Wall clock time and date at job start Sat Apr 11 2020 05:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35724 * 117.00173 * 2 1 4 4 C 1.39357 * 120.35922 * 359.97438 * 3 2 1 5 5 N 1.31285 * 120.88495 * 179.76660 * 4 3 2 6 6 C 1.32900 * 121.71144 * 0.52466 * 5 4 3 7 7 C 1.47754 * 119.68328 * 179.75381 * 6 5 4 8 8 O 1.21570 * 120.00180 * 179.72623 * 7 6 5 9 9 N 1.34773 * 120.00371 * 359.72276 * 7 6 5 10 10 C 1.46501 * 120.00537 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.47837 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.67603 * 300.06884 * 11 10 9 13 13 C 1.53286 * 109.68611 * 179.50739 * 11 10 9 14 14 O 1.42965 * 109.22276 * 187.97327 * 13 11 10 15 15 C 1.42956 * 114.16575 * 62.58675 * 14 13 11 16 16 C 1.53718 * 109.14330 * 297.28771 * 15 14 13 17 17 N 1.47147 * 108.16347 * 52.53939 * 16 15 14 18 18 C 1.36935 * 120.98291 * 129.43379 * 17 16 15 19 19 H 1.08003 * 120.00279 * 211.11809 * 18 17 16 20 20 C 1.38814 * 119.99891 * 31.11559 * 18 17 16 21 21 N 1.31625 * 119.99770 * 196.04490 * 20 18 17 22 22 Si 1.86797 * 120.00232 * 16.04124 * 20 18 17 23 23 H 1.48500 * 109.46982 * 274.04043 * 22 20 18 24 24 H 1.48499 * 109.46903 * 34.03875 * 22 20 18 25 25 H 1.48499 * 109.47300 * 154.04256 * 22 20 18 26 26 C 1.39712 * 120.62616 * 359.47506 * 6 5 4 27 27 F 1.35102 * 120.46578 * 180.23422 * 26 6 5 28 28 C 1.38688 * 119.06912 * 0.25255 * 26 6 5 29 29 H 1.08993 * 109.47366 * 300.00133 * 1 2 3 30 30 H 1.08994 * 109.46986 * 60.00574 * 1 2 3 31 31 H 1.09004 * 109.47314 * 180.02562 * 1 2 3 32 32 H 1.08001 * 119.55923 * 0.02562 * 4 3 2 33 33 H 0.97003 * 120.00011 * 0.02562 * 9 7 6 34 34 H 1.09007 * 109.46988 * 59.99835 * 10 9 7 35 35 H 1.08998 * 109.46750 * 300.00554 * 10 9 7 36 36 H 1.08995 * 109.51704 * 307.90257 * 13 11 10 37 37 H 1.09004 * 109.50693 * 68.00095 * 13 11 10 38 38 H 1.09003 * 109.51395 * 57.33470 * 15 14 13 39 39 H 1.08996 * 109.51248 * 177.49597 * 15 14 13 40 40 H 1.08997 * 109.83810 * 292.85171 * 16 15 14 41 41 H 1.09005 * 109.74447 * 172.16867 * 16 15 14 42 42 H 0.96998 * 119.99871 * 180.02562 * 21 20 18 43 43 H 1.08005 * 120.78537 * 180.02562 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2936 2.3828 -0.0005 5 7 1.8789 3.5580 0.0040 6 6 3.2023 3.6793 -0.0010 7 6 3.8138 5.0243 -0.0010 8 8 5.0238 5.1420 -0.0006 9 7 3.0302 6.1209 -0.0016 10 6 3.6364 7.4546 -0.0022 11 6 2.5344 8.5159 -0.0021 12 1 1.9131 8.3998 -0.8901 13 6 3.1637 9.9136 0.0097 14 8 2.1368 10.8905 0.1970 15 6 1.4450 10.7809 1.4432 16 6 0.7238 9.4247 1.5018 17 7 1.7058 8.3698 1.2052 18 6 1.8406 7.2814 2.0252 19 1 2.8021 6.8012 2.1317 20 6 0.7414 6.7953 2.7196 21 7 0.9140 5.9713 3.7315 22 14 -0.9828 7.3105 2.2183 23 1 -1.3310 8.5900 2.8867 24 1 -1.0368 7.4907 0.7453 25 1 -1.9510 6.2603 2.6245 26 6 4.0208 2.5470 -0.0004 27 9 5.3658 2.6741 -0.0008 28 6 3.4332 1.2908 0.0001 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 0.2151 2.3248 -0.0005 33 1 2.0647 6.0271 -0.0016 34 1 4.2547 7.5722 -0.8922 35 1 4.2546 7.5730 0.8878 36 1 3.8840 9.9818 0.8248 37 1 3.6694 10.0931 -0.9391 38 1 2.1592 10.8521 2.2636 39 1 0.7134 11.5847 1.5254 40 1 -0.0769 9.3993 0.7627 41 1 0.3093 9.2708 2.4982 42 1 0.1458 5.6313 4.2165 43 1 4.0395 0.3969 0.0010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050949247.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:54 Heat of formation + Delta-G solvation = -77.535806 kcal Electronic energy + Delta-G solvation = -30570.363439 eV Core-core repulsion = 26146.631143 eV Total energy + Delta-G solvation = -4423.732296 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -48.84089 -40.77464 -39.37346 -38.63193 -37.73863 -35.44282 -33.65770 -32.45903 -31.68732 -31.08214 -30.32516 -27.87327 -27.47776 -25.79560 -24.32359 -23.41843 -23.05846 -22.13925 -20.31816 -19.88736 -18.64844 -17.97302 -17.65520 -16.64317 -16.32996 -16.21015 -15.99787 -15.81881 -15.53307 -15.15715 -15.00285 -14.91376 -14.56550 -14.34466 -14.05562 -13.95720 -13.52848 -13.30316 -13.11001 -13.01771 -12.58253 -12.53902 -12.24358 -12.14544 -11.86080 -11.70758 -11.52007 -11.11369 -10.76598 -10.52924 -10.34280 -9.99579 -9.80992 -9.62177 -9.58580 -9.50145 -9.21809 -8.68785 -8.61063 -8.21567 -6.99132 -6.01040 -3.44998 0.62860 0.97501 2.74012 2.99329 3.23200 3.40032 3.42419 3.54946 3.95909 4.12835 4.26291 4.31994 4.39566 4.44044 4.66353 4.75438 4.84982 4.89649 4.93416 5.22423 5.25098 5.27212 5.45268 5.53786 5.61282 5.68182 5.77244 5.80497 5.90788 5.92128 6.03171 6.13357 6.23187 6.32116 6.36480 6.52008 6.73208 6.85642 7.08081 7.60258 7.64586 7.83905 8.23195 8.27669 8.78442 8.82403 9.61157 9.97280 11.13128 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012751 B = 0.004204 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.386207 B = 6658.306839 C = 8187.499647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.306 6.306 3 C 0.123 3.877 4 C 0.013 3.987 5 N -0.376 5.376 6 C 0.024 3.976 7 C 0.568 3.432 8 O -0.547 6.547 9 N -0.670 5.670 10 C 0.135 3.865 11 C 0.127 3.873 12 H 0.047 0.953 13 C 0.055 3.945 14 O -0.388 6.388 15 C 0.046 3.954 16 C 0.090 3.910 17 N -0.607 5.607 18 C -0.266 4.266 19 H 0.096 0.904 20 C 0.034 3.966 21 N -0.901 5.901 22 Si 0.884 3.116 23 H -0.288 1.288 24 H -0.271 1.271 25 H -0.305 1.305 26 C 0.149 3.851 27 F -0.101 7.101 28 C -0.163 4.163 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.105 0.895 32 H 0.170 0.830 33 H 0.422 0.578 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.053 0.947 37 H 0.089 0.911 38 H 0.052 0.948 39 H 0.084 0.916 40 H 0.033 0.967 41 H 0.083 0.917 42 H 0.262 0.738 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.163 -6.963 -8.861 11.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.217 6.217 3 C 0.074 3.926 4 C -0.150 4.150 5 N -0.087 5.087 6 C -0.116 4.116 7 C 0.352 3.648 8 O -0.426 6.426 9 N -0.321 5.321 10 C 0.010 3.990 11 C 0.021 3.979 12 H 0.064 0.936 13 C -0.024 4.024 14 O -0.307 6.307 15 C -0.032 4.032 16 C -0.035 4.035 17 N -0.334 5.334 18 C -0.393 4.393 19 H 0.113 0.887 20 C -0.166 4.166 21 N -0.543 5.543 22 Si 0.715 3.285 23 H -0.216 1.216 24 H -0.197 1.197 25 H -0.233 1.233 26 C 0.126 3.874 27 F -0.079 7.079 28 C -0.189 4.189 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.124 0.876 32 H 0.187 0.813 33 H 0.262 0.738 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.107 0.893 38 H 0.070 0.930 39 H 0.102 0.898 40 H 0.051 0.949 41 H 0.101 0.899 42 H 0.072 0.928 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -0.788 -6.255 -8.852 10.867 hybrid contribution -1.198 -0.769 0.291 1.453 sum -1.986 -7.024 -8.561 11.250 Atomic orbital electron populations 1.23240 0.77182 1.04679 1.02344 1.86024 1.22297 1.25662 1.87676 1.19992 0.92052 0.85990 0.94528 1.23060 1.01069 0.86442 1.04390 1.67574 1.09334 1.26494 1.05318 1.21355 0.89290 0.94263 1.06687 1.17412 0.86172 0.83260 0.78004 1.90795 1.13296 1.86454 1.52021 1.45765 1.11741 1.04225 1.70370 1.21213 0.95063 0.81125 1.01558 1.21459 0.92455 0.93126 0.90884 0.93560 1.22901 0.89714 0.88626 1.01158 1.87822 1.51028 1.53350 1.38466 1.23144 0.95819 0.98286 0.85950 1.22161 0.92422 0.88317 1.00579 1.44448 1.42912 1.21766 1.24237 1.18969 0.96050 1.04960 1.19364 0.88696 1.25322 0.97426 0.96542 0.97313 1.69799 1.30285 1.34576 1.19592 0.87011 0.85921 0.76329 0.79276 1.21571 1.19663 1.23290 1.18239 0.78653 0.92810 0.97696 1.91623 1.27325 1.96445 1.92467 1.20727 0.92783 0.97552 1.07886 0.91652 0.91912 0.87619 0.81337 0.73843 0.91746 0.90841 0.92863 0.89336 0.92956 0.89823 0.94881 0.89915 0.92782 0.82331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.82 101.05 0.99 1.13 16 2 O -0.31 -3.28 10.50 -18.88 -0.20 -3.48 16 3 C 0.12 1.59 6.72 -38.87 -0.26 1.32 16 4 C 0.01 0.18 10.21 -17.37 -0.18 0.01 16 5 N -0.38 -6.70 9.52 -9.63 -0.09 -6.79 16 6 C 0.02 0.45 6.75 -82.96 -0.56 -0.11 16 7 C 0.57 11.81 7.80 -12.37 -0.10 11.71 16 8 O -0.55 -12.35 15.30 5.30 0.08 -12.26 16 9 N -0.67 -13.56 3.76 -61.28 -0.23 -13.79 16 10 C 0.13 2.51 4.45 -4.04 -0.02 2.49 16 11 C 0.13 2.38 3.21 -67.43 -0.22 2.16 16 12 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 13 C 0.05 0.90 6.29 37.31 0.23 1.14 16 14 O -0.39 -6.94 10.74 -35.23 -0.38 -7.32 16 15 C 0.05 0.81 7.00 37.53 0.26 1.08 16 16 C 0.09 1.88 4.40 -3.32 -0.01 1.87 16 17 N -0.61 -13.42 2.77 -164.05 -0.45 -13.88 16 18 C -0.27 -6.79 7.50 -15.06 -0.11 -6.90 16 19 H 0.10 2.68 6.03 -52.48 -0.32 2.36 16 20 C 0.03 0.92 5.29 -17.43 -0.09 0.83 16 21 N -0.90 -26.13 13.97 55.49 0.78 -25.35 16 22 Si 0.88 21.18 24.27 -169.99 -4.13 17.05 16 23 H -0.29 -6.70 6.42 56.52 0.36 -6.34 16 24 H -0.27 -6.42 6.79 56.52 0.38 -6.04 16 25 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 26 C 0.15 2.48 7.31 -38.86 -0.28 2.20 16 27 F -0.10 -1.78 15.54 2.25 0.03 -1.74 16 28 C -0.16 -2.18 10.10 -39.12 -0.40 -2.58 16 29 H 0.06 0.46 7.67 -51.93 -0.40 0.06 16 30 H 0.06 0.37 7.67 -51.93 -0.40 -0.03 16 31 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.17 1.89 6.31 -52.49 -0.33 1.56 16 33 H 0.42 8.95 6.63 -40.82 -0.27 8.68 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.07 1.50 7.57 -51.93 -0.39 1.11 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.03 0.70 6.89 -51.93 -0.36 0.34 16 41 H 0.08 1.85 4.85 -51.93 -0.25 1.60 16 42 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 43 H 0.16 1.69 8.06 -52.48 -0.42 1.27 16 LS Contribution 350.49 15.07 5.28 5.28 Total: -1.00 -32.44 350.49 -5.34 -37.77 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -5.29 Total: 8.17 kcal Atomic # 6 Polarization: 17.07 SS G_CDS: -0.74 Total: 16.33 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: 0.00 Total: -59.81 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.50 Total: -23.06 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.03 Total: -1.74 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.13 Total: 17.05 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.44 -5.34 -37.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050949247.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.763 kcal (2) G-P(sol) polarization free energy of solvation -32.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds