Wall clock time and date at job start Sat Apr 11 2020 05:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42911 * 114.00166 * 2 1 4 4 H 1.08997 * 109.46516 * 30.00120 * 3 2 1 5 5 C 1.53000 * 109.46950 * 269.99920 * 3 2 1 6 6 C 1.50699 * 109.46880 * 150.00042 * 3 2 1 7 7 N 1.29424 * 124.80652 * 45.02690 * 6 3 2 8 8 C 1.30945 * 117.35960 * 179.72467 * 7 6 3 9 9 C 1.35661 * 114.19220 * 0.45033 * 8 7 6 10 10 C 1.46686 * 126.12505 * 179.85023 * 9 8 7 11 11 O 1.21693 * 119.99585 * 179.69181 * 10 9 8 12 12 N 1.34777 * 120.00342 * 359.42024 * 10 9 8 13 13 C 1.46504 * 119.99854 * 180.27605 * 12 10 9 14 14 C 1.52996 * 109.46681 * 179.97438 * 13 12 10 15 15 H 1.09004 * 112.85055 * 316.19231 * 14 13 12 16 16 C 1.53781 * 113.61817 * 87.50246 * 14 13 12 17 17 C 1.53779 * 87.08085 * 139.97548 * 16 14 13 18 18 H 1.09004 * 113.69066 * 220.00178 * 17 16 14 19 19 N 1.46501 * 113.61329 * 89.12048 * 17 16 14 20 20 C 1.36933 * 120.00527 * 107.49625 * 19 17 16 21 21 H 1.08002 * 119.99672 * 0.02562 * 20 19 17 22 22 C 1.38810 * 120.00318 * 179.97438 * 20 19 17 23 23 N 1.31617 * 119.99924 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00107 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47002 * 0.02562 * 24 22 20 26 26 H 1.48507 * 109.46933 * 119.99978 * 24 22 20 27 27 H 1.48495 * 109.46878 * 240.00018 * 24 22 20 28 28 C 1.53778 * 87.08541 * 334.56866 * 17 16 14 29 29 S 1.70952 * 124.80101 * 224.99738 * 6 3 2 30 30 H 1.09004 * 109.47018 * 300.00527 * 1 2 3 31 31 H 1.09001 * 109.47242 * 59.99782 * 1 2 3 32 32 H 1.08992 * 109.47352 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47217 * 300.00018 * 5 3 2 34 34 H 1.09006 * 109.46921 * 60.00008 * 5 3 2 35 35 H 1.08995 * 109.46960 * 179.97438 * 5 3 2 36 36 H 1.08002 * 122.89974 * 180.30486 * 8 7 6 37 37 H 0.97000 * 119.99736 * 0.26879 * 12 10 9 38 38 H 1.08998 * 109.46968 * 299.99782 * 13 12 10 39 39 H 1.08997 * 109.47198 * 59.99605 * 13 12 10 40 40 H 1.08992 * 113.61117 * 254.52551 * 16 14 13 41 41 H 1.08995 * 113.61123 * 25.42964 * 16 14 13 42 42 H 0.97005 * 119.99681 * 287.49455 * 19 17 16 43 43 H 0.97006 * 119.99928 * 179.97438 * 23 22 20 44 44 H 1.08998 * 113.61548 * 270.88628 * 28 17 16 45 45 H 1.08993 * 113.61513 * 139.97786 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 0.5139 5 6 2.2177 1.7714 -1.4425 6 6 3.3387 1.2639 0.7104 7 7 4.2433 0.3555 0.5328 8 6 5.3496 0.4644 1.2247 9 6 5.3825 1.5366 2.0553 10 6 6.4868 1.9058 2.9475 11 8 6.3997 2.8996 3.6443 12 7 7.5955 1.1413 2.9996 13 6 8.6958 1.5068 3.8952 14 6 9.8233 0.4811 3.7626 15 1 9.4603 -0.5465 3.7407 16 6 10.8240 0.8070 2.6414 17 6 11.9310 0.3393 3.6009 18 1 12.8301 0.9546 3.5654 19 7 12.2190 -1.0942 3.5104 20 6 13.3799 -1.5239 2.9248 21 1 14.0834 -0.8058 2.5300 22 6 13.6529 -2.8822 2.8396 23 7 12.7958 -3.7572 3.3212 24 14 15.2369 -3.4682 2.0414 25 1 16.0243 -2.2951 1.5843 26 1 16.0314 -4.2429 3.0283 27 1 14.9144 -4.3324 0.8777 28 6 10.9792 0.7050 4.7520 29 16 3.8643 2.4103 1.8645 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 2.8830 1.0774 -1.9563 34 1 1.2569 1.8015 -1.9563 35 1 2.6607 2.7673 -1.4425 36 1 6.1644 -0.2398 1.1431 37 1 7.6649 0.3491 2.4441 38 1 9.0696 2.4949 3.6270 39 1 8.3372 1.5210 4.9244 40 1 10.7138 0.1747 1.7605 41 1 10.8767 1.8681 2.3981 42 1 11.5873 -1.7392 3.8654 43 1 12.9865 -4.7065 3.2613 44 1 11.0742 1.7383 5.0856 45 1 10.9943 -0.0096 5.5748 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086366754.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:32 Heat of formation + Delta-G solvation = -3.620497 kcal Electronic energy + Delta-G solvation = -25773.602887 eV Core-core repulsion = 21919.288976 eV Total energy + Delta-G solvation = -3854.313911 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.52543 -39.60698 -38.59169 -38.26045 -34.78263 -33.32831 -32.90269 -30.69956 -29.86551 -27.52658 -27.08210 -26.16784 -25.09175 -23.78548 -23.35502 -22.10038 -21.55146 -19.88136 -18.81416 -18.37770 -17.68652 -17.24610 -16.63320 -16.17208 -15.89977 -15.66500 -15.52890 -14.98031 -14.70102 -14.55702 -14.23936 -14.05452 -13.71913 -13.59575 -13.30162 -13.14207 -12.92350 -12.79406 -12.31936 -12.20688 -11.96946 -11.90923 -11.52584 -11.44813 -11.06928 -10.88389 -10.72632 -10.51410 -10.31023 -10.15013 -9.96917 -9.82708 -9.76249 -9.71930 -9.52815 -9.35996 -9.07567 -8.91375 -7.02519 -5.82964 -3.12102 -0.13259 0.71855 1.26800 2.15144 2.98014 3.09342 3.31428 3.40371 3.46382 3.48481 3.59072 4.21579 4.49585 4.53348 4.54017 4.66594 4.82282 4.86279 4.89339 4.99866 5.03152 5.11408 5.19338 5.22890 5.25071 5.42885 5.56804 5.60029 5.66113 5.71964 5.81547 5.90684 6.05397 6.17765 6.28118 6.34238 6.54884 6.57676 6.71323 6.85477 7.00838 7.28231 7.32373 7.67633 7.97498 8.36121 9.46992 10.04204 10.38300 11.39442 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015460 B = 0.001966 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.682028 B =14239.834014 C =15517.551749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.166 3.834 4 H 0.083 0.917 5 C -0.169 4.169 6 C 0.032 3.968 7 N -0.448 5.448 8 C 0.093 3.907 9 C -0.288 4.288 10 C 0.592 3.408 11 O -0.540 6.540 12 N -0.709 5.709 13 C 0.132 3.868 14 C -0.121 4.121 15 H 0.094 0.906 16 C -0.169 4.169 17 C 0.167 3.833 18 H 0.063 0.937 19 N -0.706 5.706 20 C -0.242 4.242 21 H 0.073 0.927 22 C -0.013 4.013 23 N -0.932 5.932 24 Si 0.908 3.092 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C -0.147 4.147 29 S 0.235 5.765 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.185 0.815 37 H 0.404 0.596 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.077 0.923 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.466 13.423 -5.652 29.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.282 6.282 3 C 0.104 3.896 4 H 0.100 0.900 5 C -0.228 4.228 6 C -0.243 4.243 7 N -0.162 5.162 8 C -0.065 4.065 9 C -0.413 4.413 10 C 0.376 3.624 11 O -0.419 6.419 12 N -0.359 5.359 13 C 0.009 3.991 14 C -0.139 4.139 15 H 0.112 0.888 16 C -0.210 4.210 17 C 0.055 3.945 18 H 0.081 0.919 19 N -0.344 5.344 20 C -0.373 4.373 21 H 0.091 0.909 22 C -0.209 4.209 23 N -0.580 5.580 24 Si 0.739 3.261 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 C -0.187 4.187 29 S 0.493 5.507 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.110 0.890 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.202 0.798 37 H 0.239 0.761 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.096 0.904 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -25.798 14.429 -5.150 30.004 hybrid contribution 1.146 -1.561 -0.685 2.054 sum -24.652 12.867 -5.835 28.413 Atomic orbital electron populations 1.22904 0.80509 1.03453 1.00138 1.88110 1.19714 1.25454 1.94917 1.20484 0.87278 0.86463 0.95346 0.89950 1.22273 1.03462 1.02271 0.94745 1.27365 1.00440 0.96087 1.00438 1.66043 1.00698 1.25327 1.24167 1.22330 0.96086 0.96257 0.91873 1.25885 1.02226 1.03768 1.09413 1.16688 0.81167 0.83230 0.81302 1.90844 1.80881 1.26480 1.43681 1.45839 1.16735 1.28954 1.44409 1.21580 0.85515 0.98798 0.93171 1.22736 0.92844 0.98630 0.99738 0.88752 1.23900 0.98911 1.00020 0.98156 1.21055 0.93918 0.87360 0.92190 0.91907 1.42177 1.22862 0.99573 1.69803 1.19333 0.96540 0.90980 1.30483 0.90924 1.24770 0.98651 0.95888 1.01601 1.69669 1.36139 1.00995 1.51188 0.86100 0.82880 0.78486 0.78610 1.20492 1.21832 1.21824 1.23446 0.96070 1.01145 0.98025 1.83961 1.07492 1.25674 1.33572 0.93767 0.93637 0.89016 0.90458 0.91082 0.91085 0.79798 0.76111 0.91164 0.91421 0.91435 0.91348 0.78112 0.93470 0.90401 0.91246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 10.82 101.05 1.09 1.23 16 2 O -0.36 -3.35 10.32 -35.23 -0.36 -3.71 16 3 C 0.17 1.26 3.23 -27.88 -0.09 1.17 16 4 H 0.08 0.41 7.78 -51.93 -0.40 0.00 16 5 C -0.17 -1.05 9.51 37.16 0.35 -0.69 16 6 C 0.03 0.32 6.28 -13.29 -0.08 0.23 16 7 N -0.45 -5.33 10.49 -11.50 -0.12 -5.45 16 8 C 0.09 1.02 10.93 -18.85 -0.21 0.82 16 9 C -0.29 -3.35 6.48 -37.09 -0.24 -3.59 16 10 C 0.59 7.96 7.79 -12.85 -0.10 7.86 16 11 O -0.54 -8.91 16.97 5.20 0.09 -8.82 16 12 N -0.71 -8.56 5.54 -61.62 -0.34 -8.90 16 13 C 0.13 1.70 5.51 -4.04 -0.02 1.68 16 14 C -0.12 -1.73 3.63 -89.81 -0.33 -2.05 16 15 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 16 C -0.17 -2.71 7.43 -25.92 -0.19 -2.90 16 17 C 0.17 3.17 4.56 -67.12 -0.31 2.87 16 18 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 19 N -0.71 -17.07 5.31 -52.64 -0.28 -17.35 16 20 C -0.24 -6.58 9.97 -15.06 -0.15 -6.73 16 21 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 22 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 23 N -0.93 -27.61 13.06 55.49 0.72 -26.88 16 24 Si 0.91 22.08 29.55 -169.99 -5.02 17.05 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 C -0.15 -2.28 7.39 -25.92 -0.19 -2.47 16 29 S 0.23 2.27 23.01 -107.50 -2.47 -0.21 16 30 H 0.04 0.18 8.09 -51.93 -0.42 -0.24 16 31 H 0.04 0.17 7.87 -51.93 -0.41 -0.24 16 32 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.32 7.87 -51.93 -0.41 -0.09 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.19 1.62 7.15 -52.49 -0.38 1.24 16 37 H 0.40 4.18 7.18 -40.82 -0.29 3.88 16 38 H 0.07 0.93 7.84 -51.93 -0.41 0.52 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.07 0.99 7.90 -51.93 -0.41 0.58 16 42 H 0.38 9.85 7.90 -40.82 -0.32 9.52 16 43 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 45 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 393.50 15.07 5.93 5.93 Total: -1.00 -33.60 393.50 -9.21 -42.81 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -6.80 Total: 8.56 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -0.56 Total: -3.04 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: -0.02 Total: -58.58 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: -0.28 Total: -12.53 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Atomic # 16 Polarization: 2.27 SS G_CDS: -2.47 Total: -0.21 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.60 -9.21 -42.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086366754.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.193 kcal (2) G-P(sol) polarization free energy of solvation -33.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds