Wall clock time and date at job start Sat Apr 11 2020 05:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42896 * 114.00023 * 2 1 4 4 C 1.50708 * 109.47116 * 180.02562 * 3 2 1 5 5 N 1.30950 * 122.90064 * 270.00122 * 4 3 2 6 6 C 1.29426 * 117.36274 * 180.02562 * 5 4 3 7 7 S 1.70954 * 110.38821 * 359.72331 * 6 5 4 8 8 C 1.35659 * 122.90725 * 89.99890 * 4 3 2 9 9 C 1.46684 * 126.12837 * 359.97438 * 8 4 3 10 10 O 1.21682 * 119.99858 * 350.20108 * 9 8 4 11 11 N 1.34776 * 119.99527 * 170.19688 * 9 8 4 12 12 C 1.46928 * 120.62735 * 164.60489 * 11 9 8 13 13 C 1.53192 * 108.78080 * 126.36875 * 12 11 9 14 14 C 1.53042 * 109.31071 * 54.62910 * 13 12 11 15 15 N 1.46503 * 109.44411 * 178.62628 * 14 13 12 16 16 C 1.46498 * 120.00534 * 60.05887 * 15 14 13 17 17 C 1.36936 * 119.99709 * 240.06045 * 15 14 13 18 18 H 1.07998 * 120.00210 * 12.46815 * 17 15 14 19 19 C 1.38817 * 120.00116 * 192.46804 * 17 15 14 20 20 N 1.31617 * 119.99678 * 26.35346 * 19 17 15 21 21 Si 1.86806 * 120.00011 * 206.35930 * 19 17 15 22 22 H 1.48500 * 109.46945 * 59.99739 * 21 19 17 23 23 H 1.48493 * 109.46691 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46593 * 299.99835 * 21 19 17 25 25 C 1.53042 * 109.53814 * 298.63460 * 14 13 12 26 26 C 1.46925 * 120.63278 * 344.57094 * 11 9 8 27 27 H 1.08995 * 109.47415 * 60.00412 * 1 2 3 28 28 H 1.09009 * 109.47296 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47711 * 299.99945 * 1 2 3 30 30 H 1.08998 * 109.47401 * 60.00107 * 3 2 1 31 31 H 1.08998 * 109.47045 * 299.99743 * 3 2 1 32 32 H 1.07999 * 124.80658 * 180.02562 * 6 5 4 33 33 H 1.09002 * 109.57828 * 246.15496 * 12 11 9 34 34 H 1.09002 * 109.58630 * 6.57246 * 12 11 9 35 35 H 1.08994 * 109.50033 * 174.58494 * 13 12 11 36 36 H 1.08998 * 109.49057 * 294.68064 * 13 12 11 37 37 H 1.08995 * 109.46168 * 58.66359 * 14 13 12 38 38 H 1.09002 * 109.46661 * 95.19916 * 16 15 14 39 39 H 1.08997 * 109.47635 * 215.20299 * 16 15 14 40 40 H 1.09004 * 109.46916 * 335.21015 * 16 15 14 41 41 H 0.97002 * 119.99808 * 180.02562 * 20 19 17 42 42 H 1.08997 * 109.49656 * 301.41496 * 25 14 13 43 43 H 1.08999 * 109.52170 * 181.33629 * 25 14 13 44 44 H 1.08991 * 109.58844 * 353.42336 * 26 11 9 45 45 H 1.09004 * 109.58248 * 113.70714 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 7 4.2220 1.1300 1.0985 6 6 5.5062 1.0288 0.9731 7 16 5.9417 0.9874 -0.6795 8 6 4.2467 1.1284 -1.1399 9 6 3.7230 1.1695 -2.5094 10 8 2.5251 1.0840 -2.7054 11 7 4.5685 1.3021 -3.5505 12 6 4.1213 1.0121 -4.9197 13 6 4.4219 2.2261 -5.8043 14 6 5.9063 2.5808 -5.6896 15 7 6.2038 3.7212 -6.5598 16 6 5.5183 4.9992 -6.3526 17 6 7.1227 3.5926 -7.5668 18 1 7.4783 2.6134 -7.8516 19 6 7.5974 4.7208 -8.2217 20 7 7.6077 5.8838 -7.6054 21 14 8.2213 4.5885 -9.9775 22 1 7.1289 4.0970 -10.8552 23 1 8.6688 5.9247 -10.4457 24 1 9.3616 3.6384 -10.0271 25 6 6.2348 2.9460 -4.2402 26 6 5.9548 1.7401 -3.3379 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.6885 1.8464 0.8900 31 1 1.6885 1.8463 -0.8900 32 1 6.2035 0.9731 1.7959 33 1 4.6542 0.1411 -5.3012 34 1 3.0491 0.8161 -4.9200 35 1 4.1835 1.9889 -6.8410 36 1 3.8191 3.0731 -5.4765 37 1 6.5087 1.7249 -5.9940 38 1 6.1378 5.6475 -5.7328 39 1 5.3423 5.4776 -7.3160 40 1 4.5648 4.8235 -5.8545 41 1 7.9390 6.6722 -8.0632 42 1 5.6149 3.7862 -3.9273 43 1 7.2866 3.2214 -4.1634 44 1 6.0923 2.0245 -2.2948 45 1 6.6371 0.9277 -3.5882 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985696088.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:50 Heat of formation + Delta-G solvation = -11.390268 kcal Electronic energy + Delta-G solvation = -27864.759765 eV Core-core repulsion = 24010.108932 eV Total energy + Delta-G solvation = -3854.650834 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.69880 -40.67764 -38.91352 -38.52466 -36.77976 -34.07816 -32.89428 -31.87822 -31.57011 -29.21083 -28.04046 -27.26190 -26.33942 -25.55661 -24.47538 -23.99142 -22.36013 -20.73262 -19.90368 -19.44084 -18.75497 -17.75955 -17.66190 -17.41069 -16.91285 -16.56141 -16.45498 -16.22704 -15.81896 -15.62782 -15.21096 -15.18899 -15.07118 -14.70458 -14.50393 -14.17899 -13.84418 -13.81587 -13.43354 -13.23460 -13.14970 -12.90438 -12.61891 -12.50178 -12.42240 -12.31927 -12.21437 -12.13501 -11.79103 -11.72505 -11.36470 -11.18833 -10.75578 -10.60063 -10.53508 -10.44995 -9.99748 -9.71256 -8.87382 -7.84973 -5.16445 -0.87682 0.10527 0.52068 1.26577 1.48015 1.52713 1.57873 1.78807 1.91325 2.53862 2.84729 3.23604 3.27527 3.43526 3.60708 3.75215 3.85796 4.01481 4.06475 4.10557 4.27769 4.33838 4.34561 4.45275 4.47666 4.53086 4.58994 4.62593 4.70153 4.80440 4.81490 4.84877 4.90710 4.96905 5.06446 5.22040 5.32686 5.46240 5.54810 5.62894 5.71870 6.11121 6.17683 6.29896 6.53843 6.89048 7.14670 7.90762 8.33383 9.20794 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020716 B = 0.002791 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.273822 B =10030.808966 C =10759.476722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.402 6.402 3 C 0.134 3.866 4 C 0.127 3.873 5 N -0.495 5.495 6 C 0.018 3.982 7 S 0.261 5.739 8 C -0.310 4.310 9 C 0.593 3.407 10 O -0.550 6.550 11 N -0.607 5.607 12 C 0.127 3.873 13 C -0.135 4.135 14 C 0.174 3.826 15 N -0.609 5.609 16 C 0.179 3.821 17 C -0.261 4.261 18 H 0.079 0.921 19 C -0.053 4.053 20 N -0.932 5.932 21 Si 0.955 3.045 22 H -0.284 1.284 23 H -0.300 1.300 24 H -0.273 1.273 25 C -0.132 4.132 26 C 0.111 3.889 27 H 0.042 0.958 28 H 0.100 0.900 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.245 0.755 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.046 0.954 37 H 0.072 0.928 38 H -0.001 1.001 39 H 0.014 0.986 40 H 0.025 0.975 41 H 0.247 0.753 42 H 0.045 0.955 43 H 0.072 0.928 44 H 0.089 0.911 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.486 -12.435 17.532 22.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.322 6.322 3 C 0.055 3.945 4 C -0.013 4.013 5 N -0.209 5.209 6 C -0.275 4.275 7 S 0.520 5.480 8 C -0.434 4.434 9 C 0.381 3.619 10 O -0.430 6.430 11 N -0.339 5.339 12 C 0.005 3.995 13 C -0.175 4.175 14 C 0.068 3.932 15 N -0.331 5.331 16 C 0.034 3.966 17 C -0.390 4.390 18 H 0.097 0.903 19 C -0.248 4.248 20 N -0.579 5.579 21 Si 0.784 3.216 22 H -0.211 1.211 23 H -0.227 1.227 24 H -0.199 1.199 25 C -0.173 4.173 26 C -0.013 4.013 27 H 0.061 0.939 28 H 0.118 0.882 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.261 0.739 33 H 0.112 0.888 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.017 0.983 39 H 0.033 0.967 40 H 0.044 0.956 41 H 0.056 0.944 42 H 0.064 0.936 43 H 0.091 0.909 44 H 0.106 0.894 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.126 -12.578 17.409 22.081 hybrid contribution -0.697 1.039 -0.990 1.595 sum -5.822 -11.539 16.419 20.896 Atomic orbital electron populations 1.22901 0.78928 1.03934 1.00764 1.87840 1.21824 1.26907 1.95591 1.20880 0.85721 0.85969 1.01907 1.20341 0.97406 0.97386 0.86145 1.66150 1.06499 1.17373 1.30913 1.29802 0.94937 0.98483 1.04304 1.84067 1.01503 1.62455 1.00002 1.25615 0.99585 1.19952 0.98292 1.16954 0.85535 0.76247 0.83138 1.90762 1.15459 1.51677 1.85085 1.47998 1.12462 1.66515 1.06964 1.21652 1.01384 0.97542 0.78941 1.22299 0.97957 0.97410 0.99788 1.20504 0.93920 0.90014 0.88801 1.44263 1.45069 1.08562 1.35197 1.20418 0.91953 0.86769 0.97449 1.19546 1.17905 0.92862 1.08715 0.90279 1.25451 1.01211 0.95896 1.02256 1.70326 1.51251 1.00256 1.36028 0.85511 0.78044 0.76145 0.81910 1.21116 1.22673 1.19910 1.22306 1.01796 0.96887 0.96283 1.22173 0.81670 0.98025 0.99459 0.93942 0.88197 0.92449 0.90756 0.91040 0.73903 0.88843 0.89650 0.90838 0.93559 0.90985 0.98273 0.96714 0.95646 0.94430 0.93612 0.90929 0.89446 0.87831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 11.01 113.37 1.25 1.84 16 2 O -0.40 -11.17 10.69 -148.98 -1.59 -12.76 16 3 C 0.13 3.55 5.64 71.24 0.40 3.95 16 4 C 0.13 3.37 6.42 42.09 0.27 3.64 16 5 N -0.50 -11.50 10.50 -190.39 -2.00 -13.50 16 6 C 0.02 0.28 12.22 130.60 1.60 1.87 16 7 S 0.26 4.20 18.83 -56.49 -1.06 3.14 16 8 C -0.31 -7.89 6.13 23.88 0.15 -7.75 16 9 C 0.59 17.52 7.52 86.45 0.65 18.17 16 10 O -0.55 -19.16 13.95 -4.29 -0.06 -19.22 16 11 N -0.61 -16.12 2.97 -823.62 -2.45 -18.57 16 12 C 0.13 3.35 6.44 86.36 0.56 3.90 16 13 C -0.13 -4.28 5.32 30.67 0.16 -4.12 16 14 C 0.17 6.26 2.55 45.02 0.11 6.38 16 15 N -0.61 -28.73 2.82 -702.62 -1.98 -30.71 16 16 C 0.18 8.74 8.09 127.77 1.03 9.78 16 17 C -0.26 -13.62 9.63 84.03 0.81 -12.81 16 18 H 0.08 3.94 7.82 -2.91 -0.02 3.92 16 19 C -0.05 -2.88 4.83 84.86 0.41 -2.47 16 20 N -0.93 -54.27 10.96 21.65 0.24 -54.03 16 21 Si 0.95 44.02 29.63 68.60 2.03 46.06 16 22 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 23 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 24 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 25 C -0.13 -4.14 5.34 30.67 0.16 -3.98 16 26 C 0.11 2.57 5.33 86.36 0.46 3.03 16 27 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.07 2.06 6.27 -2.39 -0.01 2.05 16 32 H 0.24 1.40 8.06 -2.91 -0.02 1.38 16 33 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.09 2.37 7.05 -2.39 -0.02 2.35 16 35 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.05 1.62 6.72 -2.39 -0.02 1.61 16 37 H 0.07 2.49 7.80 -2.39 -0.02 2.48 16 38 H 0.00 -0.05 7.60 -2.39 -0.02 -0.07 16 39 H 0.01 0.77 7.00 -2.39 -0.02 0.75 16 40 H 0.03 1.09 6.47 -2.39 -0.02 1.07 16 41 H 0.25 14.09 8.31 -92.71 -0.77 13.31 16 42 H 0.05 1.58 7.72 -2.39 -0.02 1.56 16 43 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 44 H 0.09 1.79 3.75 -21.57 -0.08 1.71 16 45 H 0.10 1.93 8.14 -2.38 -0.02 1.91 16 Total: -1.00 -71.45 367.85 2.08 -69.36 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: 0.93 Total: 8.79 kcal Atomic # 6 Polarization: 13.41 SS G_CDS: 8.02 Total: 21.44 kcal Atomic # 7 Polarization: -110.62 SS G_CDS: -6.19 Total: -116.81 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: -1.65 Total: -31.97 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: 4.20 SS G_CDS: -1.06 Total: 3.14 kcal Total: -71.45 2.08 -69.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985696088.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.974 kcal (2) G-P(sol) polarization free energy of solvation -71.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds