Wall clock time and date at job start Sat Apr 11 2020 05:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46497 * 109.47287 * 2 1 4 4 C 1.34776 * 120.00207 * 83.22238 * 3 2 1 5 5 O 1.21633 * 120.00487 * 184.93803 * 4 3 2 6 6 C 1.47273 * 119.99868 * 4.93395 * 4 3 2 7 7 C 1.35208 * 123.14203 * 173.74468 * 6 4 3 8 8 S 1.70936 * 108.82625 * 179.73298 * 7 6 4 9 9 C 1.70765 * 91.13077 * 0.24578 * 8 7 6 10 10 C 1.50699 * 124.72308 * 180.02562 * 9 8 7 11 11 O 1.42898 * 109.47301 * 269.97269 * 10 9 8 12 12 C 1.42898 * 114.00414 * 179.97438 * 11 10 9 13 13 N 1.28654 * 110.56121 * 359.97438 * 9 8 7 14 14 C 1.46507 * 120.00201 * 263.21986 * 3 2 1 15 15 H 1.08998 * 110.88057 * 10.09592 * 14 3 2 16 16 C 1.55152 * 111.00484 * 246.21344 * 14 3 2 17 17 C 1.54328 * 102.94503 * 277.42759 * 16 14 3 18 18 N 1.47028 * 107.26521 * 337.80678 * 17 16 14 19 19 C 1.36932 * 125.64489 * 178.98716 * 18 17 16 20 20 H 1.08001 * 120.00032 * 179.97438 * 19 18 17 21 21 C 1.38812 * 120.00223 * 359.97287 * 19 18 17 22 22 N 1.31617 * 119.99786 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00362 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46939 * 90.00494 * 23 21 19 25 25 H 1.48492 * 109.47370 * 210.00520 * 23 21 19 26 26 H 1.48501 * 109.46886 * 330.00568 * 23 21 19 27 27 C 1.47423 * 108.70462 * 358.94247 * 18 17 16 28 28 H 1.08998 * 109.47376 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47253 * 300.00098 * 1 2 3 30 30 H 1.09003 * 109.47118 * 59.99606 * 1 2 3 31 31 H 1.09002 * 109.47253 * 239.99901 * 2 1 3 32 32 H 1.09001 * 109.47366 * 119.99925 * 2 1 3 33 33 H 1.08000 * 125.58259 * 359.97438 * 7 6 4 34 34 H 1.09002 * 109.47291 * 29.97094 * 10 9 8 35 35 H 1.09001 * 109.47784 * 149.97283 * 10 9 8 36 36 H 1.08999 * 109.47228 * 299.99846 * 12 11 10 37 37 H 1.08993 * 109.46966 * 60.00154 * 12 11 10 38 38 H 1.09001 * 109.46974 * 179.97438 * 12 11 10 39 39 H 1.08997 * 110.72389 * 35.79025 * 16 14 3 40 40 H 1.09003 * 110.71868 * 159.06409 * 16 14 3 41 41 H 1.08995 * 109.88421 * 97.22468 * 17 16 14 42 42 H 1.08996 * 109.88177 * 218.39609 * 17 16 14 43 43 H 0.97009 * 119.99903 * 179.97438 * 22 21 19 44 44 H 1.09005 * 110.36395 * 265.28827 * 27 18 17 45 45 H 1.09006 * 110.36397 * 142.96888 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1131 2.0625 1.1590 5 8 2.4323 3.2361 1.1503 6 6 1.8301 1.3859 2.4361 7 6 2.0230 1.9694 3.6405 8 16 1.5725 0.8665 4.8663 9 6 1.1597 -0.3119 3.7014 10 6 0.6312 -1.6865 4.0208 11 8 1.7238 -2.5974 4.1565 12 6 1.3298 -3.9365 4.4620 13 7 1.3617 0.1374 2.5129 14 6 2.4037 2.0219 -1.2599 15 1 2.1052 1.4126 -2.1129 16 6 3.9270 2.3149 -1.2916 17 6 4.0398 3.6434 -0.5144 18 7 2.7226 4.2943 -0.5694 19 6 2.3974 5.4882 0.0170 20 1 1.3974 5.8840 -0.0824 21 6 3.3529 6.1899 0.7391 22 7 4.5717 5.7079 0.8597 23 14 2.9095 7.8190 1.5384 24 1 2.4083 7.5748 2.9148 25 1 4.1137 8.6859 1.5966 26 1 1.8538 8.4914 0.7392 27 6 1.8103 3.4492 -1.3612 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.3964 2.9699 3.8014 34 1 0.0691 -1.6518 4.9541 35 1 -0.0226 -2.0208 3.2152 36 1 0.7825 -3.9482 5.4046 37 1 0.6904 -4.3177 3.6658 38 1 2.2160 -4.5653 4.5482 39 1 4.4824 1.5245 -0.7867 40 1 4.2749 2.4374 -2.3173 41 1 4.3122 3.4446 0.5220 42 1 4.7891 4.2831 -0.9807 43 1 5.2396 6.1985 1.3641 44 1 1.7925 3.7798 -2.3997 45 1 0.8065 3.4738 -0.9371 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034054209.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:43 Heat of formation + Delta-G solvation = 42.491864 kcal Electronic energy + Delta-G solvation = -29076.313034 eV Core-core repulsion = 25223.998705 eV Total energy + Delta-G solvation = -3852.314329 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.80528 -40.31997 -38.71368 -37.56575 -36.57308 -34.08467 -32.48332 -31.41865 -30.40220 -29.08571 -28.90314 -27.06128 -26.51359 -25.69839 -23.97007 -22.54853 -21.81043 -21.34252 -20.22653 -19.00348 -18.37685 -17.66826 -17.48513 -17.17006 -16.66051 -16.55231 -16.30568 -16.24720 -15.67055 -15.59165 -15.02671 -14.82490 -14.65240 -14.33365 -13.69552 -13.61634 -13.53183 -13.40898 -13.25941 -13.09456 -12.91904 -12.83660 -12.72975 -12.60070 -12.29659 -12.16732 -12.07588 -11.97549 -11.68977 -11.60366 -11.38454 -10.71282 -10.68792 -10.56496 -10.45217 -10.27175 -9.84361 -9.26192 -8.28956 -7.61583 -4.84713 -0.49921 0.24739 0.60916 1.04598 1.41694 1.44336 1.51730 2.26635 2.57655 2.61157 2.72768 3.30693 3.55816 3.78801 3.84665 3.98205 4.07311 4.23558 4.26513 4.28573 4.30125 4.40302 4.48294 4.60120 4.66015 4.66130 4.69750 4.75311 4.80742 4.88270 4.95354 4.95987 5.04559 5.13878 5.16670 5.31633 5.53822 5.56831 5.83040 5.99871 6.08492 6.15185 6.40526 6.43081 6.75457 7.33346 7.69336 8.04099 8.69129 9.50390 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014405 B = 0.004152 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.302346 B = 6741.732399 C = 7990.336684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.101 3.899 3 N -0.595 5.595 4 C 0.524 3.476 5 O -0.456 6.456 6 C 0.005 3.995 7 C -0.254 4.254 8 S 0.289 5.711 9 C -0.002 4.002 10 C 0.145 3.855 11 O -0.412 6.412 12 C 0.027 3.973 13 N -0.420 5.420 14 C 0.145 3.855 15 H 0.132 0.868 16 C -0.146 4.146 17 C 0.205 3.795 18 N -0.578 5.578 19 C -0.187 4.187 20 H 0.060 0.940 21 C -0.067 4.067 22 N -0.949 5.949 23 Si 0.958 3.042 24 H -0.297 1.297 25 H -0.298 1.298 26 H -0.274 1.274 27 C 0.127 3.873 28 H 0.082 0.918 29 H 0.031 0.969 30 H 0.044 0.956 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.164 0.836 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.094 0.906 39 H 0.064 0.936 40 H 0.086 0.914 41 H 0.013 0.987 42 H -0.013 1.013 43 H 0.233 0.767 44 H 0.037 0.963 45 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.520 -23.761 6.231 26.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.021 4.021 3 N -0.331 5.331 4 C 0.307 3.693 5 O -0.325 6.325 6 C -0.130 4.130 7 C -0.396 4.396 8 S 0.546 5.454 9 C -0.280 4.280 10 C 0.065 3.935 11 O -0.331 6.331 12 C -0.069 4.069 13 N -0.139 5.139 14 C 0.040 3.960 15 H 0.150 0.850 16 C -0.186 4.186 17 C 0.080 3.920 18 N -0.303 5.303 19 C -0.317 4.317 20 H 0.078 0.922 21 C -0.259 4.259 22 N -0.601 5.601 23 Si 0.790 3.210 24 H -0.226 1.226 25 H -0.225 1.225 26 H -0.199 1.199 27 C 0.000 4.000 28 H 0.100 0.900 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.104 0.896 32 H 0.122 0.878 33 H 0.181 0.819 34 H 0.120 0.880 35 H 0.112 0.888 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.112 0.888 39 H 0.083 0.917 40 H 0.105 0.895 41 H 0.031 0.969 42 H 0.005 0.995 43 H 0.042 0.958 44 H 0.055 0.945 45 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -10.219 -23.209 6.947 26.293 hybrid contribution 0.187 1.918 -0.189 1.936 sum -10.032 -21.291 6.759 24.487 Atomic orbital electron populations 1.21917 0.95651 1.02151 1.00186 1.22093 0.94926 0.80777 1.04325 1.47724 1.65564 1.14874 1.04891 1.18078 0.80519 0.87242 0.83479 1.91671 1.41910 1.13697 1.85267 1.20797 1.05606 0.91216 0.95417 1.26703 1.07809 1.07327 0.97782 1.82233 1.53595 1.01343 1.08184 1.27474 1.05475 1.02973 0.92077 1.20937 0.88274 0.81081 1.03171 1.87929 1.32300 1.20432 1.92408 1.22986 1.02338 0.81026 1.00561 1.67314 1.13389 1.09760 1.23408 1.22303 0.93778 0.93548 0.86348 0.85046 1.23238 0.96535 0.97727 1.01057 1.20712 0.86398 0.89143 0.95710 1.44252 1.07711 1.20322 1.57969 1.19020 0.94938 0.94175 1.23555 0.92211 1.25238 0.96293 1.01708 1.02632 1.70210 1.03188 1.39308 1.47381 0.85341 0.76399 0.80856 0.78452 1.22566 1.22451 1.19929 1.21939 0.93124 0.90561 0.94347 0.89960 0.94937 0.93729 0.89646 0.87849 0.81861 0.87996 0.88758 0.92044 0.92517 0.88781 0.91717 0.89505 0.96943 0.99518 0.95768 0.94550 0.96036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 9.69 71.98 0.70 -2.63 16 2 C 0.10 2.67 5.69 86.38 0.49 3.17 16 3 N -0.60 -21.26 2.58 -794.15 -2.05 -23.30 16 4 C 0.52 22.82 7.04 86.62 0.61 23.43 16 5 O -0.46 -24.78 8.69 -4.14 -0.04 -24.82 16 6 C 0.01 0.19 6.37 40.56 0.26 0.45 16 7 C -0.25 -8.81 10.62 67.12 0.71 -8.09 16 8 S 0.29 6.55 22.92 -56.49 -1.29 5.26 16 9 C 0.00 -0.04 6.97 88.57 0.62 0.58 16 10 C 0.14 2.14 6.51 71.24 0.46 2.61 16 11 O -0.41 -7.21 10.69 -148.98 -1.59 -8.81 16 12 C 0.03 0.24 11.01 113.37 1.25 1.49 16 13 N -0.42 -12.23 5.43 -180.83 -0.98 -13.21 16 14 C 0.14 5.15 3.77 46.38 0.17 5.33 16 15 H 0.13 3.46 7.90 -2.39 -0.02 3.44 16 16 C -0.15 -5.82 6.52 31.78 0.21 -5.62 16 17 C 0.21 11.21 4.22 86.73 0.37 11.58 16 18 N -0.58 -32.20 1.73 -691.98 -1.20 -33.40 16 19 C -0.19 -11.50 8.74 84.03 0.73 -10.77 16 20 H 0.06 3.64 7.83 -2.91 -0.02 3.62 16 21 C -0.07 -4.20 5.49 84.86 0.47 -3.74 16 22 N -0.95 -62.50 10.31 21.65 0.22 -62.28 16 23 Si 0.96 50.69 29.55 68.60 2.03 52.72 16 24 H -0.30 -15.67 7.11 99.48 0.71 -14.96 16 25 H -0.30 -15.70 7.11 99.48 0.71 -15.00 16 26 H -0.27 -13.76 7.11 99.48 0.71 -13.05 16 27 C 0.13 5.62 6.18 86.85 0.54 6.15 16 28 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.03 0.91 7.06 -2.39 -0.02 0.89 16 30 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.09 1.82 7.91 -2.39 -0.02 1.80 16 32 H 0.10 2.94 5.16 -2.39 -0.01 2.93 16 33 H 0.16 6.48 8.04 -2.91 -0.02 6.46 16 34 H 0.10 0.87 8.14 -2.39 -0.02 0.86 16 35 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 37 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 40 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 41 H 0.01 0.79 5.84 -2.39 -0.01 0.77 16 42 H -0.01 -0.82 7.50 -2.39 -0.02 -0.84 16 43 H 0.23 15.10 8.31 -92.70 -0.77 14.33 16 44 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 45 H 0.02 0.99 8.14 -2.38 -0.02 0.97 16 Total: -1.00 -83.34 367.14 3.68 -79.66 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: 0.99 Total: 4.24 kcal Atomic # 6 Polarization: 16.35 SS G_CDS: 7.58 Total: 23.94 kcal Atomic # 7 Polarization: -128.19 SS G_CDS: -4.00 Total: -132.19 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -1.63 Total: -33.63 kcal Atomic # 14 Polarization: 50.69 SS G_CDS: 2.03 Total: 52.72 kcal Atomic # 16 Polarization: 6.55 SS G_CDS: -1.29 Total: 5.26 kcal Total: -83.34 3.68 -79.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034054209.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.154 kcal (2) G-P(sol) polarization free energy of solvation -83.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds