Wall clock time and date at job start Sat Apr 11 2020 05:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42901 * 113.99979 * 2 1 4 4 H 1.08995 * 109.47513 * 329.99627 * 3 2 1 5 5 C 1.53001 * 109.47458 * 89.99782 * 3 2 1 6 6 C 1.50705 * 109.47245 * 209.99506 * 3 2 1 7 7 N 1.29428 * 124.80628 * 314.98194 * 6 3 2 8 8 C 1.30944 * 117.36307 * 180.02562 * 7 6 3 9 9 C 1.35655 * 114.19124 * 0.26698 * 8 7 6 10 10 C 1.46687 * 126.12941 * 179.72655 * 9 8 7 11 11 O 1.21688 * 119.99769 * 180.02562 * 10 9 8 12 12 N 1.34769 * 120.00175 * 0.02562 * 10 9 8 13 13 C 1.46497 * 120.00603 * 179.97438 * 12 10 9 14 14 C 1.52992 * 109.47658 * 179.97438 * 13 12 10 15 15 H 1.08997 * 112.85164 * 314.66973 * 14 13 12 16 16 C 1.53785 * 113.61371 * 85.86084 * 14 13 12 17 17 C 1.53959 * 87.01898 * 139.95524 * 16 14 13 18 18 H 1.08999 * 113.74111 * 220.05974 * 17 16 14 19 19 N 1.46494 * 113.53852 * 89.18713 * 17 16 14 20 20 C 1.36943 * 119.99718 * 107.50553 * 19 17 16 21 21 H 1.08005 * 119.99947 * 0.02562 * 20 19 17 22 22 C 1.38812 * 120.00002 * 179.97438 * 20 19 17 23 23 N 1.31620 * 120.00099 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00102 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46951 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47354 * 120.00276 * 24 22 20 27 27 H 1.48504 * 109.47000 * 240.00448 * 24 22 20 28 28 C 1.53782 * 87.11081 * 334.63570 * 17 16 14 29 29 S 1.70951 * 124.80006 * 134.99711 * 6 3 2 30 30 H 1.09004 * 109.47070 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47772 * 300.00112 * 1 2 3 32 32 H 1.08997 * 109.47183 * 60.00363 * 1 2 3 33 33 H 1.08991 * 109.47572 * 179.97438 * 5 3 2 34 34 H 1.08997 * 109.46976 * 300.00616 * 5 3 2 35 35 H 1.09007 * 109.47158 * 59.99811 * 5 3 2 36 36 H 1.08002 * 122.89999 * 179.97438 * 8 7 6 37 37 H 0.97002 * 119.99728 * 0.02562 * 12 10 9 38 38 H 1.09009 * 109.46865 * 300.00482 * 13 12 10 39 39 H 1.08997 * 109.46807 * 59.99324 * 13 12 10 40 40 H 1.08994 * 113.61873 * 254.53102 * 16 14 13 41 41 H 1.09003 * 113.61625 * 25.44026 * 16 14 13 42 42 H 0.96994 * 120.00600 * 287.50481 * 19 17 16 43 43 H 0.96989 * 120.00105 * 180.02562 * 23 22 20 44 44 H 1.09000 * 113.61979 * 270.81447 * 28 17 16 45 45 H 1.09000 * 113.61549 * 139.90770 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3450 1.9994 -0.5139 5 6 2.2176 1.7715 1.4425 6 6 3.3386 1.2639 -0.7103 7 7 4.2433 0.3555 -0.5327 8 6 5.3476 0.4617 -1.2282 9 6 5.3851 1.5399 -2.0507 10 6 6.4919 1.9127 -2.9381 11 8 6.4067 2.9091 -3.6314 12 7 7.6032 1.1518 -2.9855 13 6 8.7085 1.5237 -3.8722 14 6 9.8387 0.5017 -3.7349 15 1 10.0598 0.2519 -2.6973 16 6 9.6701 -0.7286 -4.6421 17 6 11.1871 -0.6512 -4.8932 18 1 11.4720 -0.8537 -5.9256 19 7 11.9800 -1.4123 -3.9245 20 6 12.5864 -2.5803 -4.3031 21 1 12.4804 -2.9402 -5.3159 22 6 13.3381 -3.3012 -3.3855 23 7 13.4677 -2.8624 -2.1514 24 14 14.1658 -4.8941 -3.9020 25 1 13.8673 -5.1663 -5.3310 26 1 15.6342 -4.7717 -3.7172 27 1 13.6534 -6.0112 -3.0684 28 6 11.0864 0.8477 -4.5647 29 16 3.8642 2.4103 -1.8645 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3635 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 2.6613 2.7670 1.4425 34 1 1.2568 1.8015 1.9563 35 1 2.8828 1.0775 1.9564 36 1 6.1604 -0.2452 -1.1501 37 1 7.6710 0.3573 -2.4331 38 1 8.3568 1.5408 -4.9038 39 1 9.0775 2.5120 -3.5979 40 1 9.3604 -1.6264 -4.1073 41 1 9.0701 -0.5364 -5.5316 42 1 12.0756 -1.0889 -3.0151 43 1 13.9933 -3.3658 -1.5103 44 1 10.8741 1.4717 -5.4328 45 1 11.9183 1.2207 -3.9673 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086366753.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:29 Heat of formation + Delta-G solvation = -3.785374 kcal Electronic energy + Delta-G solvation = -25779.551958 eV Core-core repulsion = 21925.230897 eV Total energy + Delta-G solvation = -3854.321061 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.52533 -39.60650 -38.58535 -38.25841 -34.78115 -33.32670 -32.90198 -30.69929 -29.86479 -27.52578 -27.08159 -26.16719 -25.09248 -23.78570 -23.35552 -22.09966 -21.54611 -19.87760 -18.81465 -18.37881 -17.68795 -17.24658 -16.63421 -16.19370 -15.86639 -15.65601 -15.54273 -14.99812 -14.70110 -14.57385 -14.14983 -14.10336 -13.71202 -13.63306 -13.28742 -13.14007 -12.91994 -12.78952 -12.31878 -12.20280 -11.96731 -11.91058 -11.52603 -11.45052 -11.06886 -10.88364 -10.72585 -10.51222 -10.30890 -10.14988 -9.97246 -9.82069 -9.76375 -9.71967 -9.52934 -9.36099 -9.07569 -8.91213 -7.02439 -5.82993 -3.12127 -0.13204 0.71884 1.26761 2.15162 2.98005 3.09401 3.31458 3.40429 3.46495 3.48542 3.59062 4.21600 4.49613 4.53351 4.54071 4.66604 4.82246 4.86347 4.89350 5.00401 5.03284 5.11411 5.19191 5.22916 5.25034 5.42870 5.56825 5.60063 5.66025 5.71981 5.81532 5.90443 6.05731 6.17907 6.28177 6.34208 6.54901 6.57745 6.71377 6.85435 7.00912 7.28282 7.32430 7.67694 7.97550 8.36178 9.47019 10.04200 10.38274 11.39444 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015222 B = 0.001975 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.059500 B =14173.726789 C =15464.640425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.166 3.834 4 H 0.083 0.917 5 C -0.169 4.169 6 C 0.032 3.968 7 N -0.449 5.449 8 C 0.094 3.906 9 C -0.288 4.288 10 C 0.592 3.408 11 O -0.540 6.540 12 N -0.708 5.708 13 C 0.132 3.868 14 C -0.121 4.121 15 H 0.094 0.906 16 C -0.169 4.169 17 C 0.167 3.833 18 H 0.063 0.937 19 N -0.706 5.706 20 C -0.242 4.242 21 H 0.073 0.927 22 C -0.013 4.013 23 N -0.932 5.932 24 Si 0.908 3.092 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C -0.147 4.147 29 S 0.234 5.766 30 H 0.091 0.909 31 H 0.045 0.955 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.185 0.815 37 H 0.404 0.596 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.077 0.923 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.213 12.419 4.336 29.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.282 6.282 3 C 0.104 3.896 4 H 0.100 0.900 5 C -0.227 4.227 6 C -0.243 4.243 7 N -0.162 5.162 8 C -0.065 4.065 9 C -0.413 4.413 10 C 0.376 3.624 11 O -0.419 6.419 12 N -0.359 5.359 13 C 0.009 3.991 14 C -0.139 4.139 15 H 0.112 0.888 16 C -0.210 4.210 17 C 0.055 3.945 18 H 0.081 0.919 19 N -0.344 5.344 20 C -0.373 4.373 21 H 0.091 0.909 22 C -0.209 4.209 23 N -0.580 5.580 24 Si 0.739 3.261 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 C -0.187 4.187 29 S 0.493 5.507 30 H 0.110 0.890 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.202 0.798 37 H 0.239 0.761 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.096 0.904 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -26.636 13.304 3.678 30.000 hybrid contribution 1.055 -1.682 0.528 2.054 sum -25.581 11.623 4.206 28.411 Atomic orbital electron populations 1.22903 0.80510 1.03454 1.00138 1.88107 1.19713 1.25457 1.94915 1.20482 0.87276 0.86461 0.95352 0.89950 1.22271 1.03457 1.02279 0.94743 1.27368 1.00426 0.96176 1.00356 1.66044 1.00773 1.25349 1.24075 1.22328 0.96105 0.96182 0.91923 1.25886 1.02156 1.03658 1.09587 1.16684 0.81198 0.83255 0.81246 1.90843 1.81005 1.26314 1.43726 1.45830 1.16450 1.28791 1.44852 1.21574 0.85305 0.98647 0.93538 1.22732 0.94662 0.96113 1.00436 0.88766 1.23930 1.01698 0.96985 0.98415 1.21090 0.89671 0.89565 0.94183 0.91896 1.42177 1.57525 1.24585 1.10125 1.19338 1.23748 0.98142 0.96099 0.90921 1.24770 1.00957 0.99377 0.95806 1.69664 1.44937 1.40067 1.03337 0.86099 0.79042 0.83309 0.77622 1.20489 1.21830 1.21826 1.23441 0.96432 0.99503 0.99287 1.83965 1.07212 1.25835 1.33707 0.89018 0.93635 0.93769 0.91080 0.91078 0.90465 0.79797 0.76111 0.91181 0.91423 0.91425 0.91363 0.78113 0.93471 0.90402 0.91239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 10.82 101.05 1.09 1.23 16 2 O -0.36 -3.35 10.32 -35.23 -0.36 -3.71 16 3 C 0.17 1.26 3.23 -27.88 -0.09 1.17 16 4 H 0.08 0.41 7.78 -51.93 -0.40 0.00 16 5 C -0.17 -1.05 9.51 37.16 0.35 -0.69 16 6 C 0.03 0.32 6.28 -13.29 -0.08 0.23 16 7 N -0.45 -5.33 10.49 -11.50 -0.12 -5.45 16 8 C 0.09 1.02 10.93 -18.85 -0.21 0.82 16 9 C -0.29 -3.35 6.48 -37.10 -0.24 -3.59 16 10 C 0.59 7.96 7.79 -12.85 -0.10 7.86 16 11 O -0.54 -8.91 16.97 5.20 0.09 -8.82 16 12 N -0.71 -8.56 5.54 -61.62 -0.34 -8.90 16 13 C 0.13 1.70 5.50 -4.05 -0.02 1.68 16 14 C -0.12 -1.73 3.62 -89.81 -0.33 -2.05 16 15 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 16 C -0.17 -2.72 7.44 -25.82 -0.19 -2.92 16 17 C 0.17 3.18 4.57 -67.03 -0.31 2.87 16 18 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 19 N -0.71 -17.07 5.31 -52.55 -0.28 -17.35 16 20 C -0.24 -6.58 9.97 -15.06 -0.15 -6.73 16 21 H 0.07 1.93 7.83 -52.48 -0.41 1.51 16 22 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 23 N -0.93 -27.60 13.06 55.49 0.72 -26.88 16 24 Si 0.91 22.09 29.55 -169.99 -5.02 17.06 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 C -0.15 -2.27 7.39 -25.92 -0.19 -2.46 16 29 S 0.23 2.26 23.01 -107.50 -2.47 -0.21 16 30 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.17 7.87 -51.93 -0.41 -0.24 16 32 H 0.04 0.18 8.08 -51.93 -0.42 -0.24 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.32 7.87 -51.93 -0.41 -0.09 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.19 1.62 7.15 -52.49 -0.38 1.25 16 37 H 0.40 4.18 7.18 -40.82 -0.29 3.89 16 38 H 0.07 0.93 7.88 -51.92 -0.41 0.52 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.07 0.99 7.92 -51.93 -0.41 0.58 16 42 H 0.38 9.84 7.90 -40.82 -0.32 9.52 16 43 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 45 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 393.55 15.07 5.93 5.93 Total: -1.00 -33.59 393.55 -9.21 -42.81 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -6.80 Total: 8.55 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -0.56 Total: -3.04 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: -0.02 Total: -58.58 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: -0.28 Total: -12.53 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -2.47 Total: -0.21 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.59 -9.21 -42.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086366753.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.021 kcal (2) G-P(sol) polarization free energy of solvation -33.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds