Wall clock time and date at job start Sat Apr 11 2020 05:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47104 * 22.18800 * 3 2 1 5 5 C 1.34776 * 119.99811 * 179.97438 * 4 3 2 6 6 O 1.21277 * 120.00138 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.99804 * 179.97438 * 5 4 3 8 8 H 1.08992 * 109.47284 * 300.00452 * 7 5 4 9 9 C 1.53002 * 109.46958 * 60.00369 * 7 5 4 10 10 N 1.46906 * 109.46922 * 180.02562 * 7 5 4 11 11 C 1.46904 * 110.99841 * 299.30291 * 10 7 5 12 12 C 1.53240 * 109.33739 * 172.74962 * 11 10 7 13 13 N 1.47085 * 108.52154 * 53.82625 * 12 11 10 14 14 C 1.34773 * 120.87493 * 128.79510 * 13 12 11 15 15 O 1.21280 * 119.99552 * 180.02562 * 14 13 12 16 16 C 1.50699 * 120.00579 * 0.02562 * 14 13 12 17 17 S 1.81000 * 109.47400 * 179.97438 * 16 14 13 18 18 C 1.76193 * 100.00188 * 179.97438 * 17 16 14 19 19 H 1.08007 * 119.99918 * 0.02562 * 18 17 16 20 20 C 1.38800 * 120.00368 * 180.02562 * 18 17 16 21 21 N 1.31626 * 119.99616 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00217 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47128 * 90.00042 * 22 20 18 24 24 H 1.48499 * 109.47303 * 209.99935 * 22 20 18 25 25 H 1.48496 * 109.47264 * 330.00058 * 22 20 18 26 26 C 1.47075 * 118.23896 * 308.81668 * 13 12 11 27 27 C 1.46896 * 110.99895 * 175.00371 * 10 7 5 28 28 H 4.40642 * 5.51374 * 179.97438 * 4 1 2 29 29 H 1.09000 * 109.47095 * 262.18831 * 3 2 1 30 30 H 1.09001 * 109.47037 * 142.18488 * 3 2 1 31 31 H 0.96993 * 120.00140 * 0.02562 * 4 3 2 32 32 H 1.09001 * 109.47142 * 59.99773 * 9 7 5 33 33 H 1.09004 * 109.47006 * 179.97438 * 9 7 5 34 34 H 1.09002 * 109.47097 * 299.99808 * 9 7 5 35 35 H 1.09000 * 109.49336 * 292.70649 * 11 10 7 36 36 H 1.08991 * 109.49364 * 52.78839 * 11 10 7 37 37 H 1.09007 * 109.62526 * 294.11763 * 12 11 10 38 38 H 1.08997 * 109.79066 * 173.63286 * 12 11 10 39 39 H 1.09001 * 109.46965 * 300.00247 * 16 14 13 40 40 H 1.09005 * 109.47217 * 59.99696 * 16 14 13 41 41 H 0.97001 * 120.00144 * 180.02562 * 21 20 18 42 42 H 1.09004 * 109.62535 * 291.47568 * 26 13 12 43 43 H 1.08998 * 109.62753 * 170.89763 * 26 13 12 44 44 H 1.08999 * 109.49203 * 307.21161 * 27 10 7 45 45 H 1.08998 * 109.49713 * 67.26346 * 27 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.2781 -0.5216 5 6 4.4601 -1.5053 -0.6151 6 8 5.2478 -0.6511 -0.2679 7 6 4.9630 -2.8209 -1.1511 8 1 4.6004 -3.6326 -0.5206 9 6 4.4525 -3.0181 -2.5799 10 7 6.4321 -2.8202 -1.1512 11 6 6.9579 -1.7471 -2.0057 12 6 8.4788 -1.6641 -1.8379 13 7 9.0500 -2.9960 -2.0896 14 6 10.0683 -3.1591 -2.9573 15 8 10.5268 -4.2647 -3.1531 16 6 10.6372 -1.9679 -3.6841 17 16 11.9824 -2.5082 -4.7679 18 6 12.4482 -0.9617 -5.4720 19 1 11.9289 -0.0593 -5.1846 20 6 13.4824 -0.9030 -6.3958 21 7 14.1148 -2.0028 -6.7463 22 14 13.9766 0.7367 -7.1417 23 1 15.0249 1.3676 -6.3000 24 1 14.5069 0.5178 -8.5114 25 1 12.7909 1.6285 -7.2067 26 6 8.4800 -4.1450 -1.3698 27 6 6.9591 -4.1302 -1.5560 28 1 -1.0498 -0.0004 0.0000 29 1 3.0093 0.1405 1.0181 30 1 3.0089 0.8127 -0.6301 31 1 2.5049 -1.9609 -0.8004 32 1 4.8150 -2.2063 -3.2106 33 1 4.8166 -3.9695 -2.9678 34 1 3.3625 -3.0188 -2.5795 35 1 6.7180 -1.9609 -3.0472 36 1 6.5077 -0.7978 -1.7158 37 1 8.7185 -1.3489 -0.8223 38 1 8.8902 -0.9488 -2.5500 39 1 9.8551 -1.4990 -4.2812 40 1 11.0210 -1.2495 -2.9597 41 1 14.8378 -1.9619 -7.3917 42 1 8.7199 -4.0681 -0.3093 43 1 8.8896 -5.0704 -1.7746 44 1 6.5097 -4.9092 -0.9401 45 1 6.7187 -4.3111 -2.6037 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112630278.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:01 Heat of formation + Delta-G solvation = -18.255393 kcal Electronic energy + Delta-G solvation = -26727.664676 eV Core-core repulsion = 22872.716148 eV Total energy + Delta-G solvation = -3854.948528 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.66190 -40.76363 -38.89309 -36.52197 -36.06513 -34.59437 -33.68842 -32.76725 -31.75499 -30.50345 -28.15308 -27.78984 -27.45291 -24.86049 -24.77041 -22.36130 -21.34479 -20.24083 -19.67595 -19.25192 -18.24736 -17.92506 -17.28247 -16.95862 -16.87736 -16.81056 -16.56090 -16.03727 -15.89765 -15.81773 -15.48652 -15.08610 -14.77172 -14.56019 -14.48549 -14.31512 -14.26852 -13.58902 -13.43943 -13.21099 -13.18053 -13.16731 -12.90064 -12.85824 -12.61836 -12.33232 -12.13706 -11.97047 -11.74855 -11.71994 -11.43901 -11.15122 -10.90433 -10.66703 -10.28599 -10.12394 -9.81756 -9.27317 -8.68249 -8.35352 -6.13764 1.23923 1.38742 1.41743 1.44429 1.54381 1.55521 1.57893 1.83472 2.05940 2.26467 2.39195 2.89219 2.98578 3.23603 3.35808 3.62236 3.68554 3.83225 3.98932 4.00351 4.16312 4.18915 4.20529 4.29510 4.37293 4.43323 4.50872 4.53866 4.56162 4.63654 4.72379 4.79349 4.87901 4.88944 5.00326 5.00877 5.18518 5.32429 5.40941 5.48905 5.85303 5.95101 6.19022 6.27403 6.49864 6.57731 7.05684 7.10584 7.20210 8.73925 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016832 B = 0.002188 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.119519 B =12791.478902 C =13970.340241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.246 4.246 3 C 0.233 3.767 4 N -0.716 5.716 5 C 0.521 3.479 6 O -0.555 6.555 7 C 0.069 3.931 8 H 0.139 0.861 9 C -0.181 4.181 10 N -0.523 5.523 11 C 0.038 3.962 12 C 0.113 3.887 13 N -0.609 5.609 14 C 0.534 3.466 15 O -0.564 6.564 16 C -0.125 4.125 17 S -0.146 6.146 18 C -0.547 4.547 19 H 0.081 0.919 20 C 0.014 3.986 21 N -0.910 5.910 22 Si 0.998 3.002 23 H -0.268 1.268 24 H -0.276 1.276 25 H -0.259 1.259 26 C 0.113 3.887 27 C 0.051 3.949 28 H 0.251 0.749 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.415 0.585 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.034 0.966 36 H 0.108 0.892 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.272 0.728 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.119 0.881 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.619 1.281 14.897 34.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.247 4.247 3 C 0.110 3.890 4 N -0.370 5.370 5 C 0.308 3.692 6 O -0.433 6.433 7 C -0.042 4.042 8 H 0.157 0.843 9 C -0.240 4.240 10 N -0.248 5.248 11 C -0.090 4.090 12 C -0.010 4.010 13 N -0.343 5.343 14 C 0.322 3.678 15 O -0.443 6.443 16 C -0.276 4.276 17 S 0.081 5.919 18 C -0.695 4.695 19 H 0.099 0.901 20 C -0.191 4.191 21 N -0.546 5.546 22 Si 0.820 3.180 23 H -0.193 1.193 24 H -0.201 1.201 25 H -0.183 1.183 26 C -0.009 4.009 27 C -0.077 4.077 28 H 0.267 0.733 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.252 0.748 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.110 0.890 35 H 0.052 0.948 36 H 0.125 0.875 37 H 0.100 0.900 38 H 0.109 0.891 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.081 0.919 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.137 0.863 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -30.080 0.280 15.260 33.731 hybrid contribution -0.470 1.589 -1.251 2.077 sum -30.550 1.870 14.009 33.661 Atomic orbital electron populations 1.25842 0.96738 0.95805 0.98407 1.23004 0.94516 1.04277 1.02873 1.17959 0.83716 0.86727 1.00597 1.45870 1.06824 1.18294 1.66044 1.20752 0.81888 0.89220 0.77338 1.90668 1.55750 1.47578 1.49291 1.21734 0.88235 0.95899 0.98339 0.84342 1.22415 1.03489 1.03022 0.95110 1.61844 1.05829 1.03910 1.53202 1.22661 0.94208 0.97490 0.94678 1.21956 0.93213 0.82975 1.02855 1.48191 1.33725 1.10231 1.42174 1.20080 0.79454 0.89364 0.78885 1.90663 1.60777 1.27592 1.65250 1.23369 1.02317 0.99865 1.02058 1.85519 1.39614 1.15344 1.51447 1.23193 1.22620 0.93978 1.29723 0.90064 1.26122 0.94988 1.01938 0.96017 1.70179 1.22463 1.29770 1.32233 0.84956 0.78836 0.76815 0.77393 1.19294 1.20132 1.18253 1.21802 0.93063 0.89001 0.97013 1.22505 0.93678 0.91363 1.00173 0.73250 0.89442 0.89666 0.74773 0.93136 0.90635 0.89013 0.94752 0.87456 0.89990 0.89131 0.87762 0.87772 0.91947 0.89929 0.89959 0.86327 0.94191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 19.25 74.32 1.43 0.44 16 2 C -0.25 -2.49 13.46 31.12 0.42 -2.07 16 3 C 0.23 2.66 6.15 84.57 0.52 3.18 16 4 N -0.72 -7.21 5.43 -472.13 -2.56 -9.77 16 5 C 0.52 8.02 6.82 87.66 0.60 8.62 16 6 O -0.56 -13.17 13.91 -3.02 -0.04 -13.21 16 7 C 0.07 0.83 2.77 44.17 0.12 0.95 16 8 H 0.14 0.93 8.06 -2.39 -0.02 0.91 16 9 C -0.18 -1.76 8.41 71.98 0.61 -1.16 16 10 N -0.52 -9.39 4.41 -874.42 -3.85 -13.25 16 11 C 0.04 0.82 4.58 86.38 0.40 1.21 16 12 C 0.11 2.80 6.50 86.35 0.56 3.36 16 13 N -0.61 -18.22 3.01 -817.94 -2.46 -20.68 16 14 C 0.53 21.40 7.73 87.66 0.68 22.08 16 15 O -0.56 -27.22 15.31 -3.03 -0.05 -27.26 16 16 C -0.13 -5.31 4.52 71.24 0.32 -4.99 16 17 S -0.15 -8.37 20.57 -56.49 -1.16 -9.53 16 18 C -0.55 -31.96 9.50 67.95 0.65 -31.31 16 19 H 0.08 4.43 7.80 -2.91 -0.02 4.40 16 20 C 0.01 0.82 5.49 84.86 0.47 1.29 16 21 N -0.91 -56.56 13.22 21.65 0.29 -56.28 16 22 Si 1.00 44.31 29.55 68.60 2.03 46.34 16 23 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 24 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 25 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 26 C 0.11 2.76 6.60 86.35 0.57 3.33 16 27 C 0.05 0.88 5.14 86.38 0.44 1.32 16 28 H 0.25 -0.24 7.80 -4.43 -0.03 -0.27 16 29 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.42 2.01 7.87 -92.71 -0.73 1.28 16 32 H 0.05 0.69 6.56 -2.39 -0.02 0.68 16 33 H 0.07 0.75 6.69 -2.38 -0.02 0.74 16 34 H 0.09 0.42 7.56 -2.39 -0.02 0.40 16 35 H 0.03 0.76 6.71 -2.39 -0.02 0.75 16 36 H 0.11 2.49 5.30 -2.39 -0.01 2.48 16 37 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 38 H 0.09 2.25 6.02 -2.39 -0.01 2.24 16 39 H 0.10 4.06 7.66 -2.39 -0.02 4.04 16 40 H 0.10 4.09 8.00 -2.39 -0.02 4.08 16 41 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 42 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.08 2.28 7.06 -2.39 -0.02 2.26 16 44 H 0.12 1.31 8.05 -2.39 -0.02 1.30 16 45 H 0.04 0.75 6.81 -2.39 -0.02 0.73 16 Total: -1.00 -82.83 382.49 0.24 -82.58 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 0.28 Total: 14.80 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: 7.78 Total: 6.25 kcal Atomic # 7 Polarization: -91.38 SS G_CDS: -8.59 Total: -99.98 kcal Atomic # 8 Polarization: -40.38 SS G_CDS: -0.09 Total: -40.47 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.16 Total: -9.53 kcal Total: -82.83 0.24 -82.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112630278.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.326 kcal (2) G-P(sol) polarization free energy of solvation -82.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds