Wall clock time and date at job start Sat Apr 11 2020 05:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46757 * 124.35298 * 2 1 4 4 C 1.54484 * 105.47667 * 197.03534 * 3 2 1 5 5 C 1.54626 * 101.76581 * 334.58579 * 4 3 2 6 6 H 1.09000 * 110.59824 * 143.52916 * 5 4 3 7 7 N 1.46896 * 110.48725 * 266.11879 * 5 4 3 8 8 C 1.48559 * 110.99985 * 291.64487 * 7 5 4 9 9 C 1.54428 * 104.54092 * 200.94566 * 8 7 5 10 10 H 1.08992 * 118.16524 * 244.18390 * 9 8 7 11 11 C 1.54128 * 105.09851 * 23.90176 * 9 8 7 12 12 H 1.09002 * 123.03973 * 221.57211 * 11 9 8 13 13 C 1.48559 * 110.99908 * 176.22799 * 7 5 4 14 14 C 1.53006 * 59.75849 * 114.03711 * 11 9 8 15 15 H 1.08994 * 117.44331 * 252.37910 * 14 11 9 16 16 N 1.46496 * 117.44260 * 107.61904 * 14 11 9 17 17 C 1.34774 * 119.99544 * 154.84103 * 16 14 11 18 18 O 1.21279 * 120.00472 * 0.02562 * 17 16 14 19 19 C 1.50706 * 120.00020 * 180.02562 * 17 16 14 20 20 S 1.81002 * 109.47200 * 179.97438 * 19 17 16 21 21 C 1.76198 * 99.99878 * 179.97438 * 20 19 17 22 22 H 1.08006 * 120.00031 * 359.97438 * 21 20 19 23 23 C 1.38801 * 120.00096 * 180.02562 * 21 20 19 24 24 N 1.31631 * 119.99737 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 119.99933 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47767 * 59.99657 * 25 23 21 27 27 H 1.48505 * 109.46944 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.46958 * 299.99344 * 25 23 21 29 29 C 1.34426 * 124.34658 * 180.02562 * 2 1 3 30 30 O 1.21277 * 124.94296 * 359.53361 * 29 2 1 31 31 H 1.09006 * 109.47377 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47111 * 299.99819 * 1 2 3 33 33 H 1.09000 * 109.47260 * 59.99999 * 1 2 3 34 34 H 1.08999 * 110.24596 * 316.03749 * 3 2 1 35 35 H 1.09002 * 110.24345 * 77.95083 * 3 2 1 36 36 H 1.08995 * 110.97122 * 216.46272 * 4 3 2 37 37 H 1.08997 * 110.96585 * 92.70355 * 4 3 2 38 38 H 1.09005 * 110.41200 * 319.74144 * 8 7 5 39 39 H 1.09007 * 110.40826 * 82.06139 * 8 7 5 40 40 H 1.08990 * 110.41538 * 40.26245 * 13 7 5 41 41 H 1.09004 * 110.51351 * 277.86282 * 13 7 5 42 42 H 0.96994 * 120.00700 * 334.84223 * 16 14 11 43 43 H 1.09001 * 109.46953 * 299.99667 * 19 17 16 44 44 H 1.09000 * 109.47318 * 59.99264 * 19 17 16 45 45 H 0.97001 * 119.99701 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2931 1.2116 0.0000 4 6 3.7009 0.7487 -0.4362 5 6 3.6898 -0.7379 -0.0109 6 1 4.2328 -1.3475 -0.7332 7 7 4.2692 -0.8935 1.3300 8 6 5.7261 -0.6033 1.3173 9 6 6.2721 -1.3049 2.5800 10 1 6.7003 -0.6857 3.3681 11 6 5.2575 -2.4235 2.8882 12 1 4.9225 -2.6602 3.8981 13 6 4.1820 -2.3043 1.7872 14 6 6.6860 -2.7736 2.4663 15 1 6.8288 -3.1791 1.4647 16 7 7.5833 -3.3038 3.4958 17 6 8.6257 -4.0827 3.1449 18 8 8.8211 -4.3444 1.9769 19 6 9.5485 -4.6287 4.2039 20 16 10.8382 -5.6299 3.4226 21 6 11.7465 -6.1258 4.8486 22 1 11.4334 -5.7985 5.8291 23 6 12.8650 -6.9362 4.7119 24 7 13.2469 -7.3347 3.5169 25 14 13.8275 -7.4625 6.2238 26 1 12.9390 -8.2281 7.1346 27 1 14.9685 -8.3187 5.8109 28 1 14.3400 -6.2596 6.9278 29 6 2.2234 -1.1099 -0.0005 30 8 1.7945 -2.2443 0.0071 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.8982 1.9384 -0.7099 35 1 2.3297 1.6434 1.0002 36 1 4.4754 1.3009 0.0960 37 1 3.8264 0.8450 -1.5146 38 1 6.1885 -1.0177 0.4214 39 1 5.9002 0.4714 1.3717 40 1 4.4027 -2.9848 0.9650 41 1 3.1937 -2.5125 2.1972 42 1 7.4273 -3.0942 4.4299 43 1 10.0081 -3.8024 4.7463 44 1 8.9795 -5.2471 4.8981 45 1 14.0283 -7.9013 3.4213 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113898774.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:15 Heat of formation + Delta-G solvation = -44.609015 kcal Electronic energy + Delta-G solvation = -26215.268998 eV Core-core repulsion = 22359.177692 eV Total energy + Delta-G solvation = -3856.091307 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.01293 -41.00618 -39.89638 -37.58510 -36.28418 -34.58623 -34.21582 -32.16277 -30.51606 -29.62981 -28.17054 -27.67810 -27.31646 -24.57233 -22.60158 -22.04910 -21.80124 -21.14366 -20.32650 -19.81873 -18.25348 -17.93899 -17.77259 -17.63974 -16.87659 -16.66527 -16.41553 -16.22686 -15.76032 -15.39052 -15.18602 -14.87998 -14.56242 -14.52277 -14.44005 -14.09269 -13.93334 -13.72809 -13.62591 -13.36957 -13.22273 -13.17212 -12.95328 -12.86362 -12.62561 -12.54499 -12.40504 -12.04470 -11.95356 -11.76321 -11.14476 -11.12657 -11.02311 -10.87895 -10.28846 -9.84126 -9.77782 -9.64243 -8.67328 -8.34417 -6.12954 1.22872 1.33242 1.44375 1.45398 1.47731 1.55423 2.01966 2.07992 2.27536 2.60197 2.88667 2.99784 3.20221 3.28816 3.46591 3.57600 3.66815 3.74757 3.87273 3.94328 4.07456 4.21462 4.27169 4.29196 4.35178 4.40075 4.41208 4.49241 4.54901 4.64520 4.72794 4.74053 4.82395 4.84786 4.95064 5.04657 5.09607 5.10383 5.41823 5.42837 5.46306 5.59389 5.75463 6.03798 6.19742 6.42277 7.05713 7.06728 7.17089 8.74542 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.039808 B = 0.001702 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.204240 B =16446.833653 C =16506.306864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.615 5.615 3 C 0.106 3.894 4 C -0.117 4.117 5 C 0.033 3.967 6 H 0.070 0.930 7 N -0.484 5.484 8 C 0.064 3.936 9 C -0.149 4.149 10 H 0.143 0.857 11 C -0.159 4.159 12 H 0.137 0.863 13 C 0.067 3.933 14 C 0.093 3.907 15 H 0.104 0.896 16 N -0.682 5.682 17 C 0.540 3.460 18 O -0.563 6.563 19 C -0.128 4.128 20 S -0.151 6.151 21 C -0.548 4.548 22 H 0.084 0.916 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 0.999 3.001 26 H -0.263 1.263 27 H -0.279 1.279 28 H -0.261 1.261 29 C 0.515 3.485 30 O -0.580 6.580 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.085 0.915 36 H 0.116 0.884 37 H 0.102 0.898 38 H 0.048 0.952 39 H 0.124 0.876 40 H 0.034 0.966 41 H 0.078 0.922 42 H 0.420 0.580 43 H 0.115 0.885 44 H 0.111 0.889 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.780 24.660 -2.851 35.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.348 5.348 3 C -0.015 4.015 4 C -0.154 4.154 5 C -0.079 4.079 6 H 0.088 0.912 7 N -0.210 5.210 8 C -0.063 4.063 9 C -0.169 4.169 10 H 0.161 0.839 11 C -0.179 4.179 12 H 0.154 0.846 13 C -0.061 4.061 14 C -0.014 4.014 15 H 0.122 0.878 16 N -0.333 5.333 17 C 0.326 3.674 18 O -0.441 6.441 19 C -0.279 4.279 20 S 0.076 5.924 21 C -0.695 4.695 22 H 0.102 0.898 23 C -0.191 4.191 24 N -0.548 5.548 25 Si 0.821 3.179 26 H -0.187 1.187 27 H -0.205 1.205 28 H -0.185 1.185 29 C 0.302 3.698 30 O -0.459 6.459 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.124 0.876 35 H 0.104 0.896 36 H 0.135 0.865 37 H 0.120 0.880 38 H 0.066 0.934 39 H 0.142 0.858 40 H 0.052 0.948 41 H 0.096 0.904 42 H 0.258 0.742 43 H 0.133 0.867 44 H 0.130 0.870 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -24.991 23.947 -4.551 34.910 hybrid contribution 0.655 -1.200 1.649 2.142 sum -24.336 22.747 -2.902 33.438 Atomic orbital electron populations 1.21717 0.77039 1.03032 1.03526 1.48300 1.07416 1.07694 1.71424 1.22300 0.89458 0.86138 1.03618 1.22765 0.98141 0.91182 1.03334 1.22637 0.92425 1.00813 0.92008 0.91199 1.65658 1.14239 1.20438 1.20675 1.22774 0.85611 1.02631 0.95294 1.24040 1.01660 0.90016 1.01188 0.83925 1.23809 0.88631 1.04339 1.01145 0.84557 1.22497 0.98474 0.89219 0.95903 1.21626 0.90383 0.96259 0.93126 0.87766 1.44973 1.27045 1.50646 1.10670 1.20107 0.80823 0.77393 0.89053 1.90693 1.72900 1.59265 1.21236 1.23360 0.99767 1.03974 1.00832 1.85610 1.29662 1.62572 1.14551 1.23184 1.15418 1.37049 0.93895 0.89758 1.26136 0.97556 0.94976 1.00479 1.70180 1.25750 1.34241 1.24598 0.84996 0.77302 0.78547 0.77102 1.18732 1.20452 1.18530 1.21031 0.89839 0.84316 0.74632 1.90702 1.79400 1.23221 1.52597 0.92184 0.90166 0.89687 0.87624 0.89645 0.86549 0.87992 0.93413 0.85838 0.94786 0.90364 0.74219 0.86701 0.87037 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.88 11.14 127.77 1.42 2.31 16 2 N -0.62 -8.33 3.33 -842.90 -2.81 -11.14 16 3 C 0.11 0.62 7.35 86.84 0.64 1.26 16 4 C -0.12 -0.75 6.70 31.65 0.21 -0.54 16 5 C 0.03 0.52 2.41 44.91 0.11 0.62 16 6 H 0.07 1.24 8.02 -2.39 -0.02 1.22 16 7 N -0.48 -7.87 5.21 -856.28 -4.46 -12.33 16 8 C 0.06 0.88 5.66 86.47 0.49 1.37 16 9 C -0.15 -2.42 7.05 -9.92 -0.07 -2.49 16 10 H 0.14 1.82 8.14 -2.39 -0.02 1.80 16 11 C -0.16 -2.97 7.04 -9.94 -0.07 -3.04 16 12 H 0.14 2.16 8.14 -2.39 -0.02 2.14 16 13 C 0.07 1.42 5.24 86.45 0.45 1.88 16 14 C 0.09 2.21 5.98 45.00 0.27 2.48 16 15 H 0.10 3.15 7.40 -2.39 -0.02 3.13 16 16 N -0.68 -17.28 5.56 -442.52 -2.46 -19.74 16 17 C 0.54 19.93 7.85 87.66 0.69 20.61 16 18 O -0.56 -26.41 15.43 -3.02 -0.05 -26.45 16 19 C -0.13 -5.01 6.16 71.24 0.44 -4.57 16 20 S -0.15 -8.39 20.57 -56.49 -1.16 -9.55 16 21 C -0.55 -31.18 9.50 67.95 0.65 -30.54 16 22 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 23 C 0.01 0.76 5.49 84.86 0.47 1.22 16 24 N -0.91 -56.10 13.22 21.65 0.29 -55.81 16 25 Si 1.00 43.46 29.55 68.60 2.03 45.49 16 26 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 27 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 28 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 29 C 0.51 10.79 7.03 87.90 0.62 11.41 16 30 O -0.58 -17.60 16.57 -3.02 -0.05 -17.65 16 31 H 0.06 0.89 7.53 -2.38 -0.02 0.87 16 32 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 35 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.12 0.39 6.78 -2.39 -0.02 0.37 16 37 H 0.10 0.39 8.14 -2.39 -0.02 0.38 16 38 H 0.05 0.76 7.91 -2.38 -0.02 0.74 16 39 H 0.12 1.02 7.34 -2.38 -0.02 1.00 16 40 H 0.03 0.87 7.99 -2.39 -0.02 0.85 16 41 H 0.08 1.86 7.81 -2.38 -0.02 1.84 16 42 H 0.42 7.47 8.83 -92.71 -0.82 6.65 16 43 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 44 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 45 H 0.27 15.53 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -84.94 384.35 -2.18 -87.11 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: 0.19 Total: 18.08 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: 6.31 Total: 1.99 kcal Atomic # 7 Polarization: -89.57 SS G_CDS: -9.45 Total: -99.02 kcal Atomic # 8 Polarization: -44.00 SS G_CDS: -0.10 Total: -44.10 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: -8.39 SS G_CDS: -1.16 Total: -9.55 kcal Total: -84.94 -2.18 -87.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113898774.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.505 kcal (2) G-P(sol) polarization free energy of solvation -84.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds