Wall clock time and date at job start Sat Apr 11 2020 05:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99972 * 2 1 4 4 H 1.09002 * 109.47382 * 330.00104 * 3 2 1 5 5 C 1.53000 * 109.46726 * 90.00358 * 3 2 1 6 6 C 1.50699 * 109.47184 * 210.00106 * 3 2 1 7 7 N 1.29433 * 124.80372 * 314.70189 * 6 3 2 8 8 C 1.30942 * 117.36227 * 179.76944 * 7 6 3 9 9 C 1.35659 * 114.19482 * 0.51189 * 8 7 6 10 10 C 1.46683 * 126.13551 * 179.75367 * 9 8 7 11 11 O 1.21684 * 120.00305 * 179.97438 * 10 9 8 12 12 N 1.34769 * 119.99543 * 359.97438 * 10 9 8 13 13 C 1.46503 * 119.99652 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.46864 * 179.97438 * 13 12 10 15 15 H 1.08997 * 112.85124 * 314.65953 * 14 13 12 16 16 C 1.53778 * 113.61858 * 85.86234 * 14 13 12 17 17 C 1.53948 * 87.02188 * 139.94968 * 16 14 13 18 18 H 1.09004 * 113.53875 * 89.18772 * 17 16 14 19 19 N 1.46501 * 113.74149 * 220.05423 * 17 16 14 20 20 C 1.36931 * 120.00075 * 252.59542 * 19 17 16 21 21 H 1.08001 * 120.00690 * 0.02562 * 20 19 17 22 22 C 1.38818 * 120.00050 * 180.02562 * 20 19 17 23 23 N 1.31621 * 119.99965 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00176 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.46939 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.46966 * 119.99745 * 24 22 20 27 27 H 1.48500 * 109.47027 * 240.00143 * 24 22 20 28 28 C 1.53781 * 113.61134 * 183.47032 * 14 13 12 29 29 S 1.70951 * 124.80685 * 135.00185 * 6 3 2 30 30 H 1.09003 * 109.47264 * 59.99735 * 1 2 3 31 31 H 1.08994 * 109.47245 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46765 * 300.00001 * 1 2 3 33 33 H 1.09001 * 109.47194 * 299.99575 * 5 3 2 34 34 H 1.08992 * 109.47399 * 59.99748 * 5 3 2 35 35 H 1.09004 * 109.46724 * 180.02562 * 5 3 2 36 36 H 1.08002 * 122.90191 * 180.25191 * 8 7 6 37 37 H 0.97004 * 120.00421 * 359.97438 * 12 10 9 38 38 H 1.09002 * 109.46737 * 299.99023 * 13 12 10 39 39 H 1.08990 * 109.47596 * 59.99722 * 13 12 10 40 40 H 1.09001 * 113.61207 * 254.53065 * 16 14 13 41 41 H 1.09001 * 113.61215 * 25.42655 * 16 14 13 42 42 H 0.97006 * 120.00134 * 72.60092 * 19 17 16 43 43 H 0.97002 * 119.99741 * 179.97438 * 23 22 20 44 44 H 1.09002 * 113.61888 * 334.56210 * 28 14 13 45 45 H 1.08998 * 113.61948 * 105.38771 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2177 1.7713 1.4425 6 6 3.3386 1.2639 -0.7104 7 7 4.2454 0.3583 -0.5291 8 6 5.3472 0.4612 -1.2291 9 6 5.3823 1.5362 -2.0558 10 6 6.4859 1.9047 -2.9491 11 8 6.3984 2.8979 -3.6466 12 7 7.5967 1.1431 -2.9974 13 6 8.6991 1.5114 -3.8892 14 6 9.8294 0.4893 -3.7518 15 1 10.0540 0.2435 -2.7140 16 6 9.6574 -0.7443 -4.6537 17 6 11.1735 -0.6684 -4.9102 18 1 11.7657 -1.2322 -4.1893 19 7 11.5516 -0.9461 -6.2981 20 6 12.1664 -2.1273 -6.6170 21 1 12.3723 -2.8546 -5.8456 22 6 12.5251 -2.3901 -7.9320 23 7 12.2738 -1.5041 -8.8724 24 14 13.3632 -4.0019 -8.3673 25 1 13.5307 -4.8201 -7.1393 26 1 12.5302 -4.7440 -9.3474 27 1 14.6954 -3.7225 -8.9609 28 6 11.0744 0.8318 -4.5870 29 16 3.8643 2.4103 -1.8645 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.2569 1.8014 1.9564 34 1 2.8829 1.0774 1.9563 35 1 2.6606 2.7673 1.4425 36 1 6.1596 -0.2462 -1.1517 37 1 7.6666 0.3514 -2.4411 38 1 8.3439 1.5245 -4.9196 39 1 9.0695 2.5004 -3.6198 40 1 9.3492 -1.6400 -4.1144 41 1 9.0543 -0.5552 -5.5418 42 1 11.3665 -0.2930 -6.9911 43 1 12.5248 -1.6877 -9.7912 44 1 10.8595 1.4526 -5.4568 45 1 11.9080 1.2080 -3.9940 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086086940.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:15 Heat of formation + Delta-G solvation = -4.767321 kcal Electronic energy + Delta-G solvation = -25585.101445 eV Core-core repulsion = 21730.737804 eV Total energy + Delta-G solvation = -3854.363641 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.57300 -39.63603 -38.57301 -38.26741 -34.81421 -33.40354 -32.95120 -30.74266 -29.96121 -27.55528 -27.09943 -26.20511 -25.11723 -23.92007 -23.40793 -21.94027 -21.13315 -19.95394 -19.07349 -18.72989 -17.72986 -17.04608 -16.67542 -16.28963 -15.91588 -15.70457 -15.57791 -15.03322 -14.81638 -14.59325 -14.40261 -14.02402 -13.69552 -13.58201 -13.33566 -13.18152 -12.94221 -12.83337 -12.24622 -12.03428 -11.89673 -11.83693 -11.56936 -11.43884 -11.26123 -10.87675 -10.76730 -10.51174 -10.35299 -10.16355 -10.08568 -9.87959 -9.85373 -9.80240 -9.53206 -9.40901 -9.11470 -8.88598 -6.97586 -5.79502 -3.08386 -0.17987 0.67465 1.22684 2.09741 2.93730 3.04340 3.27288 3.41913 3.47529 3.49852 3.53913 4.17551 4.44621 4.48785 4.57277 4.60747 4.78946 4.79839 4.86428 4.92853 4.96885 5.06494 5.18537 5.19149 5.21523 5.44758 5.46626 5.54193 5.65935 5.76676 5.80093 5.89707 6.07074 6.16479 6.27307 6.32521 6.38485 6.53675 6.56951 6.79581 7.08860 7.22689 7.26761 7.68678 7.94190 8.38993 9.50210 10.08346 10.42392 11.42878 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020771 B = 0.001745 C = 0.001676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.679416 B =16041.499347 C =16705.966874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.166 3.834 4 H 0.083 0.917 5 C -0.168 4.168 6 C 0.031 3.969 7 N -0.450 5.450 8 C 0.091 3.909 9 C -0.288 4.288 10 C 0.591 3.409 11 O -0.536 6.536 12 N -0.710 5.710 13 C 0.133 3.867 14 C -0.128 4.128 15 H 0.089 0.911 16 C -0.162 4.162 17 C 0.166 3.834 18 H 0.076 0.924 19 N -0.712 5.712 20 C -0.244 4.244 21 H 0.072 0.928 22 C -0.013 4.013 23 N -0.932 5.932 24 Si 0.907 3.093 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C -0.141 4.141 29 S 0.239 5.761 30 H 0.044 0.956 31 H 0.091 0.909 32 H 0.045 0.955 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.184 0.816 37 H 0.401 0.599 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.054 0.946 41 H 0.078 0.922 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.081 0.919 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.163 9.001 22.124 33.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.282 6.282 3 C 0.104 3.896 4 H 0.101 0.899 5 C -0.227 4.227 6 C -0.244 4.244 7 N -0.164 5.164 8 C -0.068 4.068 9 C -0.412 4.412 10 C 0.375 3.625 11 O -0.414 6.414 12 N -0.360 5.360 13 C 0.010 3.990 14 C -0.147 4.147 15 H 0.108 0.892 16 C -0.203 4.203 17 C 0.054 3.946 18 H 0.094 0.906 19 N -0.350 5.350 20 C -0.375 4.375 21 H 0.090 0.910 22 C -0.210 4.210 23 N -0.580 5.580 24 Si 0.738 3.262 25 H -0.205 1.205 26 H -0.219 1.219 27 H -0.218 1.218 28 C -0.181 4.181 29 S 0.498 5.502 30 H 0.063 0.937 31 H 0.110 0.890 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.201 0.799 37 H 0.236 0.764 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.097 0.903 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.099 0.901 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -23.576 9.883 21.500 33.403 hybrid contribution 0.934 -1.572 -0.227 1.843 sum -22.642 8.311 21.274 32.160 Atomic orbital electron populations 1.22907 0.80457 1.03473 1.00177 1.88101 1.19759 1.25451 1.94920 1.20483 0.87292 0.86495 0.95336 0.89912 1.22268 1.03455 1.02230 0.94753 1.27359 1.00366 0.96279 1.00399 1.66038 1.00749 1.25362 1.24223 1.22272 0.96206 0.96246 0.92034 1.25899 1.02307 1.03676 1.09362 1.16683 0.81172 0.83292 0.81341 1.90862 1.80730 1.26451 1.43385 1.45804 1.16739 1.28947 1.44551 1.21538 0.85167 0.98411 0.93856 1.22657 0.95458 0.97074 0.99549 0.89249 1.23989 1.02521 0.95410 0.98397 1.21546 0.92170 0.92400 0.88512 0.90640 1.42415 1.69934 1.20053 1.02618 1.19353 1.30621 0.94739 0.92830 0.91017 1.24778 1.01853 0.98386 0.95935 1.69673 1.52721 1.34938 1.00626 0.86118 0.78909 0.83141 0.78018 1.20523 1.21857 1.21843 1.23444 0.95481 1.00147 0.99045 1.84029 1.07294 1.25415 1.33487 0.93715 0.89006 0.93633 0.91078 0.90519 0.91090 0.79940 0.76386 0.90793 0.91343 0.92683 0.90308 0.78060 0.93494 0.90056 0.91909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 10.82 101.05 1.09 1.22 16 2 O -0.36 -3.15 10.32 -35.23 -0.36 -3.51 16 3 C 0.17 1.17 3.23 -27.88 -0.09 1.08 16 4 H 0.08 0.38 7.78 -51.93 -0.40 -0.03 16 5 C -0.17 -0.93 9.51 37.16 0.35 -0.57 16 6 C 0.03 0.29 6.28 -13.29 -0.08 0.21 16 7 N -0.45 -4.90 10.49 -11.50 -0.12 -5.02 16 8 C 0.09 0.90 10.93 -18.85 -0.21 0.69 16 9 C -0.29 -3.15 6.48 -37.10 -0.24 -3.39 16 10 C 0.59 7.68 7.79 -12.85 -0.10 7.58 16 11 O -0.54 -8.86 16.96 5.20 0.09 -8.77 16 12 N -0.71 -7.92 5.54 -61.62 -0.34 -8.26 16 13 C 0.13 1.68 5.50 -4.04 -0.02 1.66 16 14 C -0.13 -1.63 3.75 -89.81 -0.34 -1.97 16 15 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 16 C -0.16 -2.60 7.45 -25.83 -0.19 -2.79 16 17 C 0.17 3.14 4.48 -67.03 -0.30 2.84 16 18 H 0.08 1.42 8.10 -51.93 -0.42 1.00 16 19 N -0.71 -17.62 5.41 -52.55 -0.28 -17.91 16 20 C -0.24 -6.73 9.97 -15.06 -0.15 -6.88 16 21 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 22 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 23 N -0.93 -28.12 13.06 55.49 0.72 -27.40 16 24 Si 0.91 22.31 29.55 -169.99 -5.02 17.28 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 28 C -0.14 -2.18 7.40 -25.92 -0.19 -2.37 16 29 S 0.24 2.21 23.01 -107.50 -2.47 -0.26 16 30 H 0.04 0.17 8.09 -51.93 -0.42 -0.25 16 31 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.15 7.87 -51.93 -0.41 -0.26 16 33 H 0.07 0.27 7.87 -51.93 -0.41 -0.14 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.18 1.29 7.15 -52.49 -0.38 0.92 16 37 H 0.40 3.43 7.18 -40.82 -0.29 3.13 16 38 H 0.07 1.07 7.88 -51.93 -0.41 0.66 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.08 1.41 7.92 -51.93 -0.41 1.00 16 42 H 0.39 10.17 7.92 -40.82 -0.32 9.85 16 43 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.08 1.32 8.08 -51.93 -0.42 0.90 16 45 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 393.70 15.07 5.93 5.93 Total: -1.00 -34.50 393.70 -9.22 -43.73 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -6.80 Total: 7.37 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -0.56 Total: -3.18 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: -0.02 Total: -58.59 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: -0.28 Total: -12.28 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -2.47 Total: -0.26 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.50 -9.22 -43.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086086940.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.958 kcal (2) G-P(sol) polarization free energy of solvation -34.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds