Wall clock time and date at job start Sat Apr 11 2020 05:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 113.99413 * 2 1 4 4 H 1.08998 * 109.47633 * 330.00387 * 3 2 1 5 5 C 1.53008 * 109.46977 * 90.00043 * 3 2 1 6 6 C 1.50699 * 109.46972 * 209.99864 * 3 2 1 7 7 N 1.28648 * 124.71679 * 135.33843 * 6 3 2 8 8 C 1.33569 * 115.76479 * 180.21788 * 7 6 3 9 9 C 1.47264 * 123.14280 * 179.75814 * 8 7 6 10 10 O 1.21633 * 119.99975 * 179.73296 * 9 8 7 11 11 N 1.34777 * 119.99990 * 359.45944 * 9 8 7 12 12 C 1.46499 * 120.00195 * 180.27783 * 11 9 8 13 13 C 1.52990 * 109.47304 * 179.97438 * 12 11 9 14 14 H 1.09002 * 112.85247 * 45.32915 * 13 12 11 15 15 C 1.53784 * 113.61427 * 176.52831 * 13 12 11 16 16 C 1.53781 * 87.08142 * 139.97853 * 15 13 12 17 17 H 1.08999 * 113.61387 * 219.93277 * 16 15 13 18 18 N 1.46501 * 113.61720 * 89.11640 * 16 15 13 19 19 C 1.36938 * 120.00379 * 154.99777 * 18 16 15 20 20 H 1.07995 * 119.99522 * 0.02562 * 19 18 16 21 21 C 1.38815 * 119.99826 * 180.02562 * 19 18 16 22 22 N 1.31623 * 119.99563 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 120.00036 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46931 * 90.00281 * 23 21 19 25 25 H 1.48501 * 109.47160 * 209.99788 * 23 21 19 26 26 H 1.48491 * 109.47478 * 329.99996 * 23 21 19 27 27 C 1.53788 * 113.61565 * 274.13358 * 13 12 11 28 28 C 1.35203 * 113.71186 * 359.48882 * 8 7 6 29 29 S 1.70765 * 124.72199 * 315.02839 * 6 3 2 30 30 H 1.08996 * 109.47116 * 299.99791 * 1 2 3 31 31 H 1.09000 * 109.47134 * 60.00381 * 1 2 3 32 32 H 1.09007 * 109.46532 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46773 * 179.97438 * 5 3 2 34 34 H 1.08991 * 109.47232 * 299.99760 * 5 3 2 35 35 H 1.09000 * 109.47121 * 59.99971 * 5 3 2 36 36 H 0.97000 * 119.99736 * 0.27056 * 11 9 8 37 37 H 1.08998 * 109.46795 * 299.99885 * 12 11 9 38 38 H 1.09002 * 109.47196 * 59.99076 * 12 11 9 39 39 H 1.08998 * 113.61312 * 254.52399 * 15 13 12 40 40 H 1.08991 * 113.61423 * 25.34609 * 15 13 12 41 41 H 0.97000 * 119.99712 * 335.00220 * 18 16 15 42 42 H 0.96993 * 119.99590 * 179.97438 * 22 21 19 43 43 H 1.09004 * 113.61137 * 334.57230 * 27 13 12 44 44 H 1.09001 * 113.61262 * 105.46628 * 27 13 12 45 45 H 1.08009 * 125.58384 * 180.29766 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 -0.5137 5 6 2.2175 1.7714 1.4426 6 6 3.3386 1.2641 -0.7104 7 7 3.7349 2.1311 -1.5741 8 6 4.9451 1.9180 -2.0976 9 6 5.5551 2.8044 -3.1029 10 8 6.6640 2.5584 -3.5380 11 7 4.8823 3.8853 -3.5451 12 6 5.4865 4.7639 -4.5497 13 6 4.5217 5.9057 -4.8752 14 1 4.0794 6.3530 -3.9850 15 6 5.0969 6.9360 -5.8614 16 6 3.7035 6.9754 -6.5109 17 1 3.7304 7.0269 -7.5993 18 7 2.8067 7.9696 -5.9164 19 6 1.7749 8.4880 -6.6524 20 1 1.6219 8.1636 -7.6710 21 6 0.9255 9.4305 -6.0891 22 7 -0.0666 9.9284 -6.7965 23 14 1.1897 9.9911 -4.3270 24 1 2.0983 11.1656 -4.3122 25 1 -0.1152 10.3673 -3.7262 26 1 1.7961 8.8863 -3.5416 27 6 3.4933 5.5522 -5.9627 28 6 5.5602 0.8154 -1.6138 29 16 4.5302 0.0638 -0.4753 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0278 -0.0005 33 1 2.6612 2.7671 1.4425 34 1 1.2568 1.8014 1.9564 35 1 2.8829 1.0776 1.9564 36 1 3.9979 4.0815 -3.1982 37 1 6.4179 5.1746 -4.1601 38 1 5.6920 4.1929 -5.4552 39 1 5.3862 7.8759 -5.3915 40 1 5.8721 6.5319 -6.5123 41 1 2.9439 8.2608 -5.0013 42 1 -0.6603 10.5867 -6.4028 43 1 3.8284 4.7686 -6.6423 44 1 2.4901 5.3765 -5.5743 45 1 6.5417 0.4669 -1.8996 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086366931.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:36 Heat of formation + Delta-G solvation = -3.384254 kcal Electronic energy + Delta-G solvation = -26283.951716 eV Core-core repulsion = 22429.648049 eV Total energy + Delta-G solvation = -3854.303667 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.78945 -39.39252 -38.72247 -38.16069 -34.78327 -33.23825 -32.96087 -30.71128 -30.06806 -28.09930 -27.34622 -25.80969 -25.16925 -24.07895 -23.13698 -21.73590 -21.40379 -20.14423 -19.18578 -18.38786 -17.68074 -16.88844 -16.84849 -16.58864 -15.98766 -15.73771 -15.52632 -15.07320 -14.62986 -14.49005 -14.32075 -13.95282 -13.57567 -13.50296 -13.40765 -13.17175 -12.82887 -12.75437 -12.50113 -12.23951 -12.18095 -12.04596 -11.58221 -11.57290 -11.36425 -10.92611 -10.52547 -10.47284 -10.35931 -10.22902 -10.18271 -9.98875 -9.96603 -9.67422 -9.54468 -9.34752 -9.00915 -8.91476 -7.31378 -5.81073 -3.17094 0.15675 0.86145 1.29950 1.62827 2.83149 3.17912 3.20115 3.33786 3.36753 3.41980 3.86701 4.31342 4.54829 4.54951 4.61379 4.82040 4.85970 4.90717 4.94851 4.95487 4.95734 5.09608 5.15335 5.23870 5.26104 5.38620 5.42140 5.49217 5.51719 5.61453 5.75558 5.85388 5.91518 6.12771 6.23349 6.32530 6.48684 6.51012 6.63481 6.73775 6.89795 7.00576 7.48739 7.97102 8.07508 8.38796 9.16570 9.88863 10.08222 11.37128 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010674 B = 0.002616 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.444276 B =10699.091867 C =12592.874480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.162 3.838 4 H 0.096 0.904 5 C -0.170 4.170 6 C 0.019 3.981 7 N -0.435 5.435 8 C 0.011 3.989 9 C 0.592 3.408 10 O -0.540 6.540 11 N -0.705 5.705 12 C 0.130 3.870 13 C -0.124 4.124 14 H 0.090 0.910 15 C -0.148 4.148 16 C 0.173 3.827 17 H 0.072 0.928 18 N -0.730 5.730 19 C -0.246 4.246 20 H 0.092 0.908 21 C 0.005 3.995 22 N -0.932 5.932 23 Si 0.884 3.116 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.277 1.277 27 C -0.167 4.167 28 C -0.232 4.232 29 S 0.252 5.748 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.411 0.589 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.082 0.918 41 H 0.362 0.638 42 H 0.260 0.740 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.427 -22.749 17.645 29.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.101 3.899 4 H 0.114 0.886 5 C -0.228 4.228 6 C -0.260 4.260 7 N -0.151 5.151 8 C -0.124 4.124 9 C 0.375 3.625 10 O -0.418 6.418 11 N -0.355 5.355 12 C 0.007 3.993 13 C -0.142 4.142 14 H 0.108 0.892 15 C -0.187 4.187 16 C 0.061 3.939 17 H 0.090 0.910 18 N -0.370 5.370 19 C -0.376 4.376 20 H 0.110 0.890 21 C -0.191 4.191 22 N -0.580 5.580 23 Si 0.714 3.286 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.204 1.204 27 C -0.207 4.207 28 C -0.375 4.375 29 S 0.509 5.491 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.110 0.890 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.247 0.753 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.101 0.899 41 H 0.195 0.805 42 H 0.070 0.930 43 H 0.091 0.909 44 H 0.087 0.913 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 7.841 -23.398 17.602 30.312 hybrid contribution -0.165 1.355 0.781 1.573 sum 7.676 -22.043 18.383 29.711 Atomic orbital electron populations 1.22880 0.79538 1.03383 1.00701 1.87885 1.20860 1.26251 1.95138 1.20319 0.88309 0.86273 0.95044 0.88590 1.22304 1.03485 1.02506 0.94515 1.26743 1.02057 0.96589 1.00594 1.66844 1.12788 1.27147 1.08358 1.20401 0.91497 0.97914 1.02607 1.17044 0.84625 0.80434 0.80432 1.90810 1.19291 1.73178 1.58495 1.45894 1.21410 1.25779 1.42439 1.21540 0.96314 0.90471 0.90970 1.22757 0.97355 0.95666 0.98467 0.89176 1.23455 0.98991 0.98142 0.98148 1.21037 0.88314 0.87967 0.96554 0.91014 1.42523 1.33447 1.47702 1.13340 1.19118 1.03386 1.17726 0.97336 0.89016 1.24680 0.97542 0.99162 0.97677 1.69700 1.18895 1.33042 1.36338 0.86562 0.77175 0.78716 0.86140 1.21006 1.21674 1.20371 1.23887 0.98658 1.00585 0.97617 1.26768 1.07242 1.00121 1.03337 1.82914 1.05275 1.26209 1.34675 0.93444 0.93294 0.89009 0.90598 0.90828 0.91308 0.75326 0.91531 0.91141 0.91394 0.89936 0.80521 0.92992 0.90943 0.91303 0.79185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.82 101.05 1.09 1.26 16 2 O -0.38 -3.03 10.17 -35.23 -0.36 -3.39 16 3 C 0.16 1.29 3.23 -27.88 -0.09 1.20 16 4 H 0.10 0.76 7.79 -51.93 -0.40 0.35 16 5 C -0.17 -1.03 9.51 37.16 0.35 -0.68 16 6 C 0.02 0.19 6.30 -13.61 -0.09 0.11 16 7 N -0.43 -5.20 10.12 -8.51 -0.09 -5.29 16 8 C 0.01 0.14 6.70 -84.52 -0.57 -0.42 16 9 C 0.59 8.54 7.80 -12.59 -0.10 8.44 16 10 O -0.54 -9.04 16.71 5.25 0.09 -8.96 16 11 N -0.71 -9.51 5.55 -61.44 -0.34 -9.85 16 12 C 0.13 1.74 5.50 -4.05 -0.02 1.72 16 13 C -0.12 -1.79 3.62 -89.81 -0.33 -2.11 16 14 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 15 C -0.15 -2.22 7.39 -25.92 -0.19 -2.41 16 16 C 0.17 3.24 4.57 -67.03 -0.31 2.93 16 17 H 0.07 1.38 8.10 -51.93 -0.42 0.96 16 18 N -0.73 -16.96 5.11 -52.55 -0.27 -17.23 16 19 C -0.25 -6.86 10.45 -15.06 -0.16 -7.02 16 20 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 21 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 22 N -0.93 -29.08 13.97 55.49 0.78 -28.31 16 23 Si 0.88 21.86 27.74 -169.99 -4.71 17.14 16 24 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 26 H -0.28 -6.44 6.52 56.52 0.37 -6.07 16 27 C -0.17 -2.71 7.44 -25.83 -0.19 -2.90 16 28 C -0.23 -2.36 10.62 29.65 0.31 -2.05 16 29 S 0.25 2.02 22.73 -107.50 -2.44 -0.43 16 30 H 0.05 0.19 7.87 -51.93 -0.41 -0.21 16 31 H 0.05 0.27 8.08 -51.93 -0.42 -0.15 16 32 H 0.09 0.37 8.14 -51.92 -0.42 -0.05 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.35 7.87 -51.93 -0.41 -0.06 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.41 5.32 7.99 -40.82 -0.33 5.00 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.96 7.87 -51.93 -0.41 0.55 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 41 H 0.36 8.25 5.76 -40.82 -0.24 8.02 16 42 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 43 H 0.07 1.07 7.92 -51.93 -0.41 0.65 16 44 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.19 1.69 8.03 -52.48 -0.42 1.27 16 LS Contribution 391.04 15.07 5.89 5.89 Total: -1.00 -33.61 391.04 -8.66 -42.27 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -6.84 Total: 10.03 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -0.37 Total: -1.89 kcal Atomic # 7 Polarization: -60.75 SS G_CDS: 0.08 Total: -60.67 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: -0.27 Total: -12.35 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.71 Total: 17.14 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.44 Total: -0.43 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.61 -8.66 -42.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086366931.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.885 kcal (2) G-P(sol) polarization free energy of solvation -33.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds