Wall clock time and date at job start Sat Apr 11 2020 05:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35720 * 116.99911 * 2 1 4 4 C 1.39364 * 120.36069 * 0.02562 * 3 2 1 5 5 N 1.31292 * 120.88334 * 179.69898 * 4 3 2 6 6 C 1.32888 * 121.71334 * 0.57039 * 5 4 3 7 7 C 1.47766 * 119.68430 * 179.70491 * 6 5 4 8 8 O 1.21558 * 120.00128 * 185.91941 * 7 6 5 9 9 N 1.34777 * 119.99945 * 5.91680 * 7 6 5 10 10 C 1.46501 * 119.99708 * 357.24323 * 9 7 6 11 11 C 1.46494 * 120.00061 * 177.23519 * 9 7 6 12 12 H 1.09004 * 110.88394 * 3.88653 * 11 9 7 13 13 C 1.54916 * 111.00384 * 127.80504 * 11 9 7 14 14 N 1.47422 * 104.82836 * 155.08652 * 13 11 9 15 15 C 1.36946 * 125.64506 * 155.92059 * 14 13 11 16 16 H 1.07999 * 119.99530 * 354.92963 * 15 14 13 17 17 C 1.38812 * 120.00018 * 174.93398 * 15 14 13 18 18 N 1.31627 * 119.99826 * 5.10149 * 17 15 14 19 19 Si 1.86791 * 120.00009 * 185.10137 * 17 15 14 20 20 H 1.48494 * 109.47349 * 94.99975 * 19 17 15 21 21 H 1.48504 * 109.47250 * 215.00078 * 19 17 15 22 22 H 1.48501 * 109.47281 * 334.99810 * 19 17 15 23 23 C 1.47484 * 108.76429 * 335.89026 * 14 13 11 24 24 C 1.54326 * 107.03447 * 1.03063 * 23 14 13 25 25 H 1.08999 * 110.72089 * 263.78947 * 24 23 14 26 26 O 1.42898 * 110.72152 * 140.68721 * 24 23 14 27 27 C 1.39718 * 120.63019 * 359.43524 * 6 5 4 28 28 F 1.35097 * 120.46815 * 180.25402 * 27 6 5 29 29 C 1.38691 * 119.06601 * 0.26865 * 27 6 5 30 30 H 1.09006 * 109.46732 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47422 * 299.99732 * 1 2 3 32 32 H 1.08993 * 109.47028 * 60.00191 * 1 2 3 33 33 H 1.07994 * 119.55430 * 359.97438 * 4 3 2 34 34 H 1.09000 * 109.47214 * 276.10490 * 10 9 7 35 35 H 1.08992 * 109.47945 * 36.11386 * 10 9 7 36 36 H 1.09008 * 109.46928 * 156.11521 * 10 9 7 37 37 H 1.08997 * 110.36696 * 273.92947 * 13 11 9 38 38 H 1.08998 * 110.36245 * 36.14046 * 13 11 9 39 39 H 0.96997 * 119.99306 * 179.97438 * 18 17 15 40 40 H 1.09000 * 110.03744 * 241.66513 * 23 14 13 41 41 H 1.09006 * 109.96013 * 120.35109 * 23 14 13 42 42 H 0.96705 * 113.99768 * 63.84481 * 26 24 23 43 43 H 1.07993 * 120.78463 * 180.02562 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2935 2.3828 0.0005 5 7 1.8788 3.5580 0.0065 6 6 3.2021 3.6794 0.0009 7 6 3.8136 5.0246 0.0014 8 8 5.0179 5.1448 -0.1122 9 7 3.0361 6.1182 0.1277 10 6 1.5799 5.9768 0.2038 11 6 3.6471 7.4482 0.1891 12 1 4.7267 7.3866 0.0512 13 6 3.0073 8.4017 -0.8508 14 7 3.2254 9.7544 -0.3067 15 6 3.2656 10.9118 -1.0377 16 1 3.2129 10.8716 -2.1157 17 6 3.3741 12.1364 -0.3932 18 7 3.5393 12.1808 0.9119 19 14 3.2855 13.7212 -1.3780 20 1 1.8930 14.2366 -1.3623 21 1 4.1936 14.7299 -0.7752 22 1 3.6998 13.4570 -2.7793 23 6 3.3927 9.6564 1.1553 24 6 3.2964 8.1605 1.5221 25 1 2.2857 7.9059 1.8410 26 8 4.2443 7.8270 2.5381 27 6 4.0208 2.5472 0.0003 28 9 5.3657 2.6743 -0.0002 29 6 3.4332 1.2909 -0.0001 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8899 33 1 0.2151 2.3247 0.0005 34 1 1.1684 5.9078 -0.8032 35 1 1.3311 5.0735 0.7607 36 1 1.1567 6.8442 0.7105 37 1 3.5019 8.2969 -1.8164 38 1 1.9410 8.1972 -0.9473 39 1 3.6155 13.0366 1.3621 40 1 2.6030 10.2134 1.6597 41 1 4.3681 10.0472 1.4453 42 1 4.0916 8.2757 3.3811 43 1 4.0395 0.3971 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047403987.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:47 Heat of formation + Delta-G solvation = -61.988524 kcal Electronic energy + Delta-G solvation = -29956.583420 eV Core-core repulsion = 25533.525306 eV Total energy + Delta-G solvation = -4423.058115 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.17525 -41.26161 -39.84862 -38.48483 -37.57704 -35.18769 -34.72579 -32.83287 -31.86288 -30.86728 -28.61195 -28.07222 -27.25495 -26.61878 -24.99950 -24.23148 -23.40126 -21.15645 -20.39787 -19.33315 -18.90266 -18.35789 -17.40697 -17.00171 -16.74200 -16.69156 -16.50638 -15.95994 -15.82554 -15.27766 -15.05144 -14.95606 -14.56063 -14.00826 -13.94524 -13.73449 -13.53140 -13.20660 -12.93709 -12.82202 -12.65970 -12.62997 -12.24532 -12.15490 -11.98923 -11.78952 -11.34063 -11.18945 -10.85012 -10.79017 -10.26012 -10.09257 -9.97533 -9.89887 -9.79296 -9.45403 -9.23617 -9.00217 -8.67591 -8.24669 -6.89745 -5.75530 -3.10019 0.22210 0.53973 2.39083 2.58254 3.00261 3.39702 3.44705 3.46370 3.47266 3.72481 3.81261 4.00585 4.28417 4.45819 4.48133 4.50783 4.57278 4.72570 4.82282 4.93938 5.16132 5.29671 5.35733 5.45751 5.48003 5.59258 5.72054 5.82445 5.91360 5.93686 6.09059 6.16527 6.25212 6.50828 6.54855 6.66817 6.91334 7.16799 7.38666 7.47902 7.59709 7.75010 8.17297 8.23581 8.29425 9.15041 9.75697 10.39456 11.36292 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022548 B = 0.002600 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.504142 B =10765.877349 C =11165.916575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.304 6.304 3 C 0.128 3.872 4 C 0.001 3.999 5 N -0.382 5.382 6 C 0.016 3.984 7 C 0.568 3.432 8 O -0.522 6.522 9 N -0.578 5.578 10 C 0.071 3.929 11 C 0.132 3.868 12 H 0.115 0.885 13 C 0.134 3.866 14 N -0.600 5.600 15 C -0.229 4.229 16 H 0.081 0.919 17 C -0.007 4.007 18 N -0.922 5.922 19 Si 0.915 3.085 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.280 1.280 23 C 0.153 3.847 24 C 0.065 3.935 25 H 0.057 0.943 26 O -0.561 6.561 27 C 0.157 3.843 28 F -0.096 7.096 29 C -0.160 4.160 30 H 0.107 0.893 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.173 0.827 34 H 0.056 0.944 35 H 0.104 0.896 36 H 0.064 0.936 37 H 0.048 0.952 38 H 0.028 0.972 39 H 0.253 0.747 40 H 0.052 0.948 41 H 0.057 0.943 42 H 0.373 0.627 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.300 -25.171 1.067 26.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.215 6.215 3 C 0.079 3.921 4 C -0.160 4.160 5 N -0.094 5.094 6 C -0.123 4.123 7 C 0.354 3.646 8 O -0.398 6.398 9 N -0.308 5.308 10 C -0.071 4.071 11 C 0.028 3.972 12 H 0.133 0.867 13 C 0.007 3.993 14 N -0.328 5.328 15 C -0.357 4.357 16 H 0.099 0.901 17 C -0.203 4.203 18 N -0.569 5.569 19 Si 0.745 3.255 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.205 1.205 23 C 0.028 3.972 24 C 0.004 3.996 25 H 0.075 0.925 26 O -0.366 6.366 27 C 0.134 3.866 28 F -0.074 7.074 29 C -0.187 4.187 30 H 0.126 0.874 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.190 0.810 34 H 0.075 0.925 35 H 0.121 0.879 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.046 0.954 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.220 0.780 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -8.735 -24.666 0.569 26.173 hybrid contribution -0.005 0.578 0.021 0.579 sum -8.741 -24.087 0.590 25.631 Atomic orbital electron populations 1.23266 0.76952 1.05000 1.02220 1.86064 1.22459 1.25554 1.87394 1.20009 0.92042 0.86076 0.93955 1.23256 1.01315 0.86764 1.04702 1.68146 1.09142 1.25105 1.06987 1.21390 0.89394 0.94227 1.07317 1.17490 0.86147 0.82860 0.78121 1.90860 1.13424 1.85656 1.49854 1.47549 1.07660 1.05646 1.69992 1.22393 0.78816 1.03402 1.02504 1.22473 1.00171 0.79637 0.94944 0.86669 1.21748 0.97201 0.85364 0.95007 1.44354 1.85004 1.00735 1.02678 1.19090 1.43841 0.82590 0.90179 0.90131 1.24833 1.01852 0.97700 0.95950 1.69947 1.55739 1.24129 1.07097 0.86052 0.77412 0.83105 0.78922 1.21586 1.21700 1.20549 1.21928 1.01923 0.88304 0.85043 1.23586 0.90741 0.97578 0.87657 0.92535 1.86501 1.55077 1.70971 1.24012 1.18216 0.78849 0.92650 0.96928 1.91663 1.27121 1.96398 1.92221 1.20818 0.92921 0.97694 1.07255 0.87420 0.91762 0.91738 0.80992 0.92498 0.87858 0.91724 0.93364 0.95404 0.93654 0.93009 0.92463 0.77996 0.82027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.05 9.82 101.05 0.99 1.05 16 2 O -0.30 -2.00 10.50 -18.87 -0.20 -2.20 16 3 C 0.13 1.04 6.72 -38.86 -0.26 0.78 16 4 C 0.00 0.01 10.21 -17.36 -0.18 -0.17 16 5 N -0.38 -4.33 5.96 -9.63 -0.06 -4.39 16 6 C 0.02 0.22 6.64 -82.96 -0.55 -0.33 16 7 C 0.57 10.20 7.65 -12.36 -0.09 10.11 16 8 O -0.52 -11.17 14.71 5.32 0.08 -11.09 16 9 N -0.58 -10.01 2.91 -172.62 -0.50 -10.51 16 10 C 0.07 0.97 7.95 59.85 0.48 1.45 16 11 C 0.13 2.67 3.17 -65.78 -0.21 2.46 16 12 H 0.12 2.68 7.01 -51.93 -0.36 2.31 16 13 C 0.13 2.89 6.79 -2.53 -0.02 2.87 16 14 N -0.60 -15.51 3.41 -169.69 -0.58 -16.08 16 15 C -0.23 -6.41 10.27 -15.05 -0.15 -6.56 16 16 H 0.08 2.18 7.83 -52.49 -0.41 1.76 16 17 C -0.01 -0.20 5.48 -17.43 -0.10 -0.29 16 18 N -0.92 -26.93 10.34 55.49 0.57 -26.36 16 19 Si 0.91 22.12 29.56 -169.99 -5.02 17.10 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 C 0.15 3.74 5.17 -2.81 -0.01 3.73 16 24 C 0.06 1.30 3.86 -24.89 -0.10 1.20 16 25 H 0.06 1.03 6.47 -51.93 -0.34 0.69 16 26 O -0.56 -10.88 13.39 -35.23 -0.47 -11.35 16 27 C 0.16 2.01 7.30 -38.86 -0.28 1.73 16 28 F -0.10 -1.44 15.56 2.25 0.04 -1.41 16 29 C -0.16 -1.51 10.10 -39.11 -0.40 -1.90 16 30 H 0.11 0.11 8.14 -51.93 -0.42 -0.32 16 31 H 0.06 0.11 7.67 -51.93 -0.40 -0.29 16 32 H 0.06 0.11 7.67 -51.93 -0.40 -0.29 16 33 H 0.17 0.77 6.31 -52.49 -0.33 0.44 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.10 1.26 5.14 -53.91 -0.28 0.98 16 36 H 0.06 0.89 6.36 -51.92 -0.33 0.56 16 37 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.03 0.57 6.94 -51.93 -0.36 0.21 16 39 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 40 H 0.05 1.35 7.38 -51.93 -0.38 0.97 16 41 H 0.06 1.57 7.46 -51.93 -0.39 1.18 16 42 H 0.37 5.60 9.12 45.56 0.42 6.01 16 43 H 0.16 1.17 8.06 -52.49 -0.42 0.74 16 LS Contribution 354.94 15.07 5.35 5.35 Total: -1.00 -35.47 354.94 -6.07 -41.54 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -4.39 Total: 3.29 kcal Atomic # 6 Polarization: 17.00 SS G_CDS: -0.88 Total: 16.11 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: -0.56 Total: -57.34 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -0.59 Total: -24.65 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.41 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.47 -6.07 -41.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047403987.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.452 kcal (2) G-P(sol) polarization free energy of solvation -35.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds