Wall clock time and date at job start Sat Apr 11 2020 05:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35722 * 116.99934 * 2 1 4 4 C 1.39357 * 120.36019 * 359.97438 * 3 2 1 5 5 N 1.31293 * 120.88593 * 180.02562 * 4 3 2 6 6 C 1.32891 * 121.71589 * 359.97438 * 5 4 3 7 7 C 1.47752 * 119.69013 * 180.02562 * 6 5 4 8 8 O 1.21571 * 120.00494 * 179.97438 * 7 6 5 9 9 N 1.34779 * 120.00004 * 359.97438 * 7 6 5 10 10 C 1.46504 * 120.00381 * 179.97438 * 9 7 6 11 11 H 1.08997 * 110.63731 * 34.29542 * 10 9 7 12 12 C 1.54326 * 110.71713 * 271.15403 * 10 9 7 13 13 N 1.47018 * 107.26868 * 219.44371 * 12 10 9 14 14 C 1.36937 * 125.64641 * 178.97997 * 13 12 10 15 15 H 1.08000 * 120.00385 * 349.93723 * 14 13 12 16 16 C 1.38814 * 120.00059 * 169.93965 * 14 13 12 17 17 N 1.31629 * 119.99997 * 350.41620 * 16 14 13 18 18 Si 1.86797 * 120.00191 * 170.42151 * 16 14 13 19 19 H 1.48501 * 109.47157 * 94.13605 * 18 16 14 20 20 H 1.48497 * 109.47318 * 214.13758 * 18 16 14 21 21 H 1.48500 * 109.46855 * 334.13913 * 18 16 14 22 22 C 1.47428 * 108.70601 * 358.93647 * 13 12 10 23 23 C 1.55121 * 104.93806 * 24.00729 * 22 13 12 24 24 H 1.09003 * 110.93956 * 81.21274 * 23 22 13 25 25 O 1.42900 * 111.16333 * 205.12630 * 23 22 13 26 26 C 1.42901 * 114.00311 * 262.17167 * 25 23 22 27 27 C 1.39727 * 120.62473 * 0.02562 * 6 5 4 28 28 F 1.35092 * 120.46341 * 180.27294 * 27 6 5 29 29 C 1.38685 * 119.06777 * 359.97438 * 27 6 5 30 30 H 1.08993 * 109.46971 * 60.00611 * 1 2 3 31 31 H 1.08998 * 109.46798 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47203 * 300.00046 * 1 2 3 33 33 H 1.08009 * 119.55974 * 0.04319 * 4 3 2 34 34 H 0.97005 * 119.99756 * 359.97438 * 9 7 6 35 35 H 1.09000 * 109.88184 * 338.86279 * 12 10 9 36 36 H 1.09002 * 109.87929 * 100.02210 * 12 10 9 37 37 H 0.96987 * 119.99743 * 180.02562 * 17 16 14 38 38 H 1.08996 * 110.36205 * 142.96896 * 22 13 12 39 39 H 1.08994 * 110.36989 * 265.29777 * 22 13 12 40 40 H 1.08993 * 109.47282 * 179.97438 * 26 25 23 41 41 H 1.09001 * 109.47044 * 300.00410 * 26 25 23 42 42 H 1.09002 * 109.47069 * 59.99668 * 26 25 23 43 43 H 1.07999 * 120.78822 * 180.02562 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2935 2.3828 -0.0005 5 7 1.8788 3.5580 -0.0010 6 6 3.2021 3.6795 -0.0006 7 6 3.8136 5.0245 -0.0006 8 8 5.0236 5.1422 0.0003 9 7 3.0300 6.1210 -0.0016 10 6 3.6362 7.4548 -0.0011 11 1 4.5630 7.4557 -0.5748 12 6 3.8869 7.9399 1.4423 13 7 3.5590 9.3724 1.4844 14 6 3.6287 10.1749 2.5918 15 1 3.7875 9.7376 3.5665 16 6 3.4953 11.5505 2.4617 17 7 3.4912 12.1012 1.2662 18 14 3.3216 12.6201 3.9833 19 1 4.6579 13.1260 4.3878 20 1 2.4282 13.7674 3.6825 21 1 2.7408 11.8170 5.0891 22 6 3.1437 9.8022 0.1367 23 6 2.6441 8.5090 -0.5592 24 1 1.6208 8.2777 -0.2631 25 8 2.7527 8.6128 -1.9803 26 6 1.5354 8.9826 -2.6309 27 6 4.0208 2.5471 0.0000 28 9 5.3657 2.6744 0.0060 29 6 3.4333 1.2909 0.0005 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.2150 2.3247 -0.0002 34 1 2.0645 6.0271 -0.0027 35 1 3.2465 7.3925 2.1339 36 1 4.9339 7.7912 1.7067 37 1 3.3983 13.0623 1.1754 38 1 2.3385 10.5337 0.2032 39 1 3.9918 10.2186 -0.4069 40 1 1.7013 9.0404 -3.7065 41 1 0.7696 8.2359 -2.4205 42 1 1.2066 9.9541 -2.2616 43 1 4.0395 0.3971 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081775895.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:08 Heat of formation + Delta-G solvation = -81.290276 kcal Electronic energy + Delta-G solvation = -29467.240287 eV Core-core repulsion = 25043.345186 eV Total energy + Delta-G solvation = -4423.895102 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -49.19288 -41.19332 -39.72372 -38.55393 -37.80459 -35.89648 -34.07500 -32.80439 -31.79698 -30.86749 -28.79466 -28.16751 -27.14368 -26.07185 -25.08084 -24.18882 -23.36395 -21.21884 -20.61140 -19.89727 -19.02279 -18.40880 -18.01365 -16.89419 -16.69527 -16.55301 -16.44402 -15.89902 -15.48630 -15.39770 -15.17131 -14.69134 -14.65163 -14.33933 -14.18378 -13.78001 -13.71070 -13.50477 -13.21578 -13.06445 -12.78519 -12.59449 -12.20183 -12.10306 -11.93534 -11.46462 -11.22046 -10.96108 -10.82718 -10.79320 -10.46416 -10.15601 -9.97836 -9.96854 -9.83201 -9.80573 -9.13532 -9.00474 -8.62583 -8.60800 -6.83750 -5.75626 -3.09958 0.20210 0.54089 2.37972 2.56227 3.09736 3.40169 3.45541 3.47719 3.48611 3.72456 3.80371 3.98710 4.12171 4.34845 4.47271 4.50692 4.55205 4.56767 4.85663 4.93811 5.14485 5.23623 5.38110 5.42908 5.50489 5.61450 5.68682 5.70174 5.82062 5.90109 5.93708 6.09621 6.20554 6.48136 6.48929 6.73244 6.89413 7.13901 7.27865 7.45700 7.69949 7.73036 7.81143 8.20778 8.32999 9.16033 9.77478 10.43014 11.36954 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015313 B = 0.002646 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.118092 B =10580.420005 C =10905.038167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.303 6.303 3 C 0.129 3.871 4 C 0.009 3.991 5 N -0.391 5.391 6 C 0.014 3.986 7 C 0.570 3.430 8 O -0.521 6.521 9 N -0.693 5.693 10 C 0.135 3.865 11 H 0.105 0.895 12 C 0.130 3.870 13 N -0.599 5.599 14 C -0.229 4.229 15 H 0.079 0.921 16 C -0.006 4.006 17 N -0.918 5.918 18 Si 0.913 3.087 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.280 1.280 22 C 0.164 3.836 23 C 0.054 3.946 24 H 0.068 0.932 25 O -0.379 6.379 26 C 0.035 3.965 27 C 0.157 3.843 28 F -0.096 7.096 29 C -0.161 4.161 30 H 0.064 0.936 31 H 0.108 0.892 32 H 0.064 0.936 33 H 0.173 0.827 34 H 0.406 0.594 35 H 0.031 0.969 36 H 0.036 0.964 37 H 0.254 0.746 38 H 0.075 0.925 39 H 0.041 0.959 40 H 0.079 0.921 41 H 0.034 0.966 42 H 0.045 0.955 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.857 -23.703 -6.186 26.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.214 6.214 3 C 0.080 3.920 4 C -0.154 4.154 5 N -0.102 5.102 6 C -0.126 4.126 7 C 0.354 3.646 8 O -0.396 6.396 9 N -0.343 5.343 10 C 0.030 3.970 11 H 0.123 0.877 12 C 0.003 3.997 13 N -0.327 5.327 14 C -0.357 4.357 15 H 0.097 0.903 16 C -0.203 4.203 17 N -0.564 5.564 18 Si 0.743 3.257 19 H -0.215 1.215 20 H -0.216 1.216 21 H -0.206 1.206 22 C 0.038 3.962 23 C -0.006 4.006 24 H 0.086 0.914 25 O -0.296 6.296 26 C -0.062 4.062 27 C 0.133 3.867 28 F -0.073 7.073 29 C -0.188 4.188 30 H 0.082 0.918 31 H 0.126 0.874 32 H 0.083 0.917 33 H 0.190 0.810 34 H 0.242 0.758 35 H 0.049 0.951 36 H 0.054 0.946 37 H 0.064 0.936 38 H 0.093 0.907 39 H 0.059 0.941 40 H 0.098 0.902 41 H 0.053 0.947 42 H 0.063 0.937 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -9.165 -22.834 -6.243 25.384 hybrid contribution -0.397 -0.118 0.849 0.944 sum -9.562 -22.951 -5.395 25.442 Atomic orbital electron populations 1.23274 0.76925 1.05035 1.02245 1.86067 1.22485 1.25463 1.87364 1.20005 0.92061 0.86102 0.93880 1.23063 1.01103 0.86408 1.04782 1.67495 1.09400 1.26844 1.06498 1.21370 0.89321 0.94264 1.07657 1.17470 0.86464 0.82988 0.77658 1.90880 1.13053 1.86076 1.49574 1.45786 1.10398 1.05182 1.72962 1.22233 0.97662 0.79161 0.97915 0.87667 1.21627 0.98582 0.87133 0.92357 1.44284 1.77953 1.03694 1.06747 1.19031 1.43590 0.87589 0.85532 0.90344 1.24855 1.02113 0.96429 0.96919 1.69949 1.55803 1.10227 1.20448 0.86098 0.77615 0.80076 0.81928 1.21514 1.21614 1.20568 1.21774 0.99351 0.90686 0.84405 1.24031 0.97828 0.98144 0.80582 0.91385 1.87865 1.32850 1.89917 1.19013 1.22710 0.86942 0.98940 0.97600 1.18241 0.78874 0.92699 0.96840 1.91663 1.27079 1.96395 1.92203 1.20826 0.92897 0.97751 1.07285 0.91751 0.87373 0.91716 0.81001 0.75792 0.95147 0.94626 0.93591 0.90674 0.94071 0.90248 0.94728 0.93672 0.81971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.06 9.82 101.05 0.99 1.05 16 2 O -0.30 -2.02 10.50 -18.87 -0.20 -2.22 16 3 C 0.13 1.06 6.72 -38.86 -0.26 0.80 16 4 C 0.01 0.08 10.21 -17.37 -0.18 -0.10 16 5 N -0.39 -4.54 9.52 -9.63 -0.09 -4.63 16 6 C 0.01 0.19 6.75 -82.96 -0.56 -0.37 16 7 C 0.57 9.77 7.80 -12.37 -0.10 9.67 16 8 O -0.52 -10.61 14.99 5.30 0.08 -10.53 16 9 N -0.69 -11.47 5.10 -53.00 -0.27 -11.74 16 10 C 0.13 2.64 3.00 -66.10 -0.20 2.44 16 11 H 0.11 2.25 7.62 -51.93 -0.40 1.86 16 12 C 0.13 2.90 7.00 -3.07 -0.02 2.88 16 13 N -0.60 -15.60 3.40 -169.94 -0.58 -16.18 16 14 C -0.23 -6.45 10.24 -15.06 -0.15 -6.61 16 15 H 0.08 2.14 7.85 -52.49 -0.41 1.73 16 16 C -0.01 -0.18 5.40 -17.43 -0.09 -0.27 16 17 N -0.92 -26.94 10.68 55.49 0.59 -26.34 16 18 Si 0.91 22.07 29.56 -169.99 -5.03 17.04 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 C 0.16 4.01 5.17 -2.41 -0.01 4.00 16 23 C 0.05 1.04 3.17 -24.47 -0.08 0.96 16 24 H 0.07 1.21 7.69 -51.93 -0.40 0.81 16 25 O -0.38 -7.02 10.52 -35.23 -0.37 -7.39 16 26 C 0.03 0.50 10.85 101.05 1.10 1.59 16 27 C 0.16 1.97 7.31 -38.86 -0.28 1.69 16 28 F -0.10 -1.39 15.54 2.25 0.03 -1.36 16 29 C -0.16 -1.51 10.10 -39.11 -0.40 -1.90 16 30 H 0.06 0.12 7.67 -51.93 -0.40 -0.28 16 31 H 0.11 0.12 8.14 -51.93 -0.42 -0.31 16 32 H 0.06 0.13 7.67 -51.93 -0.40 -0.27 16 33 H 0.17 0.85 6.31 -52.48 -0.33 0.52 16 34 H 0.41 5.87 7.86 -40.82 -0.32 5.55 16 35 H 0.03 0.66 8.03 -51.93 -0.42 0.24 16 36 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 38 H 0.08 1.99 6.93 -51.93 -0.36 1.63 16 39 H 0.04 1.12 8.07 -51.93 -0.42 0.70 16 40 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 42 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.16 1.16 8.06 -52.49 -0.42 0.73 16 LS Contribution 367.42 15.07 5.54 5.54 Total: -1.00 -34.35 367.42 -6.06 -40.40 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -5.52 Total: 1.58 kcal Atomic # 6 Polarization: 16.08 SS G_CDS: -0.24 Total: 15.83 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: -0.35 Total: -58.89 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.49 Total: -20.15 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.03 Total: -1.36 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.04 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.35 -6.06 -40.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081775895.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.888 kcal (2) G-P(sol) polarization free energy of solvation -34.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds