Wall clock time and date at job start Sat Apr 11 2020 05:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42911 * 114.00166 * 2 1 4 4 H 1.08997 * 109.46516 * 30.00120 * 3 2 1 5 5 C 1.53000 * 109.46950 * 269.99920 * 3 2 1 6 6 C 1.50699 * 109.46880 * 150.00042 * 3 2 1 7 7 N 1.29424 * 124.80652 * 45.02690 * 6 3 2 8 8 C 1.30945 * 117.35960 * 179.72467 * 7 6 3 9 9 C 1.35661 * 114.19220 * 0.45033 * 8 7 6 10 10 C 1.46686 * 126.12505 * 179.85023 * 9 8 7 11 11 O 1.21693 * 119.99585 * 179.69181 * 10 9 8 12 12 N 1.34777 * 120.00342 * 359.42024 * 10 9 8 13 13 C 1.46504 * 119.99854 * 180.27605 * 12 10 9 14 14 C 1.52996 * 109.46681 * 179.97438 * 13 12 10 15 15 H 1.09004 * 112.85055 * 316.19231 * 14 13 12 16 16 C 1.53781 * 113.61817 * 87.50246 * 14 13 12 17 17 C 1.53779 * 87.08085 * 139.97548 * 16 14 13 18 18 H 1.09004 * 113.69066 * 220.00178 * 17 16 14 19 19 N 1.46501 * 113.61329 * 89.12048 * 17 16 14 20 20 C 1.36933 * 120.00527 * 107.49625 * 19 17 16 21 21 H 1.08002 * 119.99672 * 0.02562 * 20 19 17 22 22 C 1.38810 * 120.00318 * 179.97438 * 20 19 17 23 23 N 1.31617 * 119.99924 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00107 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47002 * 0.02562 * 24 22 20 26 26 H 1.48507 * 109.46933 * 119.99978 * 24 22 20 27 27 H 1.48495 * 109.46878 * 240.00018 * 24 22 20 28 28 C 1.53778 * 87.08541 * 334.56866 * 17 16 14 29 29 S 1.70952 * 124.80101 * 224.99738 * 6 3 2 30 30 H 1.09004 * 109.47018 * 300.00527 * 1 2 3 31 31 H 1.09001 * 109.47242 * 59.99782 * 1 2 3 32 32 H 1.08992 * 109.47352 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47217 * 300.00018 * 5 3 2 34 34 H 1.09006 * 109.46921 * 60.00008 * 5 3 2 35 35 H 1.08995 * 109.46960 * 179.97438 * 5 3 2 36 36 H 1.08002 * 122.89974 * 180.30486 * 8 7 6 37 37 H 0.97000 * 119.99736 * 0.26879 * 12 10 9 38 38 H 1.08998 * 109.46968 * 299.99782 * 13 12 10 39 39 H 1.08997 * 109.47198 * 59.99605 * 13 12 10 40 40 H 1.08992 * 113.61117 * 254.52551 * 16 14 13 41 41 H 1.08995 * 113.61123 * 25.42964 * 16 14 13 42 42 H 0.97005 * 119.99681 * 287.49455 * 19 17 16 43 43 H 0.97006 * 119.99928 * 179.97438 * 23 22 20 44 44 H 1.08998 * 113.61548 * 270.88628 * 28 17 16 45 45 H 1.08993 * 113.61513 * 139.97786 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 0.5139 5 6 2.2177 1.7714 -1.4425 6 6 3.3387 1.2639 0.7104 7 7 4.2433 0.3555 0.5328 8 6 5.3496 0.4644 1.2247 9 6 5.3825 1.5366 2.0553 10 6 6.4868 1.9058 2.9475 11 8 6.3997 2.8996 3.6443 12 7 7.5955 1.1413 2.9996 13 6 8.6958 1.5068 3.8952 14 6 9.8233 0.4811 3.7626 15 1 9.4603 -0.5465 3.7407 16 6 10.8240 0.8070 2.6414 17 6 11.9310 0.3393 3.6009 18 1 12.8301 0.9546 3.5654 19 7 12.2190 -1.0942 3.5104 20 6 13.3799 -1.5239 2.9248 21 1 14.0834 -0.8058 2.5300 22 6 13.6529 -2.8822 2.8396 23 7 12.7958 -3.7572 3.3212 24 14 15.2369 -3.4682 2.0414 25 1 16.0243 -2.2951 1.5843 26 1 16.0314 -4.2429 3.0283 27 1 14.9144 -4.3324 0.8777 28 6 10.9792 0.7050 4.7520 29 16 3.8643 2.4103 1.8645 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 2.8830 1.0774 -1.9563 34 1 1.2569 1.8015 -1.9563 35 1 2.6607 2.7673 -1.4425 36 1 6.1644 -0.2398 1.1431 37 1 7.6649 0.3491 2.4441 38 1 9.0696 2.4949 3.6270 39 1 8.3372 1.5210 4.9244 40 1 10.7138 0.1747 1.7605 41 1 10.8767 1.8681 2.3981 42 1 11.5873 -1.7392 3.8654 43 1 12.9865 -4.7065 3.2613 44 1 11.0742 1.7383 5.0856 45 1 10.9943 -0.0096 5.5748 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086366754.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:31 Heat of formation + Delta-G solvation = -27.652213 kcal Electronic energy + Delta-G solvation = -25774.644981 eV Core-core repulsion = 21919.288976 eV Total energy + Delta-G solvation = -3855.356005 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.41679 -40.60886 -39.80539 -38.96150 -36.08198 -35.03103 -33.60405 -32.17199 -31.08821 -28.55464 -27.70480 -26.93570 -26.42574 -25.65984 -24.10987 -23.30750 -22.54506 -20.83168 -19.81993 -19.53898 -19.23731 -18.49243 -17.30280 -17.08190 -16.76662 -16.63994 -16.46664 -16.28098 -15.83939 -15.79396 -15.32214 -15.27289 -14.94120 -14.66023 -14.55046 -14.15886 -13.78646 -13.59397 -13.30194 -13.25947 -12.95324 -12.92603 -12.74644 -12.65897 -12.62768 -12.12856 -12.05145 -12.00806 -11.79036 -11.48810 -11.38269 -10.97148 -10.90673 -10.80309 -10.68407 -10.54308 -10.23863 -10.00890 -8.99256 -7.95391 -5.23287 -0.95202 -0.05249 0.47824 1.28651 1.48140 1.48353 1.58399 2.02313 2.11620 2.55779 2.76697 2.95171 3.37516 3.59120 3.68092 3.73028 3.78269 3.87975 4.00412 4.02895 4.08102 4.15115 4.33243 4.40718 4.47656 4.56925 4.65852 4.71988 4.74725 4.78160 4.87779 4.90931 4.94479 5.00293 5.10946 5.21302 5.22108 5.35692 5.45367 5.54168 5.67081 6.09892 6.28567 6.31734 6.53152 6.97366 7.33679 8.11290 8.33117 9.27976 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015460 B = 0.001966 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.682028 B =14239.834014 C =15517.551749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.396 6.396 3 C 0.159 3.841 4 H 0.112 0.888 5 C -0.165 4.165 6 C 0.036 3.964 7 N -0.481 5.481 8 C 0.100 3.900 9 C -0.316 4.316 10 C 0.595 3.405 11 O -0.575 6.575 12 N -0.703 5.703 13 C 0.141 3.859 14 C -0.103 4.103 15 H 0.083 0.917 16 C -0.154 4.154 17 C 0.142 3.858 18 H 0.060 0.940 19 N -0.720 5.720 20 C -0.240 4.240 21 H 0.077 0.923 22 C -0.076 4.076 23 N -0.969 5.969 24 Si 0.971 3.029 25 H -0.266 1.266 26 H -0.295 1.295 27 H -0.294 1.294 28 C -0.133 4.133 29 S 0.265 5.735 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.054 0.946 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.198 0.802 37 H 0.412 0.588 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.048 0.952 41 H 0.093 0.907 42 H 0.374 0.626 43 H 0.250 0.750 44 H 0.107 0.893 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.616 15.104 -6.265 31.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.315 6.315 3 C 0.097 3.903 4 H 0.130 0.870 5 C -0.224 4.224 6 C -0.238 4.238 7 N -0.195 5.195 8 C -0.059 4.059 9 C -0.440 4.440 10 C 0.381 3.619 11 O -0.456 6.456 12 N -0.353 5.353 13 C 0.018 3.982 14 C -0.122 4.122 15 H 0.101 0.899 16 C -0.194 4.194 17 C 0.032 3.968 18 H 0.078 0.922 19 N -0.358 5.358 20 C -0.372 4.372 21 H 0.095 0.905 22 C -0.269 4.269 23 N -0.619 5.619 24 Si 0.801 3.199 25 H -0.190 1.190 26 H -0.222 1.222 27 H -0.222 1.222 28 C -0.172 4.172 29 S 0.524 5.476 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.112 0.888 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.215 0.785 37 H 0.249 0.751 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.111 0.889 42 H 0.207 0.793 43 H 0.059 0.941 44 H 0.125 0.875 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -26.955 16.161 -5.776 31.955 hybrid contribution 1.417 -2.006 -0.512 2.509 sum -25.538 14.155 -6.288 29.868 Atomic orbital electron populations 1.23100 0.78698 1.04183 1.01613 1.88062 1.21820 1.26450 1.95139 1.20799 0.86578 0.86722 0.96156 0.87047 1.22263 1.04203 1.02105 0.93813 1.27941 1.00907 0.95309 0.99649 1.66119 1.01451 1.26628 1.25324 1.22559 0.96243 0.96061 0.91067 1.25777 1.02948 1.05041 1.10283 1.16837 0.81493 0.82649 0.80952 1.90820 1.81602 1.27962 1.45243 1.45771 1.16337 1.29071 1.44169 1.21425 0.85085 0.98208 0.93490 1.22511 0.92954 0.98495 0.98244 0.89918 1.23723 0.97616 1.00919 0.97156 1.21400 0.95227 0.84753 0.95394 0.92166 1.42308 1.21977 1.01624 1.69869 1.19706 0.97221 0.91163 1.29092 0.90530 1.25541 1.01819 0.96264 1.03227 1.69814 1.38004 1.00832 1.53279 0.85098 0.79476 0.78049 0.77292 1.19033 1.22217 1.22176 1.23345 0.94798 1.02454 0.96642 1.83797 1.06151 1.24873 1.32802 0.92498 0.91899 0.88795 0.92655 0.89022 0.89994 0.78510 0.75135 0.90699 0.91240 0.93313 0.88905 0.79349 0.94071 0.87453 0.92339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 10.82 113.37 1.23 1.40 16 2 O -0.40 -6.77 10.32 -148.98 -1.54 -8.31 16 3 C 0.16 2.13 3.23 29.85 0.10 2.23 16 4 H 0.11 0.79 7.78 -2.39 -0.02 0.78 16 5 C -0.16 -1.76 9.51 71.98 0.68 -1.08 16 6 C 0.04 0.68 6.28 88.46 0.56 1.24 16 7 N -0.48 -11.13 10.49 -190.30 -2.00 -13.13 16 8 C 0.10 2.13 10.93 84.23 0.92 3.05 16 9 C -0.32 -7.10 6.48 23.88 0.15 -6.95 16 10 C 0.59 15.48 7.79 86.45 0.67 16.15 16 11 O -0.57 -18.47 16.97 -4.33 -0.07 -18.55 16 12 N -0.70 -16.15 5.54 -467.08 -2.59 -18.74 16 13 C 0.14 3.38 5.51 86.38 0.48 3.85 16 14 C -0.10 -2.82 3.63 -10.27 -0.04 -2.85 16 15 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 16 C -0.15 -4.71 7.43 31.12 0.23 -4.48 16 17 C 0.14 5.29 4.56 45.52 0.21 5.50 16 18 H 0.06 2.25 8.10 -2.38 -0.02 2.23 16 19 N -0.72 -35.09 5.31 -320.45 -1.70 -36.79 16 20 C -0.24 -13.08 9.97 84.03 0.84 -12.25 16 21 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 22 C -0.08 -4.33 5.50 84.86 0.47 -3.86 16 23 N -0.97 -58.55 13.06 21.65 0.28 -58.26 16 24 Si 0.97 45.78 29.55 68.60 2.03 47.80 16 25 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 26 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 27 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 28 C -0.13 -3.91 7.39 31.12 0.23 -3.68 16 29 S 0.26 4.77 23.01 -56.49 -1.30 3.47 16 30 H 0.06 0.33 8.09 -2.38 -0.02 0.31 16 31 H 0.06 0.31 7.87 -2.39 -0.02 0.29 16 32 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.09 0.59 7.87 -2.38 -0.02 0.57 16 35 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.20 3.36 7.15 -2.91 -0.02 3.34 16 37 H 0.41 8.12 7.18 -92.71 -0.67 7.45 16 38 H 0.07 1.78 7.84 -2.39 -0.02 1.76 16 39 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.09 2.42 7.90 -2.39 -0.02 2.40 16 42 H 0.37 19.57 7.90 -92.70 -0.73 18.83 16 43 H 0.25 14.71 8.31 -92.70 -0.77 13.94 16 44 H 0.11 2.55 8.10 -2.39 -0.02 2.53 16 45 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -72.88 393.50 -0.54 -73.42 By element: Atomic # 1 Polarization: 31.20 SS G_CDS: -0.38 Total: 30.82 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: 6.72 Total: -1.73 kcal Atomic # 7 Polarization: -120.92 SS G_CDS: -6.00 Total: -126.93 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -1.61 Total: -26.85 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.80 kcal Atomic # 16 Polarization: 4.77 SS G_CDS: -1.30 Total: 3.47 kcal Total: -72.88 -0.54 -73.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086366754.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.766 kcal (2) G-P(sol) polarization free energy of solvation -72.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds