Wall clock time and date at job start Sat Apr 11 2020 05:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 H 1.09001 * 109.46882 * 30.00382 * 3 2 1 5 5 C 1.52998 * 109.47307 * 269.99994 * 3 2 1 6 6 C 1.50701 * 109.46777 * 150.00026 * 3 2 1 7 7 N 1.28645 * 124.71998 * 224.71770 * 6 3 2 8 8 C 1.33566 * 115.76574 * 179.82892 * 7 6 3 9 9 C 1.47265 * 123.13769 * 180.22033 * 8 7 6 10 10 O 1.21639 * 119.99569 * 180.23994 * 9 8 7 11 11 N 1.34772 * 120.00693 * 0.23767 * 9 8 7 12 12 C 1.46496 * 120.00659 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47713 * 179.97438 * 12 11 9 14 14 H 1.09005 * 112.84704 * 314.66998 * 13 12 11 15 15 C 1.53785 * 113.61222 * 85.86207 * 13 12 11 16 16 C 1.53952 * 87.01504 * 139.95561 * 15 13 12 17 17 H 1.09007 * 113.74173 * 220.05507 * 16 15 13 18 18 N 1.46503 * 113.54023 * 89.19373 * 16 15 13 19 19 C 1.36935 * 120.00173 * 107.49797 * 18 16 15 20 20 H 1.07994 * 120.00093 * 0.02562 * 19 18 16 21 21 C 1.38813 * 119.99594 * 180.02562 * 19 18 16 22 22 N 1.31626 * 119.99856 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00318 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47126 * 90.00091 * 23 21 19 25 25 H 1.48502 * 109.46854 * 209.99735 * 23 21 19 26 26 H 1.48496 * 109.46993 * 329.99680 * 23 21 19 27 27 C 1.53779 * 113.61667 * 183.47391 * 13 12 11 28 28 C 1.35203 * 113.71648 * 0.45761 * 8 7 6 29 29 S 1.70776 * 124.71905 * 45.02899 * 6 3 2 30 30 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 31 31 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 32 32 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47223 * 300.00490 * 5 3 2 34 34 H 1.08997 * 109.46785 * 60.00007 * 5 3 2 35 35 H 1.09002 * 109.47171 * 179.97438 * 5 3 2 36 36 H 0.97002 * 119.99603 * 0.02562 * 11 9 8 37 37 H 1.08992 * 109.47369 * 300.00639 * 12 11 9 38 38 H 1.09006 * 109.46715 * 59.99749 * 12 11 9 39 39 H 1.08993 * 113.61637 * 254.53449 * 15 13 12 40 40 H 1.08999 * 113.61291 * 25.44044 * 15 13 12 41 41 H 0.97004 * 119.99571 * 287.50267 * 18 16 15 42 42 H 0.96997 * 119.99870 * 179.97438 * 22 21 19 43 43 H 1.08997 * 113.61581 * 334.56493 * 27 13 12 44 44 H 1.09002 * 113.61126 * 105.39293 * 27 13 12 45 45 H 1.08002 * 125.58746 * 179.73400 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2176 1.7715 -1.4425 6 6 3.3386 1.2639 0.7104 7 7 3.7346 2.1304 1.5749 8 6 4.9453 1.9177 2.0975 9 6 5.5550 2.8039 3.1032 10 8 6.6642 2.5580 3.5378 11 7 4.8843 3.8873 3.5421 12 6 5.4906 4.7686 4.5430 13 6 4.5282 5.9137 4.8644 14 1 4.0866 6.3583 3.9725 15 6 3.4996 5.5665 5.9536 16 6 3.7128 6.9914 6.4960 17 1 3.7402 7.0472 7.5843 18 7 2.8179 7.9852 5.8979 19 6 1.7874 8.5085 6.6323 20 1 1.6346 8.1890 7.6525 21 6 0.9391 9.4498 6.0653 22 7 -0.0518 9.9525 6.7709 23 14 1.2030 10.0020 4.3004 24 1 0.4324 9.1217 3.3858 25 1 0.7386 11.4040 4.1457 26 1 2.6476 9.9193 3.9666 27 6 5.1059 6.9467 5.8462 28 6 5.5607 0.8156 1.6131 29 16 4.5308 0.0642 0.4742 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 2.8829 1.0776 -1.9564 34 1 1.2568 1.8015 -1.9562 35 1 2.6605 2.7675 -1.4424 36 1 3.9996 4.0831 3.1958 37 1 5.6961 4.2007 5.4503 38 1 6.4223 5.1766 4.1510 39 1 2.4959 5.3914 5.5664 40 1 3.8334 4.7850 6.6362 41 1 2.9553 8.2725 4.9816 42 1 -0.6442 10.6104 6.3749 43 1 5.8796 6.5432 6.4994 44 1 5.3983 7.8837 5.3722 45 1 6.5423 0.4672 1.8985 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086366932.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:38 Heat of formation + Delta-G solvation = -27.982615 kcal Electronic energy + Delta-G solvation = -26283.283877 eV Core-core repulsion = 22427.913545 eV Total energy + Delta-G solvation = -3855.370332 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.68295 -40.47323 -39.75042 -38.95724 -36.14735 -35.00289 -33.59130 -32.67286 -30.79240 -29.32029 -27.79793 -26.69648 -26.47348 -25.46074 -24.45141 -23.03265 -22.21827 -21.06388 -20.29261 -19.74198 -19.49106 -17.84337 -17.46377 -17.29094 -16.90974 -16.72636 -16.53976 -16.32392 -16.09538 -15.67097 -15.36829 -15.05846 -14.79841 -14.67692 -14.61964 -14.07844 -14.01999 -13.66798 -13.38320 -13.30136 -13.11764 -13.02885 -12.96616 -12.69829 -12.65095 -12.25953 -12.08089 -11.91497 -11.71597 -11.59901 -11.29570 -11.01046 -10.95450 -10.89808 -10.85857 -10.67561 -10.27107 -9.91566 -9.30870 -8.03688 -5.37319 -0.60707 0.16636 0.55746 0.74434 1.36661 1.40044 1.47379 2.07664 2.19038 2.35443 2.47092 3.20498 3.26731 3.49748 3.57444 3.71503 3.77992 3.97258 4.00543 4.03538 4.08372 4.20846 4.25354 4.34940 4.49135 4.55668 4.60405 4.67702 4.70297 4.74484 4.83532 4.89480 4.91058 4.94534 5.06519 5.17670 5.20345 5.29402 5.42619 5.51983 5.79654 5.99319 6.18353 6.21840 6.49676 7.02340 7.06717 7.83582 8.02169 9.17901 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010674 B = 0.002616 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.529690 B =10698.886995 C =12593.398033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.160 3.840 4 H 0.091 0.909 5 C -0.166 4.166 6 C 0.002 3.998 7 N -0.456 5.456 8 C -0.016 4.016 9 C 0.590 3.410 10 O -0.570 6.570 11 N -0.703 5.703 12 C 0.137 3.863 13 C -0.107 4.107 14 H 0.087 0.913 15 C -0.156 4.156 16 C 0.147 3.853 17 H 0.060 0.940 18 N -0.734 5.734 19 C -0.232 4.232 20 H 0.057 0.943 21 C -0.065 4.065 22 N -0.984 5.984 23 Si 0.955 3.045 24 H -0.277 1.277 25 H -0.296 1.296 26 H -0.251 1.251 27 C -0.130 4.130 28 C -0.237 4.237 29 S 0.323 5.677 30 H 0.044 0.956 31 H 0.061 0.939 32 H 0.104 0.896 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.413 0.587 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.050 0.950 40 H 0.091 0.909 41 H 0.366 0.634 42 H 0.258 0.742 43 H 0.109 0.891 44 H 0.068 0.932 45 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.707 -24.420 -20.153 32.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.315 6.315 3 C 0.099 3.901 4 H 0.109 0.891 5 C -0.224 4.224 6 C -0.277 4.277 7 N -0.173 5.173 8 C -0.152 4.152 9 C 0.374 3.626 10 O -0.450 6.450 11 N -0.352 5.352 12 C 0.014 3.986 13 C -0.126 4.126 14 H 0.105 0.895 15 C -0.196 4.196 16 C 0.037 3.963 17 H 0.078 0.922 18 N -0.376 5.376 19 C -0.363 4.363 20 H 0.075 0.925 21 C -0.256 4.256 22 N -0.635 5.635 23 Si 0.782 3.218 24 H -0.203 1.203 25 H -0.222 1.222 26 H -0.176 1.176 27 C -0.169 4.169 28 C -0.380 4.380 29 S 0.581 5.419 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.123 0.877 33 H 0.092 0.908 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.250 0.750 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.068 0.932 40 H 0.109 0.891 41 H 0.200 0.800 42 H 0.067 0.933 43 H 0.128 0.872 44 H 0.087 0.913 45 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 9.156 -25.111 -20.125 33.457 hybrid contribution -0.582 1.702 0.096 1.801 sum 8.574 -23.409 -20.029 31.979 Atomic orbital electron populations 1.23048 0.78327 1.04441 1.01221 1.87848 1.22193 1.26178 1.95259 1.20400 0.87484 0.86370 0.95817 0.89068 1.22287 1.04459 1.02275 0.93383 1.27160 1.03310 0.96975 1.00258 1.66809 1.12814 1.28362 1.09330 1.20237 0.92448 0.98856 1.03624 1.17312 0.84276 0.80535 0.80453 1.90782 1.20460 1.74061 1.59738 1.45879 1.21453 1.25376 1.42530 1.21438 0.95999 0.89913 0.91239 1.22584 0.96624 0.95653 0.97714 0.89483 1.23748 0.98444 0.99071 0.98382 1.21372 0.90221 0.88468 0.96191 0.92219 1.42451 1.33269 1.48599 1.13247 1.19072 1.03923 1.17083 0.96261 0.92507 1.25513 0.97584 0.99890 1.02603 1.69887 1.20590 1.34343 1.38640 0.85413 0.78880 0.77125 0.80404 1.20346 1.22248 1.17588 1.23346 0.97057 0.98512 0.97997 1.27047 1.07951 0.99593 1.03371 1.82662 1.02919 1.23934 1.32351 0.93709 0.92029 0.87728 0.90750 0.89380 0.90976 0.75031 0.90976 0.90958 0.93159 0.89078 0.80010 0.93308 0.87247 0.91324 0.78268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.82 113.37 1.23 1.46 16 2 O -0.40 -5.55 10.17 -148.98 -1.52 -7.07 16 3 C 0.16 2.31 3.23 29.85 0.10 2.40 16 4 H 0.09 1.36 7.79 -2.39 -0.02 1.35 16 5 C -0.17 -1.69 9.51 71.98 0.68 -1.00 16 6 C 0.00 0.03 6.30 88.58 0.56 0.59 16 7 N -0.46 -10.48 10.12 -180.83 -1.83 -12.31 16 8 C -0.02 -0.39 6.70 40.55 0.27 -0.12 16 9 C 0.59 16.51 7.80 86.62 0.68 17.19 16 10 O -0.57 -18.66 16.71 -4.15 -0.07 -18.73 16 11 N -0.70 -18.03 5.55 -466.53 -2.59 -20.62 16 12 C 0.14 3.37 5.50 86.38 0.47 3.85 16 13 C -0.11 -2.85 3.62 -10.27 -0.04 -2.89 16 14 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 15 C -0.16 -4.86 7.44 31.18 0.23 -4.63 16 16 C 0.15 5.39 4.57 45.58 0.21 5.60 16 17 H 0.06 2.31 8.10 -2.38 -0.02 2.29 16 18 N -0.73 -33.76 5.11 -320.16 -1.64 -35.40 16 19 C -0.23 -13.24 10.45 84.03 0.88 -12.36 16 20 H 0.06 3.56 8.06 -2.91 -0.02 3.53 16 21 C -0.06 -3.81 5.50 84.86 0.47 -3.34 16 22 N -0.98 -63.24 13.97 21.65 0.30 -62.94 16 23 Si 0.95 45.18 27.74 68.60 1.90 47.08 16 24 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 25 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 26 H -0.25 -10.69 6.52 99.48 0.65 -10.04 16 27 C -0.13 -3.60 7.39 31.12 0.23 -3.37 16 28 C -0.24 -4.46 10.62 67.12 0.71 -3.75 16 29 S 0.32 4.46 22.74 -56.49 -1.28 3.18 16 30 H 0.04 0.44 8.08 -2.39 -0.02 0.42 16 31 H 0.06 0.38 7.87 -2.39 -0.02 0.36 16 32 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.07 0.66 8.14 -2.38 -0.02 0.65 16 34 H 0.09 0.63 7.87 -2.39 -0.02 0.61 16 35 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.41 10.23 7.99 -92.71 -0.74 9.49 16 37 H 0.07 1.79 7.88 -2.39 -0.02 1.77 16 38 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 39 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.09 2.51 7.92 -2.39 -0.02 2.49 16 41 H 0.37 16.09 5.76 -92.71 -0.53 15.56 16 42 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 43 H 0.11 2.48 8.10 -2.39 -0.02 2.46 16 44 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.20 3.24 8.03 -2.91 -0.02 3.22 16 Total: -1.00 -73.99 391.04 -0.36 -74.35 By element: Atomic # 1 Polarization: 33.13 SS G_CDS: -0.32 Total: 32.81 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: 6.68 Total: -0.36 kcal Atomic # 7 Polarization: -125.51 SS G_CDS: -5.75 Total: -131.26 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -1.58 Total: -25.80 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.90 Total: 47.08 kcal Atomic # 16 Polarization: 4.46 SS G_CDS: -1.28 Total: 3.18 kcal Total: -73.99 -0.36 -74.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086366932.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.371 kcal (2) G-P(sol) polarization free energy of solvation -73.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds