Wall clock time and date at job start Sat Apr 11 2020 05:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35969 * 116.99983 * 2 1 4 4 C 1.37564 * 120.82580 * 180.02562 * 3 2 1 5 5 C 1.38036 * 114.25306 * 180.02562 * 4 3 2 6 6 C 1.47112 * 127.76470 * 179.97438 * 5 4 3 7 7 O 1.21636 * 119.99488 * 339.33045 * 6 5 4 8 8 N 1.34768 * 120.00362 * 159.33446 * 6 5 4 9 9 C 1.47139 * 120.18707 * 353.22395 * 8 6 5 10 10 C 1.53616 * 107.52451 * 107.87871 * 9 8 6 11 11 C 1.53494 * 108.46152 * 69.77638 * 10 9 8 12 12 C 1.52460 * 109.15276 * 245.78952 * 11 10 9 13 13 C 1.53116 * 109.67350 * 43.93006 * 12 11 10 14 14 C 1.53428 * 109.34773 * 77.03685 * 13 12 11 15 15 H 1.08994 * 109.63520 * 47.35690 * 14 13 12 16 16 N 1.46503 * 109.63172 * 167.94959 * 14 13 12 17 17 C 1.36933 * 120.00113 * 204.99579 * 16 14 13 18 18 H 1.08011 * 120.00030 * 0.02562 * 17 16 14 19 19 C 1.38813 * 120.00330 * 179.97438 * 17 16 14 20 20 N 1.31620 * 120.00383 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 119.99908 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.47248 * 89.99615 * 21 19 17 23 23 H 1.48500 * 109.47260 * 209.99693 * 21 19 17 24 24 H 1.48498 * 109.46906 * 329.99636 * 21 19 17 25 25 C 1.46065 * 120.18860 * 173.24652 * 8 6 5 26 26 S 1.77237 * 104.47791 * 0.23319 * 5 4 3 27 27 N 1.30361 * 120.82218 * 0.02562 * 3 2 1 28 28 H 1.09001 * 109.46944 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47069 * 300.00608 * 1 2 3 30 30 H 1.09000 * 109.46586 * 60.00033 * 1 2 3 31 31 H 1.08004 * 122.87216 * 359.97438 * 4 3 2 32 32 H 1.09000 * 109.84527 * 348.37224 * 9 8 6 33 33 H 1.09005 * 109.90320 * 227.42369 * 9 8 6 34 34 H 1.09003 * 109.63560 * 310.09230 * 10 9 8 35 35 H 1.08992 * 109.63998 * 189.47413 * 10 9 8 36 36 H 1.09004 * 109.52201 * 125.88689 * 11 10 9 37 37 H 1.09002 * 109.52404 * 5.69091 * 11 10 9 38 38 H 1.09007 * 109.44013 * 283.86723 * 12 11 10 39 39 H 1.09004 * 109.44066 * 163.99276 * 12 11 10 40 40 H 1.09001 * 109.48875 * 317.07197 * 13 12 11 41 41 H 1.09001 * 109.51083 * 197.01376 * 13 12 11 42 42 H 0.97001 * 120.00327 * 25.00356 * 16 14 13 43 43 H 0.96992 * 120.00503 * 180.02562 * 20 19 17 44 44 H 1.09003 * 109.35993 * 172.82468 * 25 8 6 45 45 H 1.09001 * 109.36091 * 53.23262 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4189 1.3033 -0.0005 5 6 3.9007 2.5968 0.0001 6 6 5.3050 3.0352 0.0003 7 8 6.1791 2.2754 0.3718 8 7 5.6228 4.2786 -0.4110 9 6 4.5930 5.1490 -0.9999 10 6 4.2706 6.2447 0.0274 11 6 5.4804 7.1834 0.1327 12 6 6.0872 7.0630 1.5261 13 6 6.1672 5.5876 1.9278 14 6 7.3509 4.9283 1.2080 15 1 8.2354 5.5578 1.3053 16 7 7.6122 3.6116 1.7947 17 6 8.8623 3.0593 1.7081 18 1 9.6557 3.5947 1.2077 19 6 9.1101 1.8119 2.2644 20 7 10.3115 1.2809 2.1808 21 14 7.7381 0.8863 3.1306 22 1 7.0219 0.0314 2.1501 23 1 8.3149 0.0346 4.2016 24 1 6.7868 1.8572 3.7286 25 6 6.9917 4.7697 -0.2750 26 16 2.4472 3.6110 0.0084 27 7 1.3521 2.3149 0.0005 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 4.0643 0.4373 -0.0006 32 1 3.6962 4.5679 -1.2151 33 1 4.9697 5.6011 -1.9175 34 1 4.0742 5.7900 0.9984 35 1 3.3969 6.8082 -0.3000 36 1 5.1598 8.2113 -0.0375 37 1 6.2240 6.9044 -0.6138 38 1 5.4638 7.6003 2.2410 39 1 7.0887 7.4932 1.5241 40 1 5.2431 5.0833 1.6454 41 1 6.3086 5.5110 3.0059 42 1 6.8998 3.1309 2.2444 43 1 10.4845 0.4091 2.5692 44 1 7.0805 5.7350 -0.7736 45 1 7.6776 4.0611 -0.7392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088315869.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:43 Heat of formation + Delta-G solvation = 33.705540 kcal Electronic energy + Delta-G solvation = -29182.162614 eV Core-core repulsion = 25329.467281 eV Total energy + Delta-G solvation = -3852.695333 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -40.50744 -40.13036 -37.67555 -36.39979 -35.04507 -33.87051 -32.03322 -31.28072 -29.96550 -28.40749 -27.37155 -26.85257 -24.84406 -23.53396 -22.69655 -21.69082 -20.33880 -19.83193 -19.09252 -18.07857 -17.67152 -17.30247 -16.51475 -16.35151 -15.89931 -15.57559 -15.25902 -14.77750 -14.60201 -14.18720 -14.04486 -13.70523 -13.63310 -13.51208 -13.13373 -12.59131 -12.47198 -12.24082 -12.10324 -12.04388 -11.88730 -11.54577 -11.32195 -11.17741 -11.09688 -10.78258 -10.69395 -10.63750 -10.45786 -10.26465 -9.89786 -9.84188 -9.74590 -9.56995 -9.36948 -8.84425 -8.41341 -8.31011 -6.95539 -5.56879 -2.88068 0.12038 1.04194 1.44254 2.18310 2.76754 3.26966 3.27368 3.57422 3.64599 3.71096 4.36355 4.60750 4.75542 4.77785 4.84921 4.92162 5.00191 5.00395 5.14494 5.17667 5.26216 5.29603 5.31450 5.38557 5.55659 5.60472 5.64754 5.71586 5.75802 5.94273 5.96613 6.01929 6.05420 6.09542 6.23350 6.29351 6.41989 6.53380 6.64641 6.77503 6.87286 6.97013 7.54983 8.15856 8.42770 8.62187 9.43253 10.18048 10.36342 11.61885 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009926 B = 0.005685 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2820.247412 B = 4923.804662 C = 7143.534394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.296 6.296 3 C 0.310 3.690 4 C -0.140 4.140 5 C -0.167 4.167 6 C 0.567 3.433 7 O -0.446 6.446 8 N -0.595 5.595 9 C 0.092 3.908 10 C -0.151 4.151 11 C -0.128 4.128 12 C -0.114 4.114 13 C -0.141 4.141 14 C 0.170 3.830 15 H 0.067 0.933 16 N -0.731 5.731 17 C -0.227 4.227 18 H 0.085 0.915 19 C 0.009 3.991 20 N -0.942 5.942 21 Si 0.892 3.108 22 H -0.279 1.279 23 H -0.303 1.303 24 H -0.286 1.286 25 C 0.091 3.909 26 S 0.287 5.713 27 N -0.536 5.536 28 H 0.101 0.899 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.177 0.823 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.056 0.944 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.363 0.637 43 H 0.255 0.745 44 H 0.078 0.922 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.135 9.665 -7.734 23.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.202 6.202 3 C 0.096 3.904 4 C -0.176 4.176 5 C -0.298 4.298 6 C 0.349 3.651 7 O -0.316 6.316 8 N -0.331 5.331 9 C -0.034 4.034 10 C -0.189 4.189 11 C -0.165 4.165 12 C -0.152 4.152 13 C -0.179 4.179 14 C 0.058 3.942 15 H 0.084 0.916 16 N -0.373 5.373 17 C -0.357 4.357 18 H 0.103 0.897 19 C -0.186 4.186 20 N -0.591 5.591 21 Si 0.724 3.276 22 H -0.205 1.205 23 H -0.230 1.230 24 H -0.213 1.213 25 C -0.034 4.034 26 S 0.437 5.563 27 N -0.376 5.376 28 H 0.119 0.881 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.194 0.806 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.197 0.803 43 H 0.065 0.935 44 H 0.096 0.904 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -20.768 10.456 -7.536 24.442 hybrid contribution -0.371 -2.185 0.552 2.284 sum -21.138 8.271 -6.984 23.749 Atomic orbital electron populations 1.22953 0.76903 1.03470 1.02431 1.86323 1.22851 1.22893 1.88163 1.19882 0.89710 0.85228 0.95561 1.20823 0.92467 0.98896 1.05431 1.26428 0.99853 0.97289 1.06276 1.16813 0.84817 0.82977 0.80495 1.91112 1.46376 1.51458 1.42700 1.47748 1.11003 1.12859 1.61451 1.22421 0.91430 0.92629 0.96888 1.22553 0.98692 0.97147 1.00491 1.21903 0.97388 0.98677 0.98519 1.21458 1.00884 0.96720 0.96138 1.22278 1.00049 0.94989 1.00560 1.20785 0.95159 0.88337 0.89892 0.91553 1.42740 1.10562 1.17005 1.66960 1.18936 0.86656 1.00094 1.30000 0.89679 1.24513 0.95819 0.97136 1.01104 1.69715 1.19996 1.18113 1.51239 0.86418 0.82243 0.80011 0.78921 1.20532 1.23025 1.21268 1.22824 0.80472 0.98761 1.01296 1.85059 0.89728 1.11598 1.69953 1.76333 1.28225 1.01880 1.31151 0.88114 0.92200 0.92218 0.80591 0.90295 0.89608 0.89926 0.90906 0.92267 0.90653 0.92544 0.91698 0.91359 0.92072 0.80266 0.93487 0.90371 0.90277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.43 101.05 1.05 1.40 16 2 O -0.30 -3.82 10.51 -19.64 -0.21 -4.02 16 3 C 0.31 4.33 7.36 -18.42 -0.14 4.20 16 4 C -0.14 -2.10 10.15 -39.90 -0.41 -2.51 16 5 C -0.17 -2.50 6.17 -36.06 -0.22 -2.72 16 6 C 0.57 9.92 6.67 -12.66 -0.08 9.83 16 7 O -0.45 -10.14 12.83 5.25 0.07 -10.08 16 8 N -0.60 -8.58 1.72 -174.27 -0.30 -8.88 16 9 C 0.09 0.93 5.28 -3.37 -0.02 0.91 16 10 C -0.15 -1.37 4.87 -26.16 -0.13 -1.49 16 11 C -0.13 -1.17 5.48 -26.75 -0.15 -1.32 16 12 C -0.11 -1.27 5.67 -26.95 -0.15 -1.42 16 13 C -0.14 -2.10 4.92 -26.45 -0.13 -2.23 16 14 C 0.17 3.09 2.68 -67.49 -0.18 2.91 16 15 H 0.07 1.23 7.83 -51.93 -0.41 0.82 16 16 N -0.73 -17.54 2.88 -53.00 -0.15 -17.70 16 17 C -0.23 -6.53 10.36 -15.06 -0.16 -6.68 16 18 H 0.09 2.58 8.06 -52.48 -0.42 2.16 16 19 C 0.01 0.28 5.50 -17.43 -0.10 0.19 16 20 N -0.94 -30.79 13.97 55.49 0.78 -30.02 16 21 Si 0.89 24.59 26.90 -169.99 -4.57 20.01 16 22 H -0.28 -7.80 7.11 56.52 0.40 -7.40 16 23 H -0.30 -8.40 7.11 56.52 0.40 -7.99 16 24 H -0.29 -7.57 6.52 56.52 0.37 -7.20 16 25 C 0.09 1.43 4.91 -4.06 -0.02 1.41 16 26 S 0.29 3.40 19.13 -107.50 -2.06 1.34 16 27 N -0.54 -7.17 11.03 29.19 0.32 -6.85 16 28 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 30 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 31 H 0.18 2.69 8.06 -52.48 -0.42 2.27 16 32 H 0.08 0.78 3.90 -24.32 -0.09 0.68 16 33 H 0.09 0.71 7.97 -51.93 -0.41 0.30 16 34 H 0.08 0.88 5.20 -51.93 -0.27 0.61 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.70 4.49 -51.93 -0.23 0.47 16 38 H 0.06 0.58 8.14 -51.92 -0.42 0.15 16 39 H 0.06 0.72 7.85 -51.93 -0.41 0.32 16 40 H 0.07 1.02 3.68 -51.93 -0.19 0.83 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 42 H 0.36 9.12 4.44 -40.82 -0.18 8.94 16 43 H 0.26 8.04 8.31 -40.82 -0.34 7.70 16 44 H 0.08 0.96 5.07 -51.93 -0.26 0.70 16 45 H 0.08 1.54 8.04 -51.93 -0.42 1.12 16 LS Contribution 350.02 15.07 5.27 5.27 Total: -1.00 -35.31 350.02 -7.52 -42.83 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -5.85 Total: 5.61 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -0.82 Total: 2.47 kcal Atomic # 7 Polarization: -64.09 SS G_CDS: 0.64 Total: -63.44 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -0.14 Total: -14.10 kcal Atomic # 14 Polarization: 24.59 SS G_CDS: -4.57 Total: 20.01 kcal Atomic # 16 Polarization: 3.40 SS G_CDS: -2.06 Total: 1.34 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.31 -7.52 -42.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088315869.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.540 kcal (2) G-P(sol) polarization free energy of solvation -35.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds