Wall clock time and date at job start Sat Apr 11 2020 05:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35722 * 116.99934 * 2 1 4 4 C 1.39357 * 120.36019 * 359.97438 * 3 2 1 5 5 N 1.31293 * 120.88593 * 180.02562 * 4 3 2 6 6 C 1.32891 * 121.71589 * 359.97438 * 5 4 3 7 7 C 1.47752 * 119.69013 * 180.02562 * 6 5 4 8 8 O 1.21571 * 120.00494 * 179.97438 * 7 6 5 9 9 N 1.34779 * 120.00004 * 359.97438 * 7 6 5 10 10 C 1.46504 * 120.00381 * 179.97438 * 9 7 6 11 11 H 1.08997 * 110.63731 * 34.29542 * 10 9 7 12 12 C 1.54326 * 110.71713 * 271.15403 * 10 9 7 13 13 N 1.47018 * 107.26868 * 219.44371 * 12 10 9 14 14 C 1.36937 * 125.64641 * 178.97997 * 13 12 10 15 15 H 1.08000 * 120.00385 * 349.93723 * 14 13 12 16 16 C 1.38814 * 120.00059 * 169.93965 * 14 13 12 17 17 N 1.31629 * 119.99997 * 350.41620 * 16 14 13 18 18 Si 1.86797 * 120.00191 * 170.42151 * 16 14 13 19 19 H 1.48501 * 109.47157 * 94.13605 * 18 16 14 20 20 H 1.48497 * 109.47318 * 214.13758 * 18 16 14 21 21 H 1.48500 * 109.46855 * 334.13913 * 18 16 14 22 22 C 1.47428 * 108.70601 * 358.93647 * 13 12 10 23 23 C 1.55121 * 104.93806 * 24.00729 * 22 13 12 24 24 H 1.09003 * 110.93956 * 81.21274 * 23 22 13 25 25 O 1.42900 * 111.16333 * 205.12630 * 23 22 13 26 26 C 1.42901 * 114.00311 * 262.17167 * 25 23 22 27 27 C 1.39727 * 120.62473 * 0.02562 * 6 5 4 28 28 F 1.35092 * 120.46341 * 180.27294 * 27 6 5 29 29 C 1.38685 * 119.06777 * 359.97438 * 27 6 5 30 30 H 1.08993 * 109.46971 * 60.00611 * 1 2 3 31 31 H 1.08998 * 109.46798 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47203 * 300.00046 * 1 2 3 33 33 H 1.08009 * 119.55974 * 0.04319 * 4 3 2 34 34 H 0.97005 * 119.99756 * 359.97438 * 9 7 6 35 35 H 1.09000 * 109.88184 * 338.86279 * 12 10 9 36 36 H 1.09002 * 109.87929 * 100.02210 * 12 10 9 37 37 H 0.96987 * 119.99743 * 180.02562 * 17 16 14 38 38 H 1.08996 * 110.36205 * 142.96896 * 22 13 12 39 39 H 1.08994 * 110.36989 * 265.29777 * 22 13 12 40 40 H 1.08993 * 109.47282 * 179.97438 * 26 25 23 41 41 H 1.09001 * 109.47044 * 300.00410 * 26 25 23 42 42 H 1.09002 * 109.47069 * 59.99668 * 26 25 23 43 43 H 1.07999 * 120.78822 * 180.02562 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2935 2.3828 -0.0005 5 7 1.8788 3.5580 -0.0010 6 6 3.2021 3.6795 -0.0006 7 6 3.8136 5.0245 -0.0006 8 8 5.0236 5.1422 0.0003 9 7 3.0300 6.1210 -0.0016 10 6 3.6362 7.4548 -0.0011 11 1 4.5630 7.4557 -0.5748 12 6 3.8869 7.9399 1.4423 13 7 3.5590 9.3724 1.4844 14 6 3.6287 10.1749 2.5918 15 1 3.7875 9.7376 3.5665 16 6 3.4953 11.5505 2.4617 17 7 3.4912 12.1012 1.2662 18 14 3.3216 12.6201 3.9833 19 1 4.6579 13.1260 4.3878 20 1 2.4282 13.7674 3.6825 21 1 2.7408 11.8170 5.0891 22 6 3.1437 9.8022 0.1367 23 6 2.6441 8.5090 -0.5592 24 1 1.6208 8.2777 -0.2631 25 8 2.7527 8.6128 -1.9803 26 6 1.5354 8.9826 -2.6309 27 6 4.0208 2.5471 0.0000 28 9 5.3657 2.6744 0.0060 29 6 3.4333 1.2909 0.0005 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.2150 2.3247 -0.0002 34 1 2.0645 6.0271 -0.0027 35 1 3.2465 7.3925 2.1339 36 1 4.9339 7.7912 1.7067 37 1 3.3983 13.0623 1.1754 38 1 2.3385 10.5337 0.2032 39 1 3.9918 10.2186 -0.4069 40 1 1.7013 9.0404 -3.7065 41 1 0.7696 8.2359 -2.4205 42 1 1.2066 9.9541 -2.2616 43 1 4.0395 0.3971 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081775895.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:07 Heat of formation + Delta-G solvation = -107.892379 kcal Electronic energy + Delta-G solvation = -29468.393841 eV Core-core repulsion = 25043.345186 eV Total energy + Delta-G solvation = -4425.048655 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -50.18349 -41.99003 -40.99000 -39.74497 -38.90932 -37.54057 -35.70101 -33.88824 -33.38987 -31.85782 -30.51449 -29.00953 -28.40057 -27.50788 -26.38088 -25.55883 -24.24952 -22.66410 -22.26428 -21.54787 -19.76923 -19.48117 -19.08728 -18.62668 -17.94806 -17.41203 -17.39730 -17.18940 -16.64367 -16.60810 -16.32702 -15.98073 -15.83386 -15.73916 -15.57037 -15.17667 -14.94528 -14.63429 -14.37875 -14.25962 -13.99174 -13.87594 -13.81193 -13.13095 -13.02065 -12.92135 -12.73940 -12.62625 -12.50147 -12.36941 -12.06702 -11.89110 -11.70538 -11.49314 -10.92636 -10.77228 -10.74879 -10.60109 -10.21158 -9.70960 -8.95571 -7.90854 -5.29455 -0.67518 -0.20822 1.46870 1.48675 1.50667 1.58761 1.75119 1.93037 2.44360 2.48750 2.71080 2.86393 2.94426 3.28604 3.33688 3.47386 3.55653 3.72829 3.79743 3.93066 3.98569 4.02818 4.31317 4.41536 4.42320 4.43818 4.45214 4.59455 4.64008 4.69273 4.82391 4.84080 4.87115 4.88665 5.12274 5.26177 5.34386 5.41857 5.59958 5.96864 6.10652 6.22099 6.28098 6.51015 7.00692 7.03848 7.66379 8.31968 9.20391 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015313 B = 0.002646 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.118092 B =10580.420005 C =10905.038167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.306 6.306 3 C 0.150 3.850 4 C 0.022 3.978 5 N -0.399 5.399 6 C -0.015 4.015 7 C 0.568 3.432 8 O -0.564 6.564 9 N -0.682 5.682 10 C 0.151 3.849 11 H 0.082 0.918 12 C 0.132 3.868 13 N -0.616 5.616 14 C -0.250 4.250 15 H 0.082 0.918 16 C -0.059 4.059 17 N -0.947 5.947 18 Si 0.983 3.017 19 H -0.288 1.288 20 H -0.289 1.289 21 H -0.266 1.266 22 C 0.172 3.828 23 C 0.078 3.922 24 H 0.094 0.906 25 O -0.396 6.396 26 C 0.026 3.974 27 C 0.141 3.859 28 F -0.116 7.116 29 C -0.158 4.158 30 H 0.080 0.920 31 H 0.128 0.872 32 H 0.078 0.922 33 H 0.213 0.787 34 H 0.419 0.581 35 H 0.043 0.957 36 H 0.016 0.984 37 H 0.251 0.749 38 H 0.051 0.949 39 H 0.001 0.999 40 H 0.103 0.897 41 H 0.062 0.938 42 H 0.038 0.962 43 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.964 -26.343 -6.034 29.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.216 6.216 3 C 0.099 3.901 4 C -0.143 4.143 5 N -0.111 5.111 6 C -0.152 4.152 7 C 0.355 3.645 8 O -0.442 6.442 9 N -0.333 5.333 10 C 0.045 3.955 11 H 0.100 0.900 12 C 0.005 3.995 13 N -0.344 5.344 14 C -0.378 4.378 15 H 0.100 0.900 16 C -0.253 4.253 17 N -0.595 5.595 18 Si 0.811 3.189 19 H -0.215 1.215 20 H -0.215 1.215 21 H -0.191 1.191 22 C 0.046 3.954 23 C 0.019 3.981 24 H 0.112 0.888 25 O -0.314 6.314 26 C -0.070 4.070 27 C 0.118 3.882 28 F -0.094 7.094 29 C -0.184 4.184 30 H 0.098 0.902 31 H 0.146 0.854 32 H 0.097 0.903 33 H 0.230 0.770 34 H 0.258 0.742 35 H 0.061 0.939 36 H 0.034 0.966 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.019 0.981 40 H 0.122 0.878 41 H 0.080 0.920 42 H 0.056 0.944 43 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -12.301 -25.512 -6.099 28.972 hybrid contribution 0.430 0.502 0.752 1.001 sum -11.871 -25.011 -5.347 28.197 Atomic orbital electron populations 1.23699 0.74496 1.06996 1.03692 1.86102 1.24887 1.24298 1.86332 1.20023 0.91650 0.86892 0.91513 1.23719 1.02798 0.85328 1.02434 1.67454 1.08084 1.28521 1.06997 1.20780 0.90529 0.92436 1.11485 1.17994 0.86012 0.84266 0.76254 1.90846 1.14997 1.86940 1.51449 1.45536 1.10945 1.03825 1.73014 1.21738 0.97185 0.80954 0.95651 0.89955 1.21666 0.97536 0.85654 0.94601 1.44544 1.78126 1.04950 1.06814 1.19410 1.43587 0.88387 0.86427 0.90045 1.25735 1.01971 0.97632 0.99975 1.70154 1.56591 1.10192 1.22525 0.85011 0.77318 0.78047 0.78568 1.21509 1.21463 1.19088 1.21525 0.97028 0.92767 0.84114 1.23606 0.98531 0.94818 0.81174 0.88805 1.87855 1.35576 1.89905 1.18049 1.23013 0.86040 0.99379 0.98555 1.18448 0.78054 0.93707 0.98040 1.91606 1.28608 1.96593 1.92622 1.20991 0.93902 0.97017 1.06537 0.90164 0.85416 0.90303 0.77018 0.74243 0.93924 0.96637 0.93955 0.93023 0.98122 0.87838 0.91975 0.94360 0.79924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 9.82 113.37 1.11 1.12 16 2 O -0.31 -2.79 10.50 -90.44 -0.95 -3.74 16 3 C 0.15 1.95 6.72 22.73 0.15 2.10 16 4 C 0.02 0.28 10.21 85.04 0.87 1.15 16 5 N -0.40 -8.38 9.52 -184.38 -1.76 -10.13 16 6 C -0.02 -0.42 6.75 41.86 0.28 -0.13 16 7 C 0.57 19.93 7.80 86.76 0.68 20.61 16 8 O -0.56 -24.22 14.99 -3.94 -0.06 -24.28 16 9 N -0.68 -22.60 5.10 -439.86 -2.25 -24.84 16 10 C 0.15 6.08 3.00 46.18 0.14 6.22 16 11 H 0.08 3.73 7.62 -2.39 -0.02 3.71 16 12 C 0.13 6.11 7.00 86.73 0.61 6.72 16 13 N -0.62 -33.27 3.40 -691.57 -2.35 -35.62 16 14 C -0.25 -14.39 10.24 84.03 0.86 -13.53 16 15 H 0.08 4.52 7.85 -2.91 -0.02 4.49 16 16 C -0.06 -3.42 5.40 84.86 0.46 -2.96 16 17 N -0.95 -57.42 10.68 21.65 0.23 -57.19 16 18 Si 0.98 45.93 29.56 68.60 2.03 47.96 16 19 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 20 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 22 C 0.17 8.79 5.17 86.93 0.45 9.24 16 23 C 0.08 3.07 3.17 32.06 0.10 3.18 16 24 H 0.09 3.21 7.69 -2.39 -0.02 3.19 16 25 O -0.40 -14.61 10.52 -148.98 -1.57 -16.18 16 26 C 0.03 0.70 10.85 113.37 1.23 1.93 16 27 C 0.14 3.52 7.31 22.74 0.17 3.68 16 28 F -0.12 -3.53 15.54 44.97 0.70 -2.83 16 29 C -0.16 -2.65 10.10 22.57 0.23 -2.43 16 30 H 0.08 -0.13 7.67 -2.39 -0.02 -0.15 16 31 H 0.13 -0.33 8.14 -2.39 -0.02 -0.35 16 32 H 0.08 -0.10 7.67 -2.39 -0.02 -0.12 16 33 H 0.21 0.92 6.31 -2.91 -0.02 0.90 16 34 H 0.42 11.57 7.86 -92.70 -0.73 10.84 16 35 H 0.04 1.87 8.03 -2.39 -0.02 1.85 16 36 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.25 14.68 8.31 -92.72 -0.77 13.91 16 38 H 0.05 2.85 6.93 -2.39 -0.02 2.83 16 39 H 0.00 0.04 8.07 -2.39 -0.02 0.02 16 40 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.06 1.34 8.12 -2.39 -0.02 1.32 16 42 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.18 2.19 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -79.28 367.42 1.70 -77.58 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: 0.33 Total: 12.39 kcal Atomic # 6 Polarization: 29.55 SS G_CDS: 7.33 Total: 36.89 kcal Atomic # 7 Polarization: -121.67 SS G_CDS: -6.12 Total: -127.79 kcal Atomic # 8 Polarization: -41.62 SS G_CDS: -2.58 Total: -44.20 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.70 Total: -2.83 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -79.28 1.70 -77.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081775895.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.311 kcal (2) G-P(sol) polarization free energy of solvation -79.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds