Wall clock time and date at job start Sat Apr 11 2020 05:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 H 1.09001 * 109.46882 * 30.00382 * 3 2 1 5 5 C 1.52998 * 109.47307 * 269.99994 * 3 2 1 6 6 C 1.50701 * 109.46777 * 150.00026 * 3 2 1 7 7 N 1.28645 * 124.71998 * 224.71770 * 6 3 2 8 8 C 1.33566 * 115.76574 * 179.82892 * 7 6 3 9 9 C 1.47265 * 123.13769 * 180.22033 * 8 7 6 10 10 O 1.21639 * 119.99569 * 180.23994 * 9 8 7 11 11 N 1.34772 * 120.00693 * 0.23767 * 9 8 7 12 12 C 1.46496 * 120.00659 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47713 * 179.97438 * 12 11 9 14 14 H 1.09005 * 112.84704 * 314.66998 * 13 12 11 15 15 C 1.53785 * 113.61222 * 85.86207 * 13 12 11 16 16 C 1.53952 * 87.01504 * 139.95561 * 15 13 12 17 17 H 1.09007 * 113.74173 * 220.05507 * 16 15 13 18 18 N 1.46503 * 113.54023 * 89.19373 * 16 15 13 19 19 C 1.36935 * 120.00173 * 107.49797 * 18 16 15 20 20 H 1.07994 * 120.00093 * 0.02562 * 19 18 16 21 21 C 1.38813 * 119.99594 * 180.02562 * 19 18 16 22 22 N 1.31626 * 119.99856 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00318 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47126 * 90.00091 * 23 21 19 25 25 H 1.48502 * 109.46854 * 209.99735 * 23 21 19 26 26 H 1.48496 * 109.46993 * 329.99680 * 23 21 19 27 27 C 1.53779 * 113.61667 * 183.47391 * 13 12 11 28 28 C 1.35203 * 113.71648 * 0.45761 * 8 7 6 29 29 S 1.70776 * 124.71905 * 45.02899 * 6 3 2 30 30 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 31 31 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 32 32 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47223 * 300.00490 * 5 3 2 34 34 H 1.08997 * 109.46785 * 60.00007 * 5 3 2 35 35 H 1.09002 * 109.47171 * 179.97438 * 5 3 2 36 36 H 0.97002 * 119.99603 * 0.02562 * 11 9 8 37 37 H 1.08992 * 109.47369 * 300.00639 * 12 11 9 38 38 H 1.09006 * 109.46715 * 59.99749 * 12 11 9 39 39 H 1.08993 * 113.61637 * 254.53449 * 15 13 12 40 40 H 1.08999 * 113.61291 * 25.44044 * 15 13 12 41 41 H 0.97004 * 119.99571 * 287.50267 * 18 16 15 42 42 H 0.96997 * 119.99870 * 179.97438 * 22 21 19 43 43 H 1.08997 * 113.61581 * 334.56493 * 27 13 12 44 44 H 1.09002 * 113.61126 * 105.39293 * 27 13 12 45 45 H 1.08002 * 125.58746 * 179.73400 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2176 1.7715 -1.4425 6 6 3.3386 1.2639 0.7104 7 7 3.7346 2.1304 1.5749 8 6 4.9453 1.9177 2.0975 9 6 5.5550 2.8039 3.1032 10 8 6.6642 2.5580 3.5378 11 7 4.8843 3.8873 3.5421 12 6 5.4906 4.7686 4.5430 13 6 4.5282 5.9137 4.8644 14 1 4.0866 6.3583 3.9725 15 6 3.4996 5.5665 5.9536 16 6 3.7128 6.9914 6.4960 17 1 3.7402 7.0472 7.5843 18 7 2.8179 7.9852 5.8979 19 6 1.7874 8.5085 6.6323 20 1 1.6346 8.1890 7.6525 21 6 0.9391 9.4498 6.0653 22 7 -0.0518 9.9525 6.7709 23 14 1.2030 10.0020 4.3004 24 1 0.4324 9.1217 3.3858 25 1 0.7386 11.4040 4.1457 26 1 2.6476 9.9193 3.9666 27 6 5.1059 6.9467 5.8462 28 6 5.5607 0.8156 1.6131 29 16 4.5308 0.0642 0.4742 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 2.8829 1.0776 -1.9564 34 1 1.2568 1.8015 -1.9562 35 1 2.6605 2.7675 -1.4424 36 1 3.9996 4.0831 3.1958 37 1 5.6961 4.2007 5.4503 38 1 6.4223 5.1766 4.1510 39 1 2.4959 5.3914 5.5664 40 1 3.8334 4.7850 6.6362 41 1 2.9553 8.2725 4.9816 42 1 -0.6442 10.6104 6.3749 43 1 5.8796 6.5432 6.4994 44 1 5.3983 7.8837 5.3722 45 1 6.5423 0.4672 1.8985 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086366932.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:39 Heat of formation + Delta-G solvation = -3.381298 kcal Electronic energy + Delta-G solvation = -26282.217084 eV Core-core repulsion = 22427.913545 eV Total energy + Delta-G solvation = -3854.303539 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.79001 -39.39319 -38.72299 -38.16089 -34.78426 -33.23871 -32.96137 -30.71070 -30.06878 -28.10007 -27.34617 -25.81006 -25.16916 -24.07870 -23.13699 -21.73643 -21.40416 -20.14484 -19.18630 -18.39030 -17.67942 -16.88943 -16.84924 -16.58930 -15.98704 -15.73770 -15.52798 -15.07409 -14.62966 -14.48955 -14.32173 -13.95113 -13.57352 -13.50405 -13.40719 -13.17192 -12.83371 -12.76461 -12.49952 -12.23979 -12.18094 -12.03503 -11.57376 -11.56657 -11.36289 -10.93518 -10.52316 -10.49398 -10.36905 -10.23219 -10.17309 -9.98894 -9.96319 -9.67087 -9.53851 -9.34770 -9.00971 -8.91756 -7.31375 -5.81021 -3.17069 0.15630 0.86110 1.29896 1.62785 2.83203 3.17322 3.20429 3.33927 3.36655 3.42024 3.86646 4.31304 4.54860 4.54983 4.61372 4.82003 4.85964 4.90674 4.94885 4.95345 4.95773 5.09564 5.15378 5.23828 5.26164 5.38003 5.42684 5.49325 5.51571 5.61437 5.74881 5.85193 5.91740 6.12779 6.23600 6.32447 6.48540 6.51035 6.63469 6.73750 6.89481 7.00503 7.48617 7.97096 8.07430 8.38816 9.16596 9.88896 10.08269 11.37153 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010674 B = 0.002616 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.529690 B =10698.886995 C =12593.398033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.162 3.838 4 H 0.096 0.904 5 C -0.170 4.170 6 C 0.020 3.980 7 N -0.435 5.435 8 C 0.011 3.989 9 C 0.592 3.408 10 O -0.540 6.540 11 N -0.705 5.705 12 C 0.130 3.870 13 C -0.124 4.124 14 H 0.090 0.910 15 C -0.166 4.166 16 C 0.173 3.827 17 H 0.071 0.929 18 N -0.730 5.730 19 C -0.246 4.246 20 H 0.092 0.908 21 C 0.005 3.995 22 N -0.932 5.932 23 Si 0.883 3.117 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.277 1.277 27 C -0.148 4.148 28 C -0.232 4.232 29 S 0.252 5.748 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.411 0.589 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.362 0.638 42 H 0.260 0.740 43 H 0.082 0.918 44 H 0.067 0.933 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.386 -22.817 -17.585 29.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.101 3.899 4 H 0.114 0.886 5 C -0.228 4.228 6 C -0.260 4.260 7 N -0.151 5.151 8 C -0.124 4.124 9 C 0.375 3.625 10 O -0.418 6.418 11 N -0.355 5.355 12 C 0.007 3.993 13 C -0.142 4.142 14 H 0.108 0.892 15 C -0.207 4.207 16 C 0.061 3.939 17 H 0.090 0.910 18 N -0.370 5.370 19 C -0.376 4.376 20 H 0.110 0.890 21 C -0.191 4.191 22 N -0.580 5.580 23 Si 0.714 3.286 24 H -0.210 1.210 25 H -0.216 1.216 26 H -0.203 1.203 27 C -0.187 4.187 28 C -0.375 4.375 29 S 0.509 5.491 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.110 0.890 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.247 0.753 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.195 0.805 42 H 0.070 0.930 43 H 0.100 0.900 44 H 0.086 0.914 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 7.803 -23.462 -17.542 30.317 hybrid contribution -0.155 1.361 -0.774 1.573 sum 7.648 -22.102 -18.317 29.707 Atomic orbital electron populations 1.22876 0.79539 1.03382 1.00702 1.87884 1.20858 1.26255 1.95138 1.20320 0.88308 0.86274 0.95044 0.88587 1.22304 1.03492 1.02501 0.94514 1.26744 1.02051 0.96602 1.00571 1.66841 1.12788 1.27137 1.08367 1.20399 0.91486 0.97931 1.02604 1.17045 0.84626 0.80442 0.80424 1.90812 1.19247 1.73249 1.58469 1.45890 1.21416 1.25508 1.42703 1.21540 0.96302 0.90392 0.91065 1.22756 0.97382 0.95621 0.98475 0.89185 1.23884 0.98663 1.00584 0.97599 1.21039 0.88309 0.87988 0.96535 0.91044 1.42521 1.33561 1.47618 1.13315 1.19117 1.03152 1.17933 0.97364 0.89015 1.24680 0.97557 0.99138 0.97682 1.69701 1.18984 1.33004 1.36289 0.86565 0.77572 0.78224 0.86284 1.21048 1.21644 1.20312 1.23457 0.98998 0.98121 0.98173 1.26767 1.07243 1.00110 1.03336 1.82920 1.05266 1.26245 1.34666 0.93288 0.93453 0.89010 0.91303 0.90834 0.90594 0.75326 0.91136 0.91535 0.91267 0.90930 0.80515 0.92993 0.89957 0.91395 0.79188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.82 101.05 1.09 1.26 16 2 O -0.38 -3.03 10.17 -35.23 -0.36 -3.39 16 3 C 0.16 1.28 3.23 -27.88 -0.09 1.19 16 4 H 0.10 0.76 7.79 -51.93 -0.40 0.35 16 5 C -0.17 -1.03 9.51 37.16 0.35 -0.68 16 6 C 0.02 0.19 6.30 -13.61 -0.09 0.11 16 7 N -0.43 -5.18 10.12 -8.51 -0.09 -5.27 16 8 C 0.01 0.14 6.70 -84.52 -0.57 -0.42 16 9 C 0.59 8.51 7.80 -12.59 -0.10 8.41 16 10 O -0.54 -9.03 16.71 5.24 0.09 -8.95 16 11 N -0.70 -9.46 5.55 -61.44 -0.34 -9.80 16 12 C 0.13 1.73 5.50 -4.05 -0.02 1.71 16 13 C -0.12 -1.78 3.62 -89.81 -0.33 -2.10 16 14 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 15 C -0.17 -2.69 7.44 -25.83 -0.19 -2.88 16 16 C 0.17 3.24 4.57 -67.03 -0.31 2.93 16 17 H 0.07 1.37 8.10 -51.92 -0.42 0.95 16 18 N -0.73 -16.96 5.11 -52.55 -0.27 -17.23 16 19 C -0.25 -6.86 10.45 -15.06 -0.16 -7.02 16 20 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 21 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 22 N -0.93 -29.08 13.97 55.49 0.78 -28.31 16 23 Si 0.88 21.85 27.74 -169.99 -4.71 17.13 16 24 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 27 C -0.15 -2.23 7.39 -25.92 -0.19 -2.42 16 28 C -0.23 -2.36 10.62 29.65 0.31 -2.04 16 29 S 0.25 2.01 22.74 -107.50 -2.44 -0.43 16 30 H 0.05 0.27 8.08 -51.93 -0.42 -0.15 16 31 H 0.05 0.19 7.87 -51.93 -0.41 -0.21 16 32 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.35 7.87 -51.93 -0.41 -0.06 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.41 5.28 7.99 -40.82 -0.33 4.95 16 37 H 0.07 0.96 7.88 -51.93 -0.41 0.55 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.07 1.06 7.92 -51.93 -0.41 0.65 16 41 H 0.36 8.25 5.76 -40.82 -0.24 8.02 16 42 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 43 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 44 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.19 1.68 8.03 -52.49 -0.42 1.26 16 LS Contribution 391.04 15.07 5.89 5.89 Total: -1.00 -33.61 391.04 -8.66 -42.28 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -6.84 Total: 9.97 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -0.37 Total: -1.89 kcal Atomic # 7 Polarization: -60.69 SS G_CDS: 0.08 Total: -60.61 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: -0.27 Total: -12.33 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.71 Total: 17.13 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -2.44 Total: -0.43 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.61 -8.66 -42.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086366932.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.896 kcal (2) G-P(sol) polarization free energy of solvation -33.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds