Wall clock time and date at job start Sat Apr 11 2020 05:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35720 * 116.99717 * 2 1 4 4 C 1.39363 * 120.36145 * 359.97438 * 3 2 1 5 5 N 1.31288 * 120.88079 * 179.97438 * 4 3 2 6 6 C 1.32889 * 121.72049 * 0.02562 * 5 4 3 7 7 C 1.47763 * 119.68909 * 179.97438 * 6 5 4 8 8 O 1.21569 * 120.00005 * 180.02562 * 7 6 5 9 9 N 1.34766 * 119.99942 * 0.02562 * 7 6 5 10 10 C 1.46501 * 120.00302 * 179.97438 * 9 7 6 11 11 H 1.09003 * 109.45686 * 325.03215 * 10 9 7 12 12 C 1.53040 * 109.45540 * 85.00198 * 10 9 7 13 13 C 1.53203 * 109.31171 * 181.37660 * 12 10 9 14 14 N 1.46927 * 108.77126 * 305.36329 * 13 12 10 15 15 C 1.36934 * 120.62991 * 233.58619 * 14 13 12 16 16 H 1.07997 * 120.00180 * 152.04536 * 15 14 13 17 17 C 1.38811 * 119.99646 * 331.76423 * 15 14 13 18 18 N 1.31610 * 120.00455 * 342.89215 * 17 15 14 19 19 Si 1.86808 * 119.99663 * 162.88806 * 17 15 14 20 20 H 1.48500 * 109.46827 * 94.08346 * 19 17 15 21 21 H 1.48497 * 109.47204 * 214.08507 * 19 17 15 22 22 H 1.48500 * 109.46891 * 334.08578 * 19 17 15 23 23 C 1.46927 * 118.73869 * 53.86004 * 14 13 12 24 24 C 1.53038 * 109.45257 * 205.06064 * 10 9 7 25 25 H 1.09001 * 109.50219 * 298.57497 * 24 10 9 26 26 O 1.42903 * 109.49297 * 58.67392 * 24 10 9 27 27 C 1.39719 * 120.62583 * 0.26281 * 6 5 4 28 28 F 1.35098 * 120.46716 * 179.74347 * 27 6 5 29 29 C 1.38700 * 119.06580 * 359.46910 * 27 6 5 30 30 H 1.08997 * 109.46987 * 60.00831 * 1 2 3 31 31 H 1.09002 * 109.47038 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47613 * 300.00033 * 1 2 3 33 33 H 1.08000 * 119.55933 * 359.97438 * 4 3 2 34 34 H 0.97004 * 120.00368 * 0.02562 * 9 7 6 35 35 H 1.08995 * 109.50062 * 61.42497 * 12 10 9 36 36 H 1.09002 * 109.52593 * 301.34154 * 12 10 9 37 37 H 1.08992 * 109.58519 * 185.57628 * 13 12 10 38 38 H 1.08997 * 109.58697 * 65.14908 * 13 12 10 39 39 H 0.97008 * 120.00361 * 179.97438 * 18 17 15 40 40 H 1.09004 * 109.58315 * 65.92605 * 23 14 13 41 41 H 1.09004 * 109.58613 * 186.34870 * 23 14 13 42 42 H 0.96707 * 113.99610 * 179.97438 * 26 24 10 43 43 H 1.07996 * 120.78596 * 180.26408 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2934 2.3828 -0.0005 5 7 1.8788 3.5580 0.0000 6 6 3.2021 3.6794 0.0005 7 6 3.8136 5.0246 0.0005 8 8 5.0236 5.1422 0.0005 9 7 3.0300 6.1210 0.0004 10 6 3.6362 7.4547 0.0010 11 1 4.5529 7.4366 0.5903 12 6 3.9621 7.8671 -1.4363 13 6 4.6270 9.2472 -1.4290 14 7 3.7544 10.1887 -0.7143 15 6 3.3660 11.3633 -1.3014 16 1 2.4288 11.8220 -1.0230 17 6 4.1797 11.9672 -2.2500 18 7 5.4456 11.6207 -2.3478 19 14 3.4779 13.2719 -3.3879 20 1 3.7234 14.6173 -2.8093 21 1 4.1360 13.1766 -4.7157 22 1 2.0165 13.0590 -3.5433 23 6 3.3114 9.8488 0.6448 24 6 2.6568 8.4594 0.6121 25 1 1.7495 8.4961 0.0090 26 8 2.3293 8.0567 1.9435 27 6 4.0207 2.5472 -0.0050 28 9 5.3657 2.6744 -0.0097 29 6 3.4332 1.2908 0.0002 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 0.2150 2.3248 -0.0014 34 1 2.0645 6.0272 0.0008 35 1 3.0426 7.9094 -2.0201 36 1 4.6411 7.1385 -1.8793 37 1 4.7712 9.5888 -2.4540 38 1 5.5906 9.1860 -0.9232 39 1 6.0142 12.0425 -3.0110 40 1 4.1700 9.8356 1.3163 41 1 2.5873 10.5875 0.9886 42 1 1.7114 8.6496 2.3930 43 1 4.0394 0.3971 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090312763.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:54 Heat of formation + Delta-G solvation = -98.483768 kcal Electronic energy + Delta-G solvation = -29560.912199 eV Core-core repulsion = 25136.271532 eV Total energy + Delta-G solvation = -4424.640667 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.16884 -41.17304 -39.72764 -38.51820 -37.64376 -35.36788 -34.31595 -32.82610 -31.92626 -30.97783 -29.81141 -28.52726 -28.07833 -25.51744 -24.64164 -23.48678 -22.38859 -21.88178 -20.54287 -19.60813 -18.98923 -18.30861 -17.90490 -17.00652 -16.67363 -16.59510 -16.43688 -15.89030 -15.74623 -15.37751 -15.07901 -14.76779 -14.56625 -14.04792 -13.87912 -13.69326 -13.52489 -13.49122 -13.18598 -12.99661 -12.73414 -12.57913 -12.25661 -12.13675 -11.94628 -11.53889 -11.09987 -10.85649 -10.66984 -10.41097 -10.28796 -10.26014 -9.95044 -9.94016 -9.85015 -9.68264 -9.42284 -9.02375 -8.68379 -8.42308 -6.74665 -5.83282 -3.27589 0.22855 0.56123 2.39462 2.60269 3.16751 3.35410 3.42731 3.44627 3.52841 3.75243 3.83456 4.00636 4.36136 4.41088 4.49281 4.53426 4.57310 4.59474 4.87887 4.94455 5.21926 5.33168 5.34703 5.40904 5.50759 5.59898 5.79256 5.91616 6.01024 6.14217 6.34961 6.49994 6.51248 6.55203 6.69676 6.80274 6.88000 7.17327 7.31297 7.62667 7.74763 7.77878 7.96358 8.39049 8.40101 9.14866 9.77315 10.33658 11.25247 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019850 B = 0.002489 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.207789 B =11248.080840 C =11515.120930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.303 6.303 3 C 0.128 3.872 4 C 0.009 3.991 5 N -0.390 5.390 6 C 0.015 3.985 7 C 0.568 3.432 8 O -0.525 6.525 9 N -0.692 5.692 10 C 0.161 3.839 11 H 0.090 0.910 12 C -0.147 4.147 13 C 0.172 3.828 14 N -0.588 5.588 15 C -0.259 4.259 16 H 0.067 0.933 17 C 0.005 3.995 18 N -0.898 5.898 19 Si 0.903 3.097 20 H -0.287 1.287 21 H -0.289 1.289 22 H -0.279 1.279 23 C 0.121 3.879 24 C 0.080 3.920 25 H 0.057 0.943 26 O -0.570 6.570 27 C 0.155 3.845 28 F -0.096 7.096 29 C -0.161 4.161 30 H 0.064 0.936 31 H 0.108 0.892 32 H 0.064 0.936 33 H 0.173 0.827 34 H 0.406 0.594 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.093 0.907 38 H 0.025 0.975 39 H 0.255 0.745 40 H 0.030 0.970 41 H 0.060 0.940 42 H 0.373 0.627 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.971 -22.817 5.312 26.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.214 6.214 3 C 0.078 3.922 4 C -0.154 4.154 5 N -0.102 5.102 6 C -0.125 4.125 7 C 0.352 3.648 8 O -0.400 6.400 9 N -0.342 5.342 10 C 0.058 3.942 11 H 0.108 0.892 12 C -0.187 4.187 13 C 0.046 3.954 14 N -0.312 5.312 15 C -0.389 4.389 16 H 0.084 0.916 17 C -0.194 4.194 18 N -0.542 5.542 19 Si 0.733 3.267 20 H -0.214 1.214 21 H -0.215 1.215 22 H -0.204 1.204 23 C -0.007 4.007 24 C 0.019 3.981 25 H 0.075 0.925 26 O -0.375 6.375 27 C 0.132 3.868 28 F -0.074 7.074 29 C -0.188 4.188 30 H 0.083 0.917 31 H 0.126 0.874 32 H 0.082 0.918 33 H 0.190 0.810 34 H 0.241 0.759 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.111 0.889 38 H 0.043 0.957 39 H 0.066 0.934 40 H 0.048 0.952 41 H 0.079 0.921 42 H 0.220 0.780 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -10.905 -22.544 5.051 25.547 hybrid contribution -0.711 0.355 -0.483 0.930 sum -11.616 -22.189 4.567 25.459 Atomic orbital electron populations 1.23270 0.76962 1.05009 1.02225 1.86065 1.22457 1.25483 1.87408 1.20001 0.92059 0.86091 0.94011 1.23061 1.01081 0.86434 1.04826 1.67500 1.09428 1.26781 1.06463 1.21430 0.89296 0.94395 1.07399 1.17468 0.86483 0.83027 0.77870 1.90874 1.13078 1.86097 1.50000 1.45881 1.10472 1.05376 1.72436 1.21092 0.96521 0.78877 0.97736 0.89230 1.22618 1.01467 1.00750 0.93884 1.20827 0.90815 0.84172 0.99627 1.44063 1.57660 1.19381 1.10112 1.19147 1.00806 0.99309 1.19599 0.91561 1.25085 0.94649 0.98145 1.01545 1.70035 1.03778 1.44636 1.35750 0.86279 0.78523 0.81444 0.80478 1.21388 1.21478 1.20386 1.21620 0.97456 0.92398 0.89178 1.22863 0.97069 0.95763 0.82367 0.92458 1.86492 1.68297 1.54177 1.28502 1.18260 0.78884 0.92723 0.96928 1.91663 1.27086 1.96399 1.92220 1.20826 0.92896 0.97744 1.07316 0.91747 0.87388 0.91762 0.81049 0.75909 0.92230 0.91853 0.88902 0.95713 0.93442 0.95233 0.92110 0.78025 0.82003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.06 9.82 101.05 0.99 1.05 16 2 O -0.30 -2.09 10.50 -18.87 -0.20 -2.28 16 3 C 0.13 1.09 6.72 -38.86 -0.26 0.83 16 4 C 0.01 0.07 10.21 -17.37 -0.18 -0.10 16 5 N -0.39 -4.67 9.52 -9.63 -0.09 -4.77 16 6 C 0.01 0.21 6.75 -82.96 -0.56 -0.35 16 7 C 0.57 9.94 7.76 -12.37 -0.10 9.84 16 8 O -0.52 -10.90 14.97 5.31 0.08 -10.82 16 9 N -0.69 -11.51 4.91 -54.74 -0.27 -11.78 16 10 C 0.16 3.04 2.12 -67.89 -0.14 2.89 16 11 H 0.09 1.91 7.58 -51.93 -0.39 1.52 16 12 C -0.15 -2.98 5.65 -26.61 -0.15 -3.13 16 13 C 0.17 4.16 5.30 -3.70 -0.02 4.14 16 14 N -0.59 -14.52 2.99 -172.05 -0.51 -15.04 16 15 C -0.26 -6.96 9.58 -15.06 -0.14 -7.10 16 16 H 0.07 1.72 7.89 -52.49 -0.41 1.31 16 17 C 0.01 0.14 4.91 -17.43 -0.09 0.05 16 18 N -0.90 -25.98 11.21 55.49 0.62 -25.35 16 19 Si 0.90 21.35 29.59 -169.99 -5.03 16.32 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 C 0.12 2.49 6.17 -3.49 -0.02 2.47 16 24 C 0.08 1.41 3.16 -26.39 -0.08 1.32 16 25 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 26 O -0.57 -8.84 13.16 -35.23 -0.46 -9.31 16 27 C 0.16 2.02 7.31 -38.86 -0.28 1.73 16 28 F -0.10 -1.43 15.54 2.25 0.03 -1.40 16 29 C -0.16 -1.56 10.10 -39.11 -0.40 -1.96 16 30 H 0.06 0.13 7.67 -51.93 -0.40 -0.27 16 31 H 0.11 0.13 8.14 -51.93 -0.42 -0.30 16 32 H 0.06 0.13 7.67 -51.93 -0.40 -0.27 16 33 H 0.17 0.89 6.31 -52.49 -0.33 0.55 16 34 H 0.41 6.00 7.92 -40.82 -0.32 5.68 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 37 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 38 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 40 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 42 H 0.37 4.14 9.09 45.56 0.41 4.55 16 43 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 362.60 15.07 5.46 5.46 Total: -1.00 -33.81 362.60 -6.46 -40.27 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -4.67 Total: 7.00 kcal Atomic # 6 Polarization: 13.12 SS G_CDS: -1.43 Total: 11.69 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: -0.25 Total: -56.94 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.58 Total: -22.41 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.03 Total: -1.40 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.81 -6.46 -40.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090312763.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.215 kcal (2) G-P(sol) polarization free energy of solvation -33.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds