Wall clock time and date at job start Sat Apr 11 2020 05:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35695 * 117.00079 * 2 1 4 4 C 1.38688 * 120.12597 * 359.72284 * 3 2 1 5 5 C 1.38044 * 120.11588 * 180.27550 * 4 3 2 6 6 C 1.38734 * 120.36544 * 0.02562 * 5 4 3 7 7 F 1.35095 * 119.87770 * 180.02562 * 6 5 4 8 8 C 1.37983 * 120.24856 * 359.97438 * 6 5 4 9 9 C 1.39723 * 119.88032 * 0.02562 * 8 6 5 10 10 C 1.47537 * 120.18301 * 179.97438 * 9 8 6 11 11 O 1.21584 * 120.00260 * 180.02562 * 10 9 8 12 12 N 1.34781 * 119.99712 * 0.02562 * 10 9 8 13 13 C 1.46493 * 120.00043 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47280 * 179.97438 * 13 12 10 15 15 N 1.46901 * 109.47279 * 179.97438 * 14 13 12 16 16 C 1.46906 * 111.00009 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.47160 * 180.02562 * 16 15 14 18 18 O 1.21297 * 119.99847 * 359.97438 * 17 16 15 19 19 N 1.34769 * 120.00246 * 180.02562 * 17 16 15 20 20 C 1.37097 * 120.00451 * 179.97438 * 19 17 16 21 21 H 1.08000 * 119.99466 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00375 * 180.02562 * 20 19 17 23 23 N 1.31411 * 119.99785 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00217 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46841 * 89.99903 * 24 22 20 26 26 H 1.48500 * 109.47290 * 209.99834 * 24 22 20 27 27 H 1.48500 * 109.46881 * 330.00287 * 24 22 20 28 28 H 1.09001 * 109.47365 * 300.00240 * 1 2 3 29 29 H 1.09004 * 109.47337 * 59.99907 * 1 2 3 30 30 H 1.09000 * 109.47314 * 180.02562 * 1 2 3 31 31 H 1.08007 * 119.93781 * 0.25059 * 4 3 2 32 32 H 1.07998 * 119.82006 * 179.97438 * 5 4 3 33 33 H 1.07995 * 120.06271 * 180.02562 * 8 6 5 34 34 H 0.96998 * 119.99657 * 359.97438 * 12 10 9 35 35 H 1.09006 * 109.47300 * 299.99619 * 13 12 10 36 36 H 1.08997 * 109.47742 * 59.99095 * 13 12 10 37 37 H 1.09004 * 109.47212 * 299.99499 * 14 13 12 38 38 H 1.09000 * 109.47226 * 59.99731 * 14 13 12 39 39 H 1.00904 * 111.00231 * 56.04619 * 15 14 13 40 40 H 1.08999 * 109.47088 * 299.99869 * 16 15 14 41 41 H 1.08990 * 109.46911 * 60.00022 * 16 15 14 42 42 H 0.97011 * 120.00017 * 359.97438 * 19 17 16 43 43 H 0.97006 * 119.99810 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 6 1.2923 2.3738 -0.0058 5 6 1.9193 3.6037 -0.0115 6 6 3.3042 3.6848 -0.0121 7 9 3.9075 4.8936 -0.0172 8 6 4.0679 2.5356 -0.0064 9 6 3.4440 1.2854 -0.0005 10 6 4.2541 0.0523 0.0050 11 8 3.7078 -1.0339 0.0096 12 7 5.5996 0.1299 0.0050 13 6 6.4040 -1.0944 0.0100 14 6 7.8896 -0.7287 0.0082 15 7 8.6962 -1.9564 0.0138 16 6 10.1315 -1.6434 0.0117 17 6 10.9250 -2.9246 0.0170 18 8 10.3514 -3.9933 0.0224 19 7 12.2721 -2.8829 0.0166 20 6 12.9941 -4.0483 0.0219 21 1 12.4832 -4.9999 0.0267 22 6 14.3829 -4.0053 0.0220 23 7 15.0044 -2.8475 0.0166 24 14 15.3665 -5.5934 0.0300 25 1 15.6275 -6.0209 -1.3680 26 1 16.6578 -5.3723 0.7293 27 1 14.5962 -6.6492 0.7348 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 0.2137 2.3185 -0.0062 32 1 1.3284 4.5077 -0.0165 33 1 5.1458 2.6023 -0.0064 34 1 6.0354 0.9965 0.0010 35 1 6.1739 -1.6768 0.9023 36 1 6.1742 -1.6838 -0.8776 37 1 8.1195 -0.1467 -0.8843 38 1 8.1197 -0.1392 0.8957 39 1 8.4550 -2.5512 -0.7648 40 1 10.3766 -1.0683 -0.8812 41 1 10.3773 -1.0597 0.8987 42 1 12.7309 -2.0282 0.0126 43 1 15.9740 -2.8175 0.0164 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132096359.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:59 Heat of formation + Delta-G solvation = -119.135108 kcal Electronic energy + Delta-G solvation = -27424.530825 eV Core-core repulsion = 22998.994648 eV Total energy + Delta-G solvation = -4425.536177 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.30001 -41.01105 -39.33563 -38.30606 -37.61363 -36.26314 -34.39052 -33.75708 -32.20647 -31.22634 -30.28956 -29.32543 -27.69339 -26.16548 -24.67436 -23.73992 -22.73732 -22.04258 -20.92889 -19.31582 -18.98631 -18.09368 -17.88920 -17.51880 -16.58359 -16.44882 -16.09859 -15.90470 -15.85855 -15.79928 -15.34592 -15.08488 -14.99256 -14.54460 -14.29383 -13.89290 -13.83539 -13.55190 -13.44211 -13.29746 -13.10240 -12.85006 -12.42412 -12.36113 -11.91126 -11.74341 -11.51623 -11.44765 -11.44601 -11.40843 -11.02741 -10.38675 -10.21755 -10.11002 -9.82575 -9.50846 -9.24144 -8.64820 -8.49907 -8.12416 -7.96283 -6.41660 -3.82428 0.17608 0.61654 2.42863 2.72012 2.79516 3.18525 3.27013 3.27274 3.33643 3.68219 3.90273 4.00151 4.04677 4.13736 4.37541 4.43177 4.54119 4.68145 4.69232 4.82180 4.90032 4.98020 5.04301 5.10251 5.18590 5.26473 5.31099 5.39797 5.45793 5.51570 5.73251 5.84514 5.91857 5.95583 6.04727 6.18366 6.26465 6.79508 7.09828 7.26276 7.55646 7.57707 8.01648 8.06312 8.61103 9.18025 9.53984 10.05400 10.76040 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023505 B = 0.001581 C = 0.001484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.959066 B =17702.112109 C =18859.992320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.276 6.276 3 C 0.178 3.822 4 C -0.192 4.192 5 C -0.086 4.086 6 C 0.053 3.947 7 F -0.137 7.137 8 C -0.082 4.082 9 C -0.143 4.143 10 C 0.560 3.440 11 O -0.510 6.510 12 N -0.726 5.726 13 C 0.122 3.878 14 C 0.049 3.951 15 N -0.665 5.665 16 C 0.052 3.948 17 C 0.440 3.560 18 O -0.582 6.582 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.269 1.269 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.106 0.894 31 H 0.146 0.854 32 H 0.143 0.857 33 H 0.147 0.853 34 H 0.397 0.603 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.033 0.967 38 H 0.077 0.923 39 H 0.353 0.647 40 H 0.045 0.955 41 H 0.087 0.913 42 H 0.392 0.608 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.792 18.019 -0.983 33.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.186 6.186 3 C 0.129 3.871 4 C -0.211 4.211 5 C -0.105 4.105 6 C 0.033 3.967 7 F -0.115 7.115 8 C -0.101 4.101 9 C -0.147 4.147 10 C 0.346 3.654 11 O -0.385 6.385 12 N -0.380 5.380 13 C -0.002 4.002 14 C -0.082 4.082 15 N -0.298 5.298 16 C -0.080 4.080 17 C 0.225 3.775 18 O -0.466 6.466 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.124 0.876 31 H 0.164 0.836 32 H 0.161 0.839 33 H 0.164 0.836 34 H 0.232 0.768 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.051 0.949 38 H 0.096 0.904 39 H 0.172 0.828 40 H 0.063 0.937 41 H 0.106 0.894 42 H 0.225 0.775 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -28.279 16.255 -0.290 32.619 hybrid contribution 1.147 1.099 -0.905 1.828 sum -27.132 17.354 -1.194 32.230 Atomic orbital electron populations 1.23238 0.78301 1.04821 1.01286 1.86425 1.21076 1.24797 1.86303 1.19057 0.90904 0.85257 0.91897 1.21126 1.00868 0.90951 1.08125 1.21123 0.92765 0.98934 0.97634 1.17335 0.90894 0.80534 1.07922 1.91529 1.83606 1.42026 1.94370 1.21154 1.00765 0.89974 0.98222 1.19176 0.90964 0.93460 1.11109 1.17769 0.81881 0.88373 0.77402 1.90867 1.71402 1.28328 1.47901 1.45805 1.05886 1.10177 1.76120 1.21297 0.89192 0.86019 1.03666 1.22088 0.91959 0.93071 1.01037 1.59941 1.03223 1.14828 1.51840 1.21672 0.87894 0.97145 1.01332 1.19777 0.83061 0.90035 0.84611 1.90536 1.69874 1.30872 1.55309 1.41855 1.04218 1.09569 1.64353 1.19716 0.88407 0.87222 1.47565 0.87876 1.25266 0.96893 0.98495 0.97300 1.69614 1.09760 1.24340 1.50617 0.85846 0.78681 0.81326 0.78371 1.20428 1.20925 1.19381 0.92371 0.92384 0.87581 0.83647 0.83875 0.83579 0.76797 0.89945 0.91138 0.94877 0.90417 0.82776 0.93701 0.89440 0.77451 0.91879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 101.05 0.99 1.09 16 2 O -0.28 -2.81 8.57 -40.69 -0.35 -3.16 16 3 C 0.18 1.61 6.70 -38.72 -0.26 1.35 16 4 C -0.19 -1.16 9.03 -39.49 -0.36 -1.51 16 5 C -0.09 -0.49 10.01 -39.47 -0.39 -0.89 16 6 C 0.05 0.38 7.28 -39.49 -0.29 0.09 16 7 F -0.14 -1.10 17.26 2.25 0.04 -1.06 16 8 C -0.08 -0.60 9.51 -39.12 -0.37 -0.97 16 9 C -0.14 -1.37 5.89 -104.85 -0.62 -1.99 16 10 C 0.56 6.74 7.76 -12.47 -0.10 6.64 16 11 O -0.51 -8.15 15.16 -16.61 -0.25 -8.40 16 12 N -0.73 -7.11 5.51 -61.35 -0.34 -7.45 16 13 C 0.12 1.41 5.93 -4.05 -0.02 1.39 16 14 C 0.05 0.55 5.80 -3.83 -0.02 0.53 16 15 N -0.67 -10.53 6.13 -115.06 -0.70 -11.24 16 16 C 0.05 0.90 6.17 -4.97 -0.03 0.87 16 17 C 0.44 10.38 7.82 -10.99 -0.09 10.30 16 18 O -0.58 -15.92 15.78 5.54 0.09 -15.83 16 19 N -0.56 -14.27 5.29 -10.96 -0.06 -14.33 16 20 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 21 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.51 13.05 55.50 0.72 -23.79 16 24 Si 0.93 21.12 29.55 -169.99 -5.02 16.10 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 27 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 28 H 0.06 0.20 7.67 -51.93 -0.40 -0.20 16 29 H 0.06 0.20 7.65 -51.93 -0.40 -0.20 16 30 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.15 0.48 6.30 -52.48 -0.33 0.15 16 32 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 33 H 0.15 0.74 6.40 -52.49 -0.34 0.40 16 34 H 0.40 2.68 6.50 -40.82 -0.27 2.42 16 35 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.35 5.79 8.43 -39.29 -0.33 5.46 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 42 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 43 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 375.86 15.07 5.66 5.66 Total: -1.00 -35.64 375.86 -7.28 -42.91 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -5.27 Total: 11.72 kcal Atomic # 6 Polarization: 10.66 SS G_CDS: -1.80 Total: 8.86 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: -0.38 Total: -56.80 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -0.51 Total: -27.39 kcal Atomic # 9 Polarization: -1.10 SS G_CDS: 0.04 Total: -1.06 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.64 -7.28 -42.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132096359.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.220 kcal (2) G-P(sol) polarization free energy of solvation -35.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds