Wall clock time and date at job start Sat Apr 11 2020 05:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00565 * 2 1 4 4 C 1.50702 * 109.47408 * 180.02562 * 3 2 1 5 5 N 1.29422 * 124.80742 * 90.02372 * 4 3 2 6 6 C 1.30940 * 117.36563 * 180.02562 * 5 4 3 7 7 C 1.35655 * 114.19007 * 0.02562 * 6 5 4 8 8 C 1.46682 * 126.13108 * 180.02562 * 7 6 5 9 9 O 1.21694 * 119.99944 * 350.78670 * 8 7 6 10 10 N 1.34770 * 120.00415 * 170.78770 * 8 7 6 11 11 C 1.46924 * 120.63462 * 164.52536 * 10 8 7 12 12 C 1.53186 * 108.77902 * 126.66584 * 11 10 8 13 13 C 1.53039 * 109.31015 * 54.63704 * 12 11 10 14 14 N 1.46505 * 109.44807 * 178.62333 * 13 12 11 15 15 C 1.46501 * 120.00023 * 60.06153 * 14 13 12 16 16 C 1.36943 * 120.00012 * 240.06031 * 14 13 12 17 17 H 1.08001 * 119.99558 * 13.37514 * 16 14 13 18 18 C 1.38811 * 120.00088 * 193.37719 * 16 14 13 19 19 N 1.31620 * 119.99851 * 24.81148 * 18 16 14 20 20 Si 1.86805 * 119.99767 * 204.81344 * 18 16 14 21 21 H 1.48498 * 109.47028 * 89.99972 * 20 18 16 22 22 H 1.48501 * 109.46522 * 209.99804 * 20 18 16 23 23 H 1.48491 * 109.47198 * 329.99991 * 20 18 16 24 24 C 1.53036 * 109.53942 * 298.63285 * 13 12 11 25 25 C 1.46929 * 120.62889 * 344.80609 * 10 8 7 26 26 S 1.70951 * 124.80253 * 270.33636 * 4 3 2 27 27 H 1.09001 * 109.47188 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46616 * 299.99626 * 1 2 3 29 29 H 1.08991 * 109.47112 * 59.99858 * 1 2 3 30 30 H 1.09003 * 109.47140 * 60.00142 * 3 2 1 31 31 H 1.09007 * 109.46806 * 300.00420 * 3 2 1 32 32 H 1.08006 * 122.89911 * 180.02562 * 6 5 4 33 33 H 1.08998 * 109.58811 * 246.45600 * 11 10 8 34 34 H 1.09002 * 109.58537 * 6.88054 * 11 10 8 35 35 H 1.08996 * 109.49933 * 294.68717 * 12 11 10 36 36 H 1.08997 * 109.50357 * 174.58585 * 12 11 10 37 37 H 1.08997 * 109.46223 * 58.65661 * 13 12 11 38 38 H 1.08996 * 109.47063 * 95.36367 * 15 14 13 39 39 H 1.09001 * 109.46779 * 215.35947 * 15 14 13 40 40 H 1.08992 * 109.46906 * 335.35856 * 15 14 13 41 41 H 0.97001 * 119.99516 * 179.97438 * 19 18 16 42 42 H 1.08999 * 109.50036 * 301.41892 * 24 13 12 43 43 H 1.09002 * 109.52854 * 181.32986 * 24 13 12 44 44 H 1.08999 * 109.58841 * 353.12109 * 25 10 8 45 45 H 1.09006 * 109.58414 * 113.40364 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 -0.0006 5 7 4.2487 1.1286 -1.0636 6 6 5.5430 1.0254 -0.8946 7 6 5.9331 0.9927 0.4043 8 6 7.3127 0.8828 0.8905 9 8 8.2155 0.6432 0.1105 10 7 7.5804 1.0472 2.2011 11 6 8.8684 0.6168 2.7618 12 6 9.4992 1.7955 3.5098 13 6 8.5074 2.3252 4.5479 14 7 9.1199 3.4316 5.2876 15 6 9.5612 4.6334 4.5755 16 6 9.2798 3.3424 6.6448 17 1 9.1601 2.3907 7.1411 18 6 9.5956 4.4751 7.3823 19 7 9.2760 5.6677 6.9263 20 14 10.4744 4.3068 9.0222 21 1 11.9426 4.3433 8.8030 22 1 10.0788 5.4272 9.9129 23 1 10.1002 3.0162 9.6541 24 6 7.2438 2.8218 3.8418 25 6 6.5874 1.6548 3.0975 26 16 4.4852 1.1007 1.4026 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 1.6888 1.8463 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 6.2397 0.9710 -1.7181 33 1 8.7079 -0.2107 3.4528 34 1 9.5300 0.2994 1.9558 35 1 9.7424 2.5876 2.8016 36 1 10.4082 1.4636 4.0114 37 1 8.2456 1.5258 5.2411 38 1 8.7774 5.3895 4.6182 39 1 10.4660 5.0212 5.0435 40 1 9.7688 4.3835 3.5351 41 1 9.4964 6.4592 7.4419 42 1 7.5081 3.6043 3.1304 43 1 6.5472 3.2208 4.5792 44 1 5.7439 2.0222 2.5131 45 1 6.2390 0.9112 3.8144 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985816438.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:56 Heat of formation + Delta-G solvation = -14.181805 kcal Electronic energy + Delta-G solvation = -27231.433173 eV Core-core repulsion = 23376.661289 eV Total energy + Delta-G solvation = -3854.771884 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.56063 -40.67997 -39.02568 -38.67597 -36.80015 -34.10708 -32.98973 -31.95482 -31.54909 -29.51096 -28.04287 -27.22064 -26.48204 -25.14995 -24.40429 -23.94798 -22.46922 -20.81127 -20.00462 -19.46179 -18.75834 -17.86028 -17.63232 -17.48332 -16.94071 -16.60910 -16.57790 -16.25231 -15.83851 -15.60262 -15.23234 -15.20101 -15.08927 -14.75383 -14.56170 -14.02350 -13.84733 -13.68770 -13.45584 -13.25511 -13.16971 -12.89873 -12.73050 -12.57535 -12.43371 -12.37785 -12.20416 -12.08523 -11.80623 -11.73853 -11.40620 -11.21721 -10.85129 -10.67259 -10.56679 -10.48318 -10.05351 -9.75720 -8.86667 -7.83995 -5.17771 -0.97269 0.02634 0.44300 1.21727 1.48090 1.51939 1.58562 1.76857 1.96408 2.53561 2.64282 3.22447 3.28506 3.37730 3.59526 3.72785 3.81516 4.00206 4.09031 4.10891 4.24186 4.27236 4.32789 4.36659 4.45833 4.54583 4.60257 4.61115 4.69214 4.79943 4.84534 4.90685 4.91878 4.96617 5.05786 5.22148 5.31380 5.46019 5.54213 5.63514 5.72073 6.04897 6.14052 6.30488 6.49245 6.83794 7.14949 7.90489 8.33160 9.21526 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017680 B = 0.002606 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.314948 B =10740.357342 C =11698.750140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.410 6.410 3 C 0.133 3.867 4 C 0.018 3.982 5 N -0.487 5.487 6 C 0.116 3.884 7 C -0.317 4.317 8 C 0.597 3.403 9 O -0.561 6.561 10 N -0.606 5.606 11 C 0.125 3.875 12 C -0.136 4.136 13 C 0.174 3.826 14 N -0.609 5.609 15 C 0.179 3.821 16 C -0.257 4.257 17 H 0.080 0.920 18 C -0.055 4.055 19 N -0.934 5.934 20 Si 0.957 3.043 21 H -0.293 1.293 22 H -0.300 1.300 23 H -0.266 1.266 24 C -0.133 4.133 25 C 0.111 3.889 26 S 0.278 5.722 27 H 0.098 0.902 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.190 0.810 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.046 0.954 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.000 1.000 39 H 0.014 0.986 40 H 0.025 0.975 41 H 0.246 0.754 42 H 0.046 0.954 43 H 0.073 0.927 44 H 0.086 0.914 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.124 -11.261 -12.092 23.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.330 6.330 3 C 0.054 3.946 4 C -0.255 4.255 5 N -0.203 5.203 6 C -0.043 4.043 7 C -0.442 4.442 8 C 0.385 3.615 9 O -0.442 6.442 10 N -0.339 5.339 11 C 0.003 3.997 12 C -0.176 4.176 13 C 0.068 3.932 14 N -0.331 5.331 15 C 0.034 3.966 16 C -0.387 4.387 17 H 0.098 0.902 18 C -0.250 4.250 19 N -0.581 5.581 20 Si 0.786 3.214 21 H -0.221 1.221 22 H -0.227 1.227 23 H -0.190 1.190 24 C -0.173 4.173 25 C -0.013 4.013 26 S 0.537 5.463 27 H 0.116 0.884 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.122 0.878 31 H 0.109 0.891 32 H 0.207 0.793 33 H 0.114 0.886 34 H 0.104 0.896 35 H 0.065 0.935 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.019 0.981 39 H 0.032 0.968 40 H 0.043 0.957 41 H 0.055 0.945 42 H 0.065 0.935 43 H 0.092 0.908 44 H 0.103 0.897 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -17.088 -11.385 -11.806 23.686 hybrid contribution 1.210 0.848 0.003 1.478 sum -15.878 -10.537 -11.804 22.416 Atomic orbital electron populations 1.23023 0.77989 1.04326 1.01699 1.87905 1.22487 1.26749 1.95819 1.21046 0.82788 0.86267 1.04526 1.27967 1.02369 1.01161 0.94011 1.66281 1.04776 1.16494 1.32758 1.22260 0.91093 0.95167 0.95752 1.25821 0.98581 1.20809 0.98966 1.16964 0.86142 0.76365 0.81995 1.90795 1.46705 1.51303 1.55431 1.48014 1.18252 1.60405 1.07196 1.21688 0.83270 0.96658 0.98053 1.22308 0.99752 0.97454 0.98043 1.20506 0.90670 0.89954 0.92118 1.44271 1.69405 1.15940 1.03512 1.20427 0.96702 0.87888 0.91620 1.19592 1.41281 0.93845 0.83946 0.90248 1.25488 1.03015 0.95242 1.01258 1.70320 1.49195 0.97768 1.40798 0.85406 0.78701 0.77168 0.80107 1.22057 1.22747 1.19017 1.22310 0.98915 0.97025 0.99038 1.22170 0.89737 0.96282 0.93098 1.84005 0.92839 1.62020 1.07392 0.88391 0.91929 0.92635 0.87771 0.89145 0.79323 0.88621 0.89557 0.93531 0.90702 0.90899 0.98141 0.96755 0.95653 0.94466 0.93514 0.90831 0.89683 0.87723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.46 16 2 O -0.41 -6.73 10.69 -148.98 -1.59 -8.32 16 3 C 0.13 1.84 6.51 71.24 0.46 2.31 16 4 C 0.02 0.35 7.02 88.46 0.62 0.97 16 5 N -0.49 -11.79 10.51 -190.31 -2.00 -13.79 16 6 C 0.12 2.89 11.10 84.23 0.94 3.82 16 7 C -0.32 -7.88 6.15 23.88 0.15 -7.73 16 8 C 0.60 17.39 7.57 86.45 0.65 18.05 16 9 O -0.56 -19.74 16.38 -4.33 -0.07 -19.81 16 10 N -0.61 -16.05 2.97 -823.61 -2.45 -18.50 16 11 C 0.13 3.28 6.44 86.36 0.56 3.83 16 12 C -0.14 -4.30 5.32 30.67 0.16 -4.13 16 13 C 0.17 6.24 2.55 45.02 0.11 6.35 16 14 N -0.61 -28.68 2.82 -702.64 -1.98 -30.67 16 15 C 0.18 8.72 8.08 127.77 1.03 9.75 16 16 C -0.26 -13.37 9.63 84.03 0.81 -12.56 16 17 H 0.08 3.95 7.82 -2.91 -0.02 3.92 16 18 C -0.05 -2.99 4.87 84.86 0.41 -2.58 16 19 N -0.93 -54.37 10.90 21.65 0.24 -54.13 16 20 Si 0.96 44.04 29.62 68.60 2.03 46.07 16 21 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 22 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 23 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 24 C -0.13 -4.14 5.34 30.67 0.16 -3.97 16 25 C 0.11 2.59 5.33 86.36 0.46 3.06 16 26 S 0.28 5.09 18.75 -56.49 -1.06 4.03 16 27 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 0.32 8.14 -2.38 -0.02 0.30 16 29 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.19 4.40 8.06 -2.91 -0.02 4.38 16 33 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.09 2.37 7.05 -2.39 -0.02 2.35 16 35 H 0.05 1.63 6.72 -2.39 -0.02 1.62 16 36 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.07 2.51 7.81 -2.39 -0.02 2.49 16 38 H 0.00 0.02 7.56 -2.39 -0.02 0.00 16 39 H 0.01 0.75 7.03 -2.39 -0.02 0.73 16 40 H 0.03 1.09 6.47 -2.39 -0.02 1.07 16 41 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 42 H 0.05 1.61 7.72 -2.39 -0.02 1.59 16 43 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 44 H 0.09 1.78 3.71 -21.80 -0.08 1.70 16 45 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 Total: -1.00 -70.22 372.42 1.83 -68.40 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: 0.93 Total: 8.08 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: 7.78 Total: 18.63 kcal Atomic # 7 Polarization: -110.89 SS G_CDS: -6.19 Total: -117.08 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -1.66 Total: -28.13 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: 5.09 SS G_CDS: -1.06 Total: 4.03 kcal Total: -70.22 1.83 -68.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985816438.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.213 kcal (2) G-P(sol) polarization free energy of solvation -70.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds