Wall clock time and date at job start Sat Apr 11 2020 05:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99972 * 2 1 4 4 H 1.09002 * 109.47382 * 330.00104 * 3 2 1 5 5 C 1.53000 * 109.46726 * 90.00358 * 3 2 1 6 6 C 1.50699 * 109.47184 * 210.00106 * 3 2 1 7 7 N 1.29433 * 124.80372 * 314.70189 * 6 3 2 8 8 C 1.30942 * 117.36227 * 179.76944 * 7 6 3 9 9 C 1.35659 * 114.19482 * 0.51189 * 8 7 6 10 10 C 1.46683 * 126.13551 * 179.75367 * 9 8 7 11 11 O 1.21684 * 120.00305 * 179.97438 * 10 9 8 12 12 N 1.34769 * 119.99543 * 359.97438 * 10 9 8 13 13 C 1.46503 * 119.99652 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.46864 * 179.97438 * 13 12 10 15 15 H 1.08997 * 112.85124 * 314.65953 * 14 13 12 16 16 C 1.53778 * 113.61858 * 85.86234 * 14 13 12 17 17 C 1.53948 * 87.02188 * 139.94968 * 16 14 13 18 18 H 1.09004 * 113.53875 * 89.18772 * 17 16 14 19 19 N 1.46501 * 113.74149 * 220.05423 * 17 16 14 20 20 C 1.36931 * 120.00075 * 252.59542 * 19 17 16 21 21 H 1.08001 * 120.00690 * 0.02562 * 20 19 17 22 22 C 1.38818 * 120.00050 * 180.02562 * 20 19 17 23 23 N 1.31621 * 119.99965 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00176 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.46939 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.46966 * 119.99745 * 24 22 20 27 27 H 1.48500 * 109.47027 * 240.00143 * 24 22 20 28 28 C 1.53781 * 113.61134 * 183.47032 * 14 13 12 29 29 S 1.70951 * 124.80685 * 135.00185 * 6 3 2 30 30 H 1.09003 * 109.47264 * 59.99735 * 1 2 3 31 31 H 1.08994 * 109.47245 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46765 * 300.00001 * 1 2 3 33 33 H 1.09001 * 109.47194 * 299.99575 * 5 3 2 34 34 H 1.08992 * 109.47399 * 59.99748 * 5 3 2 35 35 H 1.09004 * 109.46724 * 180.02562 * 5 3 2 36 36 H 1.08002 * 122.90191 * 180.25191 * 8 7 6 37 37 H 0.97004 * 120.00421 * 359.97438 * 12 10 9 38 38 H 1.09002 * 109.46737 * 299.99023 * 13 12 10 39 39 H 1.08990 * 109.47596 * 59.99722 * 13 12 10 40 40 H 1.09001 * 113.61207 * 254.53065 * 16 14 13 41 41 H 1.09001 * 113.61215 * 25.42655 * 16 14 13 42 42 H 0.97006 * 120.00134 * 72.60092 * 19 17 16 43 43 H 0.97002 * 119.99741 * 179.97438 * 23 22 20 44 44 H 1.09002 * 113.61888 * 334.56210 * 28 14 13 45 45 H 1.08998 * 113.61948 * 105.38771 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2177 1.7713 1.4425 6 6 3.3386 1.2639 -0.7104 7 7 4.2454 0.3583 -0.5291 8 6 5.3472 0.4612 -1.2291 9 6 5.3823 1.5362 -2.0558 10 6 6.4859 1.9047 -2.9491 11 8 6.3984 2.8979 -3.6466 12 7 7.5967 1.1431 -2.9974 13 6 8.6991 1.5114 -3.8892 14 6 9.8294 0.4893 -3.7518 15 1 10.0540 0.2435 -2.7140 16 6 9.6574 -0.7443 -4.6537 17 6 11.1735 -0.6684 -4.9102 18 1 11.7657 -1.2322 -4.1893 19 7 11.5516 -0.9461 -6.2981 20 6 12.1664 -2.1273 -6.6170 21 1 12.3723 -2.8546 -5.8456 22 6 12.5251 -2.3901 -7.9320 23 7 12.2738 -1.5041 -8.8724 24 14 13.3632 -4.0019 -8.3673 25 1 13.5307 -4.8201 -7.1393 26 1 12.5302 -4.7440 -9.3474 27 1 14.6954 -3.7225 -8.9609 28 6 11.0744 0.8318 -4.5870 29 16 3.8643 2.4103 -1.8645 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.2569 1.8014 1.9564 34 1 2.8829 1.0774 1.9563 35 1 2.6606 2.7673 1.4425 36 1 6.1596 -0.2462 -1.1517 37 1 7.6666 0.3514 -2.4411 38 1 8.3439 1.5245 -4.9196 39 1 9.0695 2.5004 -3.6198 40 1 9.3492 -1.6400 -4.1144 41 1 9.0543 -0.5552 -5.5418 42 1 11.3665 -0.2930 -6.9911 43 1 12.5248 -1.6877 -9.7912 44 1 10.8595 1.4526 -5.4568 45 1 11.9080 1.2080 -3.9940 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086086940.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:14 Heat of formation + Delta-G solvation = -30.008655 kcal Electronic energy + Delta-G solvation = -25586.195992 eV Core-core repulsion = 21730.737804 eV Total energy + Delta-G solvation = -3855.458188 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.40701 -40.58122 -39.73145 -38.95489 -36.12149 -35.09103 -33.59763 -32.26280 -31.10868 -28.52833 -27.69904 -26.93287 -26.44968 -25.76869 -24.08361 -22.91148 -22.36043 -20.96092 -20.29264 -19.49947 -19.04148 -18.49617 -17.33466 -17.17431 -16.70469 -16.60238 -16.49650 -16.30049 -16.04692 -15.63779 -15.32348 -15.23631 -15.03249 -14.77081 -14.35717 -14.14236 -13.60762 -13.43874 -13.27107 -13.22249 -13.04782 -12.93607 -12.72318 -12.67791 -12.61655 -12.17632 -12.06072 -12.00446 -11.78728 -11.55643 -11.40746 -11.06845 -10.90218 -10.81329 -10.69547 -10.53214 -10.24931 -10.00668 -8.96958 -7.94525 -5.22543 -0.94074 -0.04735 0.49984 1.29737 1.47514 1.48007 1.58075 2.02772 2.10818 2.56818 2.76992 2.95800 3.37568 3.59560 3.68523 3.74377 3.75419 3.92072 4.01505 4.03597 4.10078 4.26602 4.35968 4.42076 4.47931 4.55506 4.56917 4.67264 4.74744 4.79408 4.88756 4.91932 4.98067 5.00151 5.05240 5.20821 5.22718 5.29594 5.41377 5.53203 5.73737 6.09661 6.28105 6.34369 6.53233 7.01003 7.33588 8.12458 8.33661 9.29167 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020771 B = 0.001745 C = 0.001676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.679416 B =16041.499347 C =16705.966874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.395 6.395 3 C 0.158 3.842 4 H 0.109 0.891 5 C -0.164 4.164 6 C 0.039 3.961 7 N -0.478 5.478 8 C 0.105 3.895 9 C -0.316 4.316 10 C 0.592 3.408 11 O -0.579 6.579 12 N -0.697 5.697 13 C 0.139 3.861 14 C -0.095 4.095 15 H 0.124 0.876 16 C -0.155 4.155 17 C 0.142 3.858 18 H 0.081 0.919 19 N -0.730 5.730 20 C -0.241 4.241 21 H 0.080 0.920 22 C -0.081 4.081 23 N -0.972 5.972 24 Si 0.972 3.028 25 H -0.263 1.263 26 H -0.296 1.296 27 H -0.295 1.295 28 C -0.135 4.135 29 S 0.253 5.747 30 H 0.054 0.946 31 H 0.094 0.906 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.057 0.943 35 H 0.081 0.919 36 H 0.207 0.793 37 H 0.416 0.584 38 H 0.051 0.949 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.055 0.945 42 H 0.372 0.628 43 H 0.250 0.750 44 H 0.067 0.933 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.166 8.588 24.776 35.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.314 6.314 3 C 0.097 3.903 4 H 0.126 0.874 5 C -0.223 4.223 6 C -0.236 4.236 7 N -0.193 5.193 8 C -0.055 4.055 9 C -0.441 4.441 10 C 0.378 3.622 11 O -0.461 6.461 12 N -0.349 5.349 13 C 0.015 3.985 14 C -0.114 4.114 15 H 0.142 0.858 16 C -0.196 4.196 17 C 0.032 3.968 18 H 0.099 0.901 19 N -0.367 5.367 20 C -0.373 4.373 21 H 0.098 0.902 22 C -0.272 4.272 23 N -0.623 5.623 24 Si 0.802 3.198 25 H -0.187 1.187 26 H -0.224 1.224 27 H -0.222 1.222 28 C -0.175 4.175 29 S 0.512 5.488 30 H 0.073 0.927 31 H 0.113 0.887 32 H 0.081 0.919 33 H 0.109 0.891 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.224 0.776 37 H 0.254 0.746 38 H 0.070 0.930 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.203 0.797 43 H 0.058 0.942 44 H 0.086 0.914 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -24.597 9.448 24.240 35.803 hybrid contribution 1.142 -1.431 -0.938 2.058 sum -23.455 8.017 23.302 34.020 Atomic orbital electron populations 1.23096 0.78740 1.04194 1.01554 1.88051 1.21755 1.26410 1.95142 1.20791 0.86609 0.86695 0.96242 0.87356 1.22253 1.04217 1.02129 0.93675 1.27907 1.00847 0.95400 0.99415 1.66135 1.01486 1.26392 1.25266 1.22638 0.96385 0.95823 0.90653 1.25728 1.02713 1.05141 1.10498 1.16908 0.81679 0.82663 0.80930 1.90837 1.81611 1.28369 1.45287 1.45637 1.15930 1.29199 1.44112 1.21342 0.85435 0.98613 0.93070 1.22483 0.93836 0.94776 1.00321 0.85764 1.23766 0.99524 0.97755 0.98519 1.22004 0.93884 0.95062 0.85804 0.90061 1.42639 1.70295 1.19091 1.04694 1.19783 1.28990 0.95532 0.92951 0.90227 1.25595 1.03716 1.01773 0.96160 1.69833 1.54869 1.36982 1.00618 0.85081 0.77314 0.79494 0.77934 1.18749 1.22376 1.22192 1.23318 0.97527 0.97308 0.99334 1.83953 1.06547 1.25142 1.33157 0.92690 0.88732 0.91867 0.89128 0.92378 0.90042 0.77612 0.74596 0.93044 0.90908 0.91273 0.92644 0.79663 0.94160 0.91427 0.90141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 10.82 113.37 1.23 1.38 16 2 O -0.39 -6.22 10.32 -148.98 -1.54 -7.76 16 3 C 0.16 1.93 3.23 29.85 0.10 2.02 16 4 H 0.11 0.72 7.78 -2.39 -0.02 0.70 16 5 C -0.16 -1.48 9.51 71.98 0.68 -0.80 16 6 C 0.04 0.67 6.28 88.46 0.56 1.22 16 7 N -0.48 -9.76 10.49 -190.30 -2.00 -11.76 16 8 C 0.10 1.88 10.93 84.23 0.92 2.80 16 9 C -0.32 -6.59 6.48 23.88 0.15 -6.43 16 10 C 0.59 14.94 7.79 86.45 0.67 15.62 16 11 O -0.58 -19.24 16.96 -4.30 -0.07 -19.31 16 12 N -0.70 -14.35 5.54 -467.09 -2.59 -16.94 16 13 C 0.14 3.32 5.50 86.38 0.47 3.79 16 14 C -0.10 -2.19 3.75 -10.27 -0.04 -2.23 16 15 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 16 C -0.15 -4.77 7.45 31.18 0.23 -4.53 16 17 C 0.14 5.24 4.48 45.58 0.20 5.44 16 18 H 0.08 2.90 8.10 -2.39 -0.02 2.88 16 19 N -0.73 -36.50 5.41 -320.16 -1.73 -38.24 16 20 C -0.24 -13.28 9.97 84.04 0.84 -12.44 16 21 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 22 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 23 N -0.97 -60.22 13.06 21.65 0.28 -59.94 16 24 Si 0.97 46.28 29.55 68.60 2.03 48.31 16 25 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 26 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 27 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 28 C -0.14 -3.98 7.40 31.12 0.23 -3.75 16 29 S 0.25 4.42 23.01 -56.49 -1.30 3.12 16 30 H 0.05 0.30 8.09 -2.39 -0.02 0.28 16 31 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.25 7.87 -2.39 -0.02 0.24 16 33 H 0.09 0.46 7.87 -2.39 -0.02 0.44 16 34 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16 35 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.21 2.39 7.15 -2.91 -0.02 2.37 16 37 H 0.42 5.93 7.18 -92.71 -0.67 5.26 16 38 H 0.05 1.49 7.88 -2.39 -0.02 1.47 16 39 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.05 1.99 7.92 -2.39 -0.02 1.97 16 42 H 0.37 20.26 7.92 -92.70 -0.73 19.52 16 43 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 44 H 0.07 2.20 8.08 -2.39 -0.02 2.18 16 45 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -76.39 393.70 -0.58 -76.97 By element: Atomic # 1 Polarization: 28.02 SS G_CDS: -0.38 Total: 27.64 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: 6.72 Total: -2.09 kcal Atomic # 7 Polarization: -120.84 SS G_CDS: -6.03 Total: -126.87 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -1.61 Total: -27.07 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Atomic # 16 Polarization: 4.42 SS G_CDS: -1.30 Total: 3.12 kcal Total: -76.39 -0.58 -76.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086086940.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.963 kcal (2) G-P(sol) polarization free energy of solvation -76.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds