Wall clock time and date at job start Sat Apr 11 2020 05:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47214 * 2 1 4 4 C 1.34772 * 119.99771 * 276.83785 * 3 2 1 5 5 O 1.21646 * 119.99729 * 176.14286 * 4 3 2 6 6 C 1.47179 * 120.00204 * 356.14644 * 4 3 2 7 7 C 1.35093 * 122.48868 * 186.46430 * 6 4 3 8 8 S 1.76189 * 108.22003 * 179.91208 * 7 6 4 9 9 C 1.76048 * 90.15798 * 0.29718 * 8 7 6 10 10 O 1.35494 * 125.18003 * 179.85938 * 9 8 7 11 11 N 1.29252 * 109.64507 * 359.82743 * 9 8 7 12 12 C 1.46498 * 119.99746 * 96.84101 * 3 2 1 13 13 H 1.09001 * 110.21745 * 0.02562 * 12 3 2 14 14 C 1.50131 * 110.36760 * 122.01273 * 12 3 2 15 15 C 1.54837 * 110.81567 * 216.71623 * 14 12 3 16 16 C 1.54906 * 110.13982 * 321.13205 * 15 14 12 17 17 N 1.43432 * 116.08175 * 318.64206 * 16 15 14 18 18 C 1.36939 * 120.53671 * 271.58592 * 17 16 15 19 19 H 1.08001 * 120.00009 * 325.46889 * 18 17 16 20 20 C 1.38815 * 119.99857 * 145.46605 * 18 17 16 21 21 N 1.31623 * 119.99662 * 4.45328 * 20 18 17 22 22 Si 1.86797 * 119.99905 * 184.45836 * 20 18 17 23 23 H 1.48498 * 109.47289 * 59.99999 * 22 20 18 24 24 H 1.48499 * 109.47129 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47124 * 299.99692 * 22 20 18 26 26 C 1.50171 * 118.92667 * 91.56830 * 17 16 15 27 27 C 1.46244 * 107.52768 * 289.58958 * 26 17 16 28 28 H 1.09002 * 109.47502 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47543 * 300.00173 * 1 2 3 30 30 H 1.09003 * 109.47159 * 59.99931 * 1 2 3 31 31 H 1.09002 * 109.47059 * 239.99660 * 2 1 3 32 32 H 1.09000 * 109.46774 * 120.00416 * 2 1 3 33 33 H 1.07998 * 125.88682 * 0.02562 * 7 6 4 34 34 H 0.96702 * 114.00507 * 269.95945 * 10 9 8 35 35 H 1.09000 * 109.21077 * 337.06107 * 14 12 3 36 36 H 1.09006 * 109.20664 * 96.37249 * 14 12 3 37 37 H 1.09005 * 109.36193 * 200.92985 * 15 14 12 38 38 H 1.08997 * 109.36197 * 81.33822 * 15 14 12 39 39 H 1.09005 * 108.15851 * 196.92275 * 16 15 14 40 40 H 1.09002 * 107.99717 * 80.23706 * 16 15 14 41 41 H 0.96997 * 119.99563 * 179.97438 * 21 20 18 42 42 H 1.08992 * 109.84310 * 170.08223 * 26 17 16 43 43 H 1.08994 * 109.89902 * 49.12511 * 26 17 16 44 44 H 1.09001 * 108.52157 * 297.16522 * 27 26 17 45 45 H 1.09002 * 108.39528 * 179.56251 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1119 2.0628 -1.1589 5 8 2.4503 3.2312 -1.1516 6 6 1.8047 1.3935 -2.4332 7 6 2.0033 1.9866 -3.6306 8 16 1.5159 0.8574 -4.8922 9 6 1.0733 -0.3274 -3.6676 10 8 0.5689 -1.5594 -3.9196 11 7 1.3034 0.1567 -2.4914 12 6 2.4050 2.0214 1.2597 13 1 2.2670 1.3303 2.0913 14 6 3.8335 2.4787 1.1965 15 6 4.5326 2.2904 2.5652 16 6 3.5572 2.6440 3.7154 17 7 2.7366 3.8028 3.5126 18 6 3.1821 5.0441 3.8813 19 1 3.8046 5.1563 4.7566 20 6 2.8335 6.1580 3.1299 21 7 2.0043 6.0342 2.1152 22 14 3.5412 7.8326 3.5589 23 1 5.0222 7.7837 3.4620 24 1 3.0171 8.8490 2.6115 25 1 3.1475 8.1965 4.9437 26 6 1.3811 3.6327 2.8889 27 6 1.5836 3.2871 1.4824 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.3952 2.9806 -3.7875 34 1 -0.3965 -1.5868 -3.9684 35 1 4.3628 1.8984 0.4407 36 1 3.8606 3.5333 0.9220 37 1 5.4049 2.9420 2.6181 38 1 4.8520 1.2534 2.6682 39 1 4.1424 2.7967 4.6223 40 1 2.9022 1.7878 3.8767 41 1 1.7605 6.8126 1.5904 42 1 0.8198 4.5640 2.9641 43 1 0.8389 2.8324 3.3923 44 1 2.0885 4.1186 0.9908 45 1 0.6071 3.1525 1.0172 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998092345.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:01 Heat of formation + Delta-G solvation = 9.176828 kcal Electronic energy + Delta-G solvation = -29059.384346 eV Core-core repulsion = 25205.625368 eV Total energy + Delta-G solvation = -3853.758977 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.93686 -40.41243 -39.00355 -37.96979 -36.90699 -34.76297 -33.14311 -32.48452 -31.21901 -30.58715 -28.02482 -26.90849 -25.22381 -24.89190 -24.48738 -22.78247 -21.80057 -20.95156 -20.56422 -19.47482 -18.72659 -18.46806 -17.68268 -16.95816 -16.81262 -16.63519 -16.29738 -15.56059 -15.42382 -15.39400 -15.25587 -15.01991 -14.76023 -14.59634 -14.19236 -13.60124 -13.52464 -13.41350 -13.12466 -13.09078 -13.03323 -12.87792 -12.79377 -12.65513 -12.41108 -12.06119 -11.98732 -11.81785 -11.76056 -11.53096 -11.26255 -10.98300 -10.80923 -10.62022 -10.36678 -10.36411 -9.92583 -9.45855 -8.43621 -7.78731 -5.34131 -0.65247 -0.06478 0.36423 0.83258 1.45999 1.48816 1.54273 2.04258 2.24952 2.47099 2.53775 3.35888 3.52998 3.67822 3.93392 4.10266 4.12235 4.18279 4.25120 4.33529 4.51479 4.55993 4.56914 4.63551 4.73729 4.76352 4.88910 4.92387 4.96715 5.15131 5.24684 5.27600 5.29235 5.39303 5.45789 5.47407 5.58431 5.68233 5.75992 5.90690 6.17571 6.29953 6.40416 6.51996 6.58777 7.20533 7.25450 7.93667 8.47988 9.23440 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018638 B = 0.003429 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.927936 B = 8163.722369 C = 8906.908116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.098 3.902 3 N -0.589 5.589 4 C 0.572 3.428 5 O -0.560 6.560 6 C 0.013 3.987 7 C -0.179 4.179 8 S 0.163 5.837 9 C 0.256 3.744 10 O -0.429 6.429 11 N -0.463 5.463 12 C 0.166 3.834 13 H 0.099 0.901 14 C -0.094 4.094 15 C -0.134 4.134 16 C 0.152 3.848 17 N -0.603 5.603 18 C -0.268 4.268 19 H 0.062 0.938 20 C -0.035 4.035 21 N -0.912 5.912 22 Si 0.957 3.043 23 H -0.283 1.283 24 H -0.297 1.297 25 H -0.275 1.275 26 C 0.173 3.827 27 C -0.112 4.112 28 H 0.086 0.914 29 H 0.035 0.965 30 H 0.043 0.957 31 H 0.115 0.885 32 H 0.082 0.918 33 H 0.190 0.810 34 H 0.432 0.568 35 H 0.040 0.960 36 H 0.029 0.971 37 H 0.038 0.962 38 H 0.081 0.919 39 H 0.034 0.966 40 H 0.048 0.952 41 H 0.244 0.756 42 H 0.061 0.939 43 H 0.019 0.981 44 H 0.077 0.923 45 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.661 -18.671 -14.153 23.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.024 4.024 3 N -0.319 5.319 4 C 0.357 3.643 5 O -0.439 6.439 6 C -0.119 4.119 7 C -0.321 4.321 8 S 0.412 5.588 9 C -0.064 4.064 10 O -0.240 6.240 11 N -0.190 5.190 12 C 0.063 3.937 13 H 0.117 0.883 14 C -0.132 4.132 15 C -0.175 4.175 16 C 0.024 3.976 17 N -0.326 5.326 18 C -0.399 4.399 19 H 0.079 0.921 20 C -0.231 4.231 21 N -0.557 5.557 22 Si 0.786 3.214 23 H -0.209 1.209 24 H -0.224 1.224 25 H -0.201 1.201 26 C 0.049 3.951 27 C -0.152 4.152 28 H 0.105 0.895 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.132 0.868 32 H 0.100 0.900 33 H 0.207 0.793 34 H 0.295 0.705 35 H 0.058 0.942 36 H 0.048 0.952 37 H 0.057 0.943 38 H 0.100 0.900 39 H 0.052 0.948 40 H 0.066 0.934 41 H 0.054 0.946 42 H 0.080 0.920 43 H 0.037 0.963 44 H 0.096 0.904 45 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -4.195 -18.512 -14.897 24.129 hybrid contribution 0.040 2.025 0.806 2.180 sum -4.155 -16.488 -14.091 22.083 Atomic orbital electron populations 1.21938 0.95269 1.02551 1.00348 1.22216 0.95364 0.80280 1.04553 1.48217 1.63039 1.15189 1.05468 1.17641 0.77855 0.85365 0.83407 1.90902 1.49083 1.16918 1.86958 1.19758 1.06809 0.90827 0.94475 1.27297 1.04965 1.05471 0.94338 1.85050 1.59025 1.05528 1.09196 1.25417 1.01491 0.90768 0.88717 1.84826 1.30101 1.19147 1.89930 1.67156 1.16875 1.10553 1.24426 1.20371 0.94425 0.94520 0.84340 0.88318 1.21506 0.95019 0.99611 0.97107 1.22807 0.98680 1.00468 0.95528 1.20572 0.92657 0.89306 0.95050 1.44202 1.12834 1.03247 1.72288 1.19312 1.29067 0.85279 1.06196 0.92054 1.25935 0.99556 1.01643 0.95995 1.70092 1.35950 1.28798 1.20813 0.85522 0.78328 0.80436 0.77151 1.20890 1.22389 1.20102 1.20031 0.86421 0.97883 0.90766 1.21086 0.97119 0.97747 0.99210 0.89536 0.94538 0.93839 0.86806 0.90001 0.79258 0.70471 0.94162 0.95163 0.94326 0.90008 0.94783 0.93352 0.94639 0.92045 0.96337 0.90415 0.96987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 9.64 71.98 0.69 -2.63 16 2 C 0.10 2.51 5.71 86.38 0.49 3.00 16 3 N -0.59 -20.36 2.32 -808.02 -1.88 -22.23 16 4 C 0.57 21.53 6.92 86.59 0.60 22.12 16 5 O -0.56 -26.33 13.97 -4.18 -0.06 -26.38 16 6 C 0.01 0.36 6.35 40.50 0.26 0.61 16 7 C -0.18 -4.25 10.84 67.10 0.73 -3.53 16 8 S 0.16 2.44 23.42 -56.49 -1.32 1.12 16 9 C 0.26 4.21 8.88 130.62 1.16 5.37 16 10 O -0.43 -4.38 13.64 -87.95 -1.20 -5.58 16 11 N -0.46 -10.54 5.13 -304.24 -1.56 -12.10 16 12 C 0.17 6.55 2.38 43.91 0.10 6.66 16 13 H 0.10 3.53 5.89 -2.39 -0.01 3.51 16 14 C -0.09 -4.01 4.24 30.30 0.13 -3.88 16 15 C -0.13 -5.17 6.41 31.87 0.20 -4.96 16 16 C 0.15 6.37 5.18 87.60 0.45 6.82 16 17 N -0.60 -30.79 2.59 -707.82 -1.84 -32.62 16 18 C -0.27 -15.10 9.57 84.03 0.80 -14.30 16 19 H 0.06 3.40 7.83 -2.91 -0.02 3.37 16 20 C -0.03 -1.98 5.34 84.86 0.45 -1.53 16 21 N -0.91 -54.92 8.85 21.65 0.19 -54.73 16 22 Si 0.96 46.68 29.56 68.60 2.03 48.71 16 23 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 24 H -0.30 -14.70 7.11 99.48 0.71 -14.00 16 25 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 26 C 0.17 8.62 5.23 83.58 0.44 9.06 16 27 C -0.11 -5.40 3.62 28.36 0.10 -5.29 16 28 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.04 1.10 6.90 -2.39 -0.02 1.08 16 31 H 0.11 2.82 5.24 -2.39 -0.01 2.80 16 32 H 0.08 1.84 7.80 -2.39 -0.02 1.83 16 33 H 0.19 4.54 8.02 -2.91 -0.02 4.52 16 34 H 0.43 -0.22 9.06 -74.06 -0.67 -0.89 16 35 H 0.04 1.62 7.82 -2.39 -0.02 1.60 16 36 H 0.03 1.62 6.45 -2.38 -0.02 1.60 16 37 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 38 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 39 H 0.03 1.40 8.00 -2.38 -0.02 1.38 16 40 H 0.05 1.78 6.88 -2.39 -0.02 1.77 16 41 H 0.24 14.66 8.31 -92.71 -0.77 13.89 16 42 H 0.06 3.51 6.13 -2.39 -0.01 3.50 16 43 H 0.02 0.83 8.13 -2.39 -0.02 0.82 16 44 H 0.08 4.52 4.25 -2.39 -0.01 4.51 16 45 H 0.01 0.56 8.02 -2.39 -0.02 0.54 16 Total: -1.00 -74.41 358.41 1.35 -73.07 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 0.36 Total: 13.25 kcal Atomic # 6 Polarization: 10.90 SS G_CDS: 6.62 Total: 17.52 kcal Atomic # 7 Polarization: -116.61 SS G_CDS: -5.08 Total: -121.69 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -1.26 Total: -31.97 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -1.32 Total: 1.12 kcal Total: -74.41 1.35 -73.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998092345.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.242 kcal (2) G-P(sol) polarization free energy of solvation -74.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds