1.12945 0.95719 1.83772 0.97854 1.67236 1.12536 0.89097 0.93888 0.93596 0.91101 0.90121 0.87351 0.87414 0.91622 0.91430 0.90381 0.90456 0.95192 0.93628 0.97960 0.93679 0.91079 0.92381 0.80266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.38 -4.76 10.69 -35.23 -0.38 -5.14 16 3 C 0.14 1.48 6.51 36.01 0.23 1.72 16 4 C 0.04 0.54 7.02 -13.45 -0.09 0.45 16 5 N -0.42 -6.56 9.68 -8.06 -0.08 -6.64 16 6 C 0.09 1.22 5.64 -84.23 -0.47 0.74 16 7 C -0.06 -0.76 5.20 -29.03 -0.15 -0.91 16 8 C 0.53 9.09 7.82 -10.98 -0.09 9.00 16 9 O -0.52 -11.63 15.77 5.55 0.09 -11.54 16 10 N -0.62 -10.33 3.32 -170.38 -0.57 -10.89 16 11 C 0.10 1.29 6.70 -2.41 -0.02 1.27 16 12 C -0.15 -2.37 6.61 -24.46 -0.16 -2.53 16 13 C 0.17 3.43 3.43 -66.10 -0.23 3.21 16 14 H 0.08 1.52 7.92 -51.93 -0.41 1.11 16 15 N -0.59 -14.43 2.93 -171.38 -0.50 -14.94 16 16 C 0.16 3.93 7.82 59.85 0.47 4.40 16 17 C -0.26 -7.03 9.63 -15.06 -0.14 -7.18 16 18 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 19 C 0.00 0.08 5.08 -17.43 -0.09 -0.01 16 20 N -0.90 -26.49 10.67 55.49 0.59 -25.89 16 21 Si 0.91 21.77 29.57 -169.99 -5.03 16.74 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 C 0.09 1.81 6.51 -3.07 -0.02 1.79 16 26 C -0.25 -2.69 11.07 29.12 0.32 -2.37 16 27 S 0.13 1.33 23.18 -107.50 -2.49 -1.16 16 28 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.11 0.96 7.74 -51.93 -0.40 0.56 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.67 7.48 -51.93 -0.39 0.28 16 37 H 0.08 1.29 6.07 -51.93 -0.32 0.97 16 38 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.03 0.82 7.33 -51.93 -0.38 0.43 16 40 H 0.04 1.20 7.23 -51.93 -0.38 0.82 16 41 H 0.00 0.04 6.04 -51.93 -0.31 -0.27 16 42 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 43 H 0.07 1.67 7.11 -51.93 -0.37 1.30 16 44 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.18 1.34 8.06 -52.48 -0.42 0.92 16 LS Contribution 381.57 15.07 5.75 5.75 Total: -1.00 -36.11 381.57 -8.67 -44.78 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -6.73 Total: -2.01 kcal Atomic # 6 Polarization: 10.27 SS G_CDS: 0.67 Total: 10.94 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: -0.56 Total: -58.36 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.29 Total: -16.68 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -2.49 Total: -1.16 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.11 -8.67 -44.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972692240.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.010 kcal (2) G-P(sol) polarization free energy of solvation -36.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds