Wall clock time and date at job start Sat Apr 11 2020 05:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42901 * 113.99979 * 2 1 4 4 H 1.08995 * 109.47513 * 329.99627 * 3 2 1 5 5 C 1.53001 * 109.47458 * 89.99782 * 3 2 1 6 6 C 1.50705 * 109.47245 * 209.99506 * 3 2 1 7 7 N 1.29428 * 124.80628 * 314.98194 * 6 3 2 8 8 C 1.30944 * 117.36307 * 180.02562 * 7 6 3 9 9 C 1.35655 * 114.19124 * 0.26698 * 8 7 6 10 10 C 1.46687 * 126.12941 * 179.72655 * 9 8 7 11 11 O 1.21688 * 119.99769 * 180.02562 * 10 9 8 12 12 N 1.34769 * 120.00175 * 0.02562 * 10 9 8 13 13 C 1.46497 * 120.00603 * 179.97438 * 12 10 9 14 14 C 1.52992 * 109.47658 * 179.97438 * 13 12 10 15 15 H 1.08997 * 112.85164 * 314.66973 * 14 13 12 16 16 C 1.53785 * 113.61371 * 85.86084 * 14 13 12 17 17 C 1.53959 * 87.01898 * 139.95524 * 16 14 13 18 18 H 1.08999 * 113.74111 * 220.05974 * 17 16 14 19 19 N 1.46494 * 113.53852 * 89.18713 * 17 16 14 20 20 C 1.36943 * 119.99718 * 107.50553 * 19 17 16 21 21 H 1.08005 * 119.99947 * 0.02562 * 20 19 17 22 22 C 1.38812 * 120.00002 * 179.97438 * 20 19 17 23 23 N 1.31620 * 120.00099 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00102 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46951 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47354 * 120.00276 * 24 22 20 27 27 H 1.48504 * 109.47000 * 240.00448 * 24 22 20 28 28 C 1.53782 * 87.11081 * 334.63570 * 17 16 14 29 29 S 1.70951 * 124.80006 * 134.99711 * 6 3 2 30 30 H 1.09004 * 109.47070 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47772 * 300.00112 * 1 2 3 32 32 H 1.08997 * 109.47183 * 60.00363 * 1 2 3 33 33 H 1.08991 * 109.47572 * 179.97438 * 5 3 2 34 34 H 1.08997 * 109.46976 * 300.00616 * 5 3 2 35 35 H 1.09007 * 109.47158 * 59.99811 * 5 3 2 36 36 H 1.08002 * 122.89999 * 179.97438 * 8 7 6 37 37 H 0.97002 * 119.99728 * 0.02562 * 12 10 9 38 38 H 1.09009 * 109.46865 * 300.00482 * 13 12 10 39 39 H 1.08997 * 109.46807 * 59.99324 * 13 12 10 40 40 H 1.08994 * 113.61873 * 254.53102 * 16 14 13 41 41 H 1.09003 * 113.61625 * 25.44026 * 16 14 13 42 42 H 0.96994 * 120.00600 * 287.50481 * 19 17 16 43 43 H 0.96989 * 120.00105 * 180.02562 * 23 22 20 44 44 H 1.09000 * 113.61979 * 270.81447 * 28 17 16 45 45 H 1.09000 * 113.61549 * 139.90770 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3450 1.9994 -0.5139 5 6 2.2176 1.7715 1.4425 6 6 3.3386 1.2639 -0.7103 7 7 4.2433 0.3555 -0.5327 8 6 5.3476 0.4617 -1.2282 9 6 5.3851 1.5399 -2.0507 10 6 6.4919 1.9127 -2.9381 11 8 6.4067 2.9091 -3.6314 12 7 7.6032 1.1518 -2.9855 13 6 8.7085 1.5237 -3.8722 14 6 9.8387 0.5017 -3.7349 15 1 10.0598 0.2519 -2.6973 16 6 9.6701 -0.7286 -4.6421 17 6 11.1871 -0.6512 -4.8932 18 1 11.4720 -0.8537 -5.9256 19 7 11.9800 -1.4123 -3.9245 20 6 12.5864 -2.5803 -4.3031 21 1 12.4804 -2.9402 -5.3159 22 6 13.3381 -3.3012 -3.3855 23 7 13.4677 -2.8624 -2.1514 24 14 14.1658 -4.8941 -3.9020 25 1 13.8673 -5.1663 -5.3310 26 1 15.6342 -4.7717 -3.7172 27 1 13.6534 -6.0112 -3.0684 28 6 11.0864 0.8477 -4.5647 29 16 3.8642 2.4103 -1.8645 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3635 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 2.6613 2.7670 1.4425 34 1 1.2568 1.8015 1.9563 35 1 2.8828 1.0775 1.9564 36 1 6.1604 -0.2452 -1.1501 37 1 7.6710 0.3573 -2.4331 38 1 8.3568 1.5408 -4.9038 39 1 9.0775 2.5120 -3.5979 40 1 9.3604 -1.6264 -4.1073 41 1 9.0701 -0.5364 -5.5316 42 1 12.0756 -1.0889 -3.0151 43 1 13.9933 -3.3658 -1.5103 44 1 10.8741 1.4717 -5.4328 45 1 11.9183 1.2207 -3.9673 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086366753.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:28 Heat of formation + Delta-G solvation = -27.799631 kcal Electronic energy + Delta-G solvation = -25780.593294 eV Core-core repulsion = 21925.230897 eV Total energy + Delta-G solvation = -3855.362397 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.41696 -40.60701 -39.79814 -38.96292 -36.08210 -35.02828 -33.60412 -32.17232 -31.08749 -28.55381 -27.70461 -26.93548 -26.42845 -25.66047 -24.11052 -23.30637 -22.54181 -20.82688 -19.82549 -19.53866 -19.23790 -18.49355 -17.30096 -17.10925 -16.68205 -16.67367 -16.48536 -16.29137 -15.86322 -15.78124 -15.31134 -15.28081 -14.90202 -14.69076 -14.55607 -14.17177 -13.74350 -13.60775 -13.30165 -13.26607 -12.95403 -12.92622 -12.74621 -12.66610 -12.62458 -12.12907 -12.05183 -12.00804 -11.79099 -11.48776 -11.38474 -10.97498 -10.90394 -10.79655 -10.69302 -10.53784 -10.23986 -10.01004 -8.99199 -7.95466 -5.23353 -0.95161 -0.05245 0.47764 1.28650 1.48076 1.48333 1.58331 2.02346 2.11560 2.55730 2.76695 2.95155 3.37397 3.59089 3.68122 3.73041 3.78566 3.87984 4.00427 4.02813 4.08138 4.15068 4.33060 4.40518 4.47653 4.56965 4.65796 4.71909 4.74579 4.78122 4.87791 4.90917 4.94334 5.00115 5.11057 5.21397 5.22135 5.35528 5.45220 5.54023 5.66971 6.09950 6.28589 6.31782 6.53146 6.97397 7.33682 8.11246 8.33091 9.27912 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015222 B = 0.001975 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.059500 B =14173.726789 C =15464.640425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.396 6.396 3 C 0.159 3.841 4 H 0.112 0.888 5 C -0.165 4.165 6 C 0.036 3.964 7 N -0.481 5.481 8 C 0.100 3.900 9 C -0.316 4.316 10 C 0.595 3.405 11 O -0.575 6.575 12 N -0.703 5.703 13 C 0.141 3.859 14 C -0.103 4.103 15 H 0.083 0.917 16 C -0.154 4.154 17 C 0.142 3.858 18 H 0.060 0.940 19 N -0.719 5.719 20 C -0.240 4.240 21 H 0.077 0.923 22 C -0.076 4.076 23 N -0.968 5.968 24 Si 0.971 3.029 25 H -0.266 1.266 26 H -0.295 1.295 27 H -0.295 1.295 28 C -0.133 4.133 29 S 0.264 5.736 30 H 0.094 0.906 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.054 0.946 36 H 0.198 0.802 37 H 0.412 0.588 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.048 0.952 41 H 0.092 0.908 42 H 0.374 0.626 43 H 0.251 0.749 44 H 0.107 0.893 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.068 13.157 3.724 31.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.315 6.315 3 C 0.098 3.902 4 H 0.130 0.870 5 C -0.224 4.224 6 C -0.238 4.238 7 N -0.195 5.195 8 C -0.059 4.059 9 C -0.440 4.440 10 C 0.381 3.619 11 O -0.456 6.456 12 N -0.353 5.353 13 C 0.018 3.982 14 C -0.122 4.122 15 H 0.101 0.899 16 C -0.195 4.195 17 C 0.032 3.968 18 H 0.078 0.922 19 N -0.358 5.358 20 C -0.372 4.372 21 H 0.094 0.906 22 C -0.268 4.268 23 N -0.619 5.619 24 Si 0.801 3.199 25 H -0.191 1.191 26 H -0.222 1.222 27 H -0.222 1.222 28 C -0.172 4.172 29 S 0.524 5.476 30 H 0.112 0.888 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.110 0.890 35 H 0.073 0.927 36 H 0.215 0.785 37 H 0.249 0.751 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.110 0.890 42 H 0.207 0.793 43 H 0.059 0.941 44 H 0.125 0.875 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -28.528 14.053 3.026 31.945 hybrid contribution 1.517 -1.871 0.688 2.505 sum -27.011 12.182 3.714 29.863 Atomic orbital electron populations 1.23100 0.78697 1.04185 1.01612 1.88058 1.21820 1.26445 1.95136 1.20796 0.86576 0.86723 0.96152 0.87042 1.22262 1.04198 1.02106 0.93824 1.27944 1.00892 0.95390 0.99576 1.66120 1.01532 1.26666 1.25211 1.22557 0.96252 0.96005 0.91108 1.25777 1.02871 1.04909 1.10479 1.16833 0.81534 0.82667 0.80892 1.90819 1.81736 1.27773 1.45298 1.45762 1.16030 1.28917 1.44624 1.21420 0.84863 0.98008 0.93920 1.22505 0.94747 0.95530 0.99391 0.89895 1.23753 0.99248 0.97010 0.99473 1.21435 0.90816 0.91560 0.92948 0.92177 1.42306 1.58417 1.24488 1.10552 1.19707 1.22652 0.98780 0.96050 0.90551 1.25539 1.02549 1.02714 0.96033 1.69808 1.46350 1.41421 1.04335 0.85100 0.77547 0.79526 0.77755 1.19057 1.22187 1.22187 1.23339 0.96484 0.97059 1.00319 1.83801 1.05865 1.25036 1.32942 0.88792 0.91904 0.92496 0.90005 0.89012 0.92668 0.78512 0.75138 0.90774 0.91185 0.93311 0.88990 0.79332 0.94063 0.87468 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 10.82 113.37 1.23 1.40 16 2 O -0.40 -6.76 10.32 -148.98 -1.54 -8.30 16 3 C 0.16 2.13 3.23 29.85 0.10 2.23 16 4 H 0.11 0.79 7.78 -2.39 -0.02 0.78 16 5 C -0.16 -1.77 9.51 71.98 0.68 -1.08 16 6 C 0.04 0.68 6.28 88.46 0.56 1.24 16 7 N -0.48 -11.13 10.49 -190.30 -2.00 -13.13 16 8 C 0.10 2.13 10.93 84.23 0.92 3.06 16 9 C -0.32 -7.10 6.48 23.88 0.15 -6.94 16 10 C 0.59 15.48 7.79 86.45 0.67 16.15 16 11 O -0.57 -18.47 16.97 -4.31 -0.07 -18.54 16 12 N -0.70 -16.15 5.54 -467.10 -2.59 -18.74 16 13 C 0.14 3.38 5.50 86.38 0.47 3.85 16 14 C -0.10 -2.81 3.62 -10.27 -0.04 -2.84 16 15 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 16 C -0.15 -4.75 7.44 31.18 0.23 -4.52 16 17 C 0.14 5.30 4.57 45.58 0.21 5.51 16 18 H 0.06 2.25 8.10 -2.39 -0.02 2.23 16 19 N -0.72 -35.08 5.31 -320.16 -1.70 -36.78 16 20 C -0.24 -13.09 9.97 84.03 0.84 -12.26 16 21 H 0.08 4.02 7.83 -2.91 -0.02 3.99 16 22 C -0.08 -4.32 5.50 84.86 0.47 -3.85 16 23 N -0.97 -58.49 13.06 21.65 0.28 -58.21 16 24 Si 0.97 45.80 29.55 68.60 2.03 47.82 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 26 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 27 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 28 C -0.13 -3.90 7.39 31.12 0.23 -3.67 16 29 S 0.26 4.77 23.01 -56.49 -1.30 3.47 16 30 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.06 0.31 7.87 -2.39 -0.02 0.29 16 32 H 0.06 0.33 8.08 -2.39 -0.02 0.31 16 33 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.09 0.59 7.87 -2.39 -0.02 0.57 16 35 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 36 H 0.20 3.36 7.15 -2.91 -0.02 3.34 16 37 H 0.41 8.12 7.18 -92.71 -0.67 7.46 16 38 H 0.07 1.77 7.88 -2.38 -0.02 1.75 16 39 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.09 2.42 7.92 -2.39 -0.02 2.41 16 42 H 0.37 19.55 7.90 -92.71 -0.73 18.82 16 43 H 0.25 14.70 8.31 -92.72 -0.77 13.93 16 44 H 0.11 2.55 8.10 -2.39 -0.02 2.53 16 45 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -72.82 393.55 -0.54 -73.36 By element: Atomic # 1 Polarization: 31.17 SS G_CDS: -0.38 Total: 30.79 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: 6.72 Total: -1.74 kcal Atomic # 7 Polarization: -120.86 SS G_CDS: -6.00 Total: -126.86 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -1.61 Total: -26.84 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.82 kcal Atomic # 16 Polarization: 4.77 SS G_CDS: -1.30 Total: 3.47 kcal Total: -72.82 -0.54 -73.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086366753.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.561 kcal (2) G-P(sol) polarization free energy of solvation -72.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds