Wall clock time and date at job start Sat Apr 11 2020 05:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35720 * 117.00244 * 2 1 4 4 C 1.39356 * 120.36068 * 0.02774 * 3 2 1 5 5 N 1.31290 * 120.87865 * 179.70022 * 4 3 2 6 6 C 1.32886 * 121.71757 * 0.56310 * 5 4 3 7 7 C 1.47762 * 119.68249 * 179.70998 * 6 5 4 8 8 O 1.21572 * 119.99499 * 179.73079 * 7 6 5 9 9 N 1.34771 * 120.00472 * 359.72793 * 7 6 5 10 10 C 1.46503 * 120.00194 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.46847 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.50946 * 60.10345 * 11 10 9 13 13 C 1.53717 * 109.48148 * 180.36236 * 11 10 9 14 14 N 1.47154 * 108.16009 * 172.39943 * 13 11 10 15 15 C 1.36931 * 120.97887 * 129.43492 * 14 13 11 16 16 H 1.08005 * 120.00440 * 333.49504 * 15 14 13 17 17 C 1.38821 * 119.99883 * 153.49763 * 15 14 13 18 18 N 1.31619 * 119.99631 * 343.07823 * 17 15 14 19 19 Si 1.86796 * 119.99899 * 162.80446 * 17 15 14 20 20 H 1.48494 * 109.47313 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47337 * 119.99994 * 19 17 15 22 22 H 1.48503 * 109.46949 * 240.00023 * 19 17 15 23 23 C 1.47149 * 118.03579 * 309.15864 * 14 13 11 24 24 C 1.53296 * 108.38694 * 50.78628 * 23 14 13 25 25 O 1.42963 * 109.22250 * 307.69880 * 24 23 14 26 26 C 1.39715 * 120.62898 * 359.43968 * 6 5 4 27 27 F 1.35100 * 120.46979 * 180.25338 * 26 6 5 28 28 C 1.38689 * 119.06650 * 0.26649 * 26 6 5 29 29 H 1.09001 * 109.47348 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46610 * 299.99985 * 1 2 3 31 31 H 1.08998 * 109.47428 * 59.99311 * 1 2 3 32 32 H 1.07998 * 119.55674 * 359.97274 * 4 3 2 33 33 H 0.97001 * 119.99690 * 0.02562 * 9 7 6 34 34 H 1.08999 * 109.46958 * 60.00489 * 10 9 7 35 35 H 1.08997 * 109.46760 * 300.00352 * 10 9 7 36 36 H 1.08999 * 109.83737 * 52.72102 * 13 11 10 37 37 H 1.09001 * 109.74797 * 292.02541 * 13 11 10 38 38 H 0.97003 * 119.99304 * 179.97438 * 18 17 15 39 39 H 1.08993 * 109.68413 * 170.50997 * 23 14 13 40 40 H 1.08997 * 109.68203 * 291.02940 * 23 14 13 41 41 H 1.09004 * 109.50741 * 67.61742 * 24 23 14 42 42 H 1.08993 * 109.51437 * 187.72356 * 24 23 14 43 43 H 1.07995 * 120.78753 * 180.02562 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 1.2936 2.3828 0.0006 5 7 1.8791 3.5579 0.0065 6 6 3.2024 3.6791 0.0010 7 6 3.8139 5.0243 0.0015 8 8 5.0240 5.1418 0.0015 9 7 3.0304 6.1208 0.0020 10 6 3.6368 7.4544 0.0031 11 6 2.5347 8.5157 0.0041 12 1 1.9173 8.3986 0.8948 13 6 3.1706 9.9152 -0.0039 14 7 2.0977 10.9054 -0.1877 15 6 1.9817 11.9825 0.6498 16 1 2.3569 11.9235 1.6609 17 6 1.3817 13.1505 0.1993 18 7 1.2268 13.3552 -1.0916 19 14 0.7873 14.4282 1.4255 20 1 1.0707 13.9592 2.8057 21 1 1.4930 15.7122 1.1839 22 1 -0.6751 14.6286 1.2619 23 6 1.1570 10.7073 -1.3017 24 6 0.6225 9.2721 -1.2338 25 8 1.7233 8.3627 -1.1629 26 6 4.0210 2.5469 0.0004 27 9 5.3660 2.6739 0.0000 28 6 3.4333 1.2906 0.0000 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 0.2152 2.3247 0.0006 33 1 2.0649 6.0270 0.0024 34 1 4.2551 7.5731 -0.8866 35 1 4.2547 7.5718 0.8934 36 1 3.8853 9.9920 -0.8232 37 1 3.6775 10.0948 0.9443 38 1 0.8072 14.1712 -1.4063 39 1 0.3299 11.4116 -1.2136 40 1 1.6724 10.8631 -2.2495 41 1 -0.0018 9.1578 -0.3476 42 1 0.0317 9.0611 -2.1251 43 1 4.0394 0.3968 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035394216.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:43 Heat of formation + Delta-G solvation = -91.129453 kcal Electronic energy + Delta-G solvation = -28941.118123 eV Core-core repulsion = 24516.796363 eV Total energy + Delta-G solvation = -4424.321760 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -49.27537 -41.24864 -39.71112 -38.60685 -38.10110 -34.92352 -34.27238 -32.88689 -31.65061 -31.11071 -30.39834 -28.24898 -27.50300 -25.80658 -24.71880 -23.51531 -23.13022 -21.85426 -20.89903 -19.73072 -19.06983 -18.40565 -18.05043 -16.89319 -16.75532 -16.64334 -16.11002 -15.91712 -15.76315 -15.46150 -15.11300 -14.90420 -14.75438 -14.36654 -14.04611 -13.76621 -13.72939 -13.60745 -13.26998 -13.13966 -12.95386 -12.71239 -12.63466 -12.39061 -12.05508 -11.54406 -11.13197 -10.87452 -10.71263 -10.53586 -10.39242 -10.25791 -10.03110 -10.01172 -9.94497 -9.63767 -9.15760 -9.05590 -8.86269 -8.55099 -6.76014 -5.85139 -3.28731 0.13363 0.48338 2.33396 2.46886 3.01086 3.33168 3.39045 3.41209 3.43457 3.65684 3.74891 3.93241 4.22054 4.33912 4.42215 4.42870 4.49346 4.54405 4.80554 4.91505 5.11952 5.16799 5.31403 5.33196 5.50085 5.52296 5.79706 5.82851 5.87606 6.05029 6.16593 6.30022 6.37922 6.43943 6.49302 6.51959 6.76052 7.07639 7.10612 7.51539 7.58992 7.70740 7.86500 8.18560 8.32633 9.10639 9.73312 10.30322 11.22906 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020786 B = 0.002192 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.734685 B =12768.802077 C =13559.233614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.303 6.303 3 C 0.130 3.870 4 C 0.010 3.990 5 N -0.389 5.389 6 C 0.011 3.989 7 C 0.568 3.432 8 O -0.529 6.529 9 N -0.696 5.696 10 C 0.129 3.871 11 C 0.065 3.935 12 H 0.060 0.940 13 C 0.122 3.878 14 N -0.594 5.594 15 C -0.254 4.254 16 H 0.070 0.930 17 C 0.001 3.999 18 N -0.902 5.902 19 Si 0.905 3.095 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.288 1.288 23 C 0.139 3.861 24 C 0.040 3.960 25 O -0.389 6.389 26 C 0.156 3.844 27 F -0.097 7.097 28 C -0.161 4.161 29 H 0.109 0.891 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.174 0.826 33 H 0.414 0.586 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.031 0.969 37 H 0.064 0.936 38 H 0.254 0.746 39 H 0.094 0.906 40 H 0.028 0.972 41 H 0.041 0.959 42 H 0.081 0.919 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.080 -27.307 1.909 27.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.213 6.213 3 C 0.081 3.919 4 C -0.152 4.152 5 N -0.100 5.100 6 C -0.128 4.128 7 C 0.352 3.648 8 O -0.405 6.405 9 N -0.347 5.347 10 C 0.005 3.995 11 C 0.005 3.995 12 H 0.078 0.922 13 C -0.006 4.006 14 N -0.318 5.318 15 C -0.383 4.383 16 H 0.087 0.913 17 C -0.197 4.197 18 N -0.547 5.547 19 Si 0.735 3.265 20 H -0.202 1.202 21 H -0.216 1.216 22 H -0.215 1.215 23 C 0.013 3.987 24 C -0.037 4.037 25 O -0.308 6.308 26 C 0.133 3.867 27 F -0.075 7.075 28 C -0.188 4.188 29 H 0.127 0.873 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.191 0.809 33 H 0.250 0.750 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.049 0.951 37 H 0.083 0.917 38 H 0.064 0.936 39 H 0.112 0.888 40 H 0.046 0.954 41 H 0.059 0.941 42 H 0.099 0.901 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -2.595 -26.574 1.708 26.755 hybrid contribution -0.480 0.222 0.642 0.832 sum -3.075 -26.352 2.351 26.635 Atomic orbital electron populations 1.23290 0.76824 1.05101 1.02315 1.86067 1.22566 1.25429 1.87286 1.20021 0.92062 0.86145 0.93692 1.23086 1.01185 0.86358 1.04619 1.67509 1.09315 1.26871 1.06320 1.21316 0.89377 0.94162 1.07986 1.17487 0.86342 0.83116 0.77844 1.90865 1.13116 1.86274 1.50268 1.45722 1.11159 1.05174 1.72613 1.21526 0.95394 0.79410 1.03145 1.22895 0.92043 0.95716 0.88844 0.92213 1.21534 0.91382 0.87667 0.99972 1.44095 1.28636 1.25166 1.33894 1.19244 1.36539 0.90103 0.92449 0.91266 1.25063 1.02136 0.96839 0.95707 1.70048 1.46491 1.26303 1.11843 0.86178 0.78361 0.81276 0.80698 1.20203 1.21636 1.21500 1.21447 0.94959 0.91965 0.90288 1.23315 0.87840 0.92413 1.00174 1.87786 1.41969 1.58277 1.42783 1.18234 0.78799 0.92723 0.96971 1.91657 1.27141 1.96407 1.92260 1.20827 0.92908 0.97754 1.07323 0.87317 0.91690 0.91664 0.80916 0.75013 0.90384 0.89857 0.95124 0.91705 0.93553 0.88786 0.95373 0.94078 0.90057 0.81958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.05 9.82 101.05 0.99 1.04 16 2 O -0.30 -1.89 10.50 -18.87 -0.20 -2.09 16 3 C 0.13 1.00 6.72 -38.86 -0.26 0.74 16 4 C 0.01 0.08 10.21 -17.37 -0.18 -0.10 16 5 N -0.39 -4.31 9.52 -9.63 -0.09 -4.40 16 6 C 0.01 0.14 6.75 -82.97 -0.56 -0.42 16 7 C 0.57 8.75 7.80 -12.37 -0.10 8.66 16 8 O -0.53 -9.61 15.30 5.30 0.08 -9.53 16 9 N -0.70 -10.23 5.44 -61.27 -0.33 -10.56 16 10 C 0.13 2.01 5.37 -4.04 -0.02 1.99 16 11 C 0.07 1.15 2.88 -26.36 -0.08 1.07 16 12 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 13 C 0.12 2.54 6.05 -3.31 -0.02 2.52 16 14 N -0.59 -14.84 3.04 -171.57 -0.52 -15.36 16 15 C -0.25 -6.88 9.65 -15.06 -0.15 -7.03 16 16 H 0.07 1.83 7.89 -52.48 -0.41 1.42 16 17 C 0.00 0.03 4.95 -17.43 -0.09 -0.05 16 18 N -0.90 -25.92 11.14 55.49 0.62 -25.30 16 19 Si 0.91 21.38 29.59 -169.99 -5.03 16.35 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 C 0.14 3.30 5.44 -3.53 -0.02 3.29 16 24 C 0.04 0.77 6.99 37.31 0.26 1.04 16 25 O -0.39 -7.35 10.13 -35.23 -0.36 -7.71 16 26 C 0.16 1.81 7.31 -38.86 -0.28 1.52 16 27 F -0.10 -1.29 15.54 2.25 0.03 -1.26 16 28 C -0.16 -1.39 10.10 -39.11 -0.40 -1.79 16 29 H 0.11 0.09 8.14 -51.93 -0.42 -0.34 16 30 H 0.06 0.10 7.67 -51.93 -0.40 -0.29 16 31 H 0.06 0.11 7.67 -51.93 -0.40 -0.29 16 32 H 0.17 0.81 6.31 -52.49 -0.33 0.48 16 33 H 0.41 5.72 7.67 -40.82 -0.31 5.41 16 34 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 1.28 7.96 -51.93 -0.41 0.87 16 38 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 39 H 0.09 2.44 6.14 -51.93 -0.32 2.12 16 40 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 43 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 364.35 15.07 5.49 5.49 Total: -1.00 -33.25 364.35 -6.72 -39.97 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -5.53 Total: 1.91 kcal Atomic # 6 Polarization: 13.37 SS G_CDS: -0.89 Total: 12.48 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: -0.33 Total: -55.63 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -0.47 Total: -19.33 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.03 Total: -1.26 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.25 -6.72 -39.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035394216.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.155 kcal (2) G-P(sol) polarization free energy of solvation -33.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds