Wall clock time and date at job start Sat Apr 11 2020 05:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35695 * 117.00079 * 2 1 4 4 C 1.38688 * 120.12597 * 359.72284 * 3 2 1 5 5 C 1.38044 * 120.11588 * 180.27550 * 4 3 2 6 6 C 1.38734 * 120.36544 * 0.02562 * 5 4 3 7 7 F 1.35095 * 119.87770 * 180.02562 * 6 5 4 8 8 C 1.37983 * 120.24856 * 359.97438 * 6 5 4 9 9 C 1.39723 * 119.88032 * 0.02562 * 8 6 5 10 10 C 1.47537 * 120.18301 * 179.97438 * 9 8 6 11 11 O 1.21584 * 120.00260 * 180.02562 * 10 9 8 12 12 N 1.34781 * 119.99712 * 0.02562 * 10 9 8 13 13 C 1.46493 * 120.00043 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47280 * 179.97438 * 13 12 10 15 15 N 1.46901 * 109.47279 * 179.97438 * 14 13 12 16 16 C 1.46906 * 111.00009 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.47160 * 180.02562 * 16 15 14 18 18 O 1.21297 * 119.99847 * 359.97438 * 17 16 15 19 19 N 1.34769 * 120.00246 * 180.02562 * 17 16 15 20 20 C 1.37097 * 120.00451 * 179.97438 * 19 17 16 21 21 H 1.08000 * 119.99466 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00375 * 180.02562 * 20 19 17 23 23 N 1.31411 * 119.99785 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00217 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46841 * 89.99903 * 24 22 20 26 26 H 1.48500 * 109.47290 * 209.99834 * 24 22 20 27 27 H 1.48500 * 109.46881 * 330.00287 * 24 22 20 28 28 H 1.09001 * 109.47365 * 300.00240 * 1 2 3 29 29 H 1.09004 * 109.47337 * 59.99907 * 1 2 3 30 30 H 1.09000 * 109.47314 * 180.02562 * 1 2 3 31 31 H 1.08007 * 119.93781 * 0.25059 * 4 3 2 32 32 H 1.07998 * 119.82006 * 179.97438 * 5 4 3 33 33 H 1.07995 * 120.06271 * 180.02562 * 8 6 5 34 34 H 0.96998 * 119.99657 * 359.97438 * 12 10 9 35 35 H 1.09006 * 109.47300 * 299.99619 * 13 12 10 36 36 H 1.08997 * 109.47742 * 59.99095 * 13 12 10 37 37 H 1.09004 * 109.47212 * 299.99499 * 14 13 12 38 38 H 1.09000 * 109.47226 * 59.99731 * 14 13 12 39 39 H 1.00904 * 111.00231 * 56.04619 * 15 14 13 40 40 H 1.08999 * 109.47088 * 299.99869 * 16 15 14 41 41 H 1.08990 * 109.46911 * 60.00022 * 16 15 14 42 42 H 0.97011 * 120.00017 * 359.97438 * 19 17 16 43 43 H 0.97006 * 119.99810 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 6 1.2923 2.3738 -0.0058 5 6 1.9193 3.6037 -0.0115 6 6 3.3042 3.6848 -0.0121 7 9 3.9075 4.8936 -0.0172 8 6 4.0679 2.5356 -0.0064 9 6 3.4440 1.2854 -0.0005 10 6 4.2541 0.0523 0.0050 11 8 3.7078 -1.0339 0.0096 12 7 5.5996 0.1299 0.0050 13 6 6.4040 -1.0944 0.0100 14 6 7.8896 -0.7287 0.0082 15 7 8.6962 -1.9564 0.0138 16 6 10.1315 -1.6434 0.0117 17 6 10.9250 -2.9246 0.0170 18 8 10.3514 -3.9933 0.0224 19 7 12.2721 -2.8829 0.0166 20 6 12.9941 -4.0483 0.0219 21 1 12.4832 -4.9999 0.0267 22 6 14.3829 -4.0053 0.0220 23 7 15.0044 -2.8475 0.0166 24 14 15.3665 -5.5934 0.0300 25 1 15.6275 -6.0209 -1.3680 26 1 16.6578 -5.3723 0.7293 27 1 14.5962 -6.6492 0.7348 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 0.2137 2.3185 -0.0062 32 1 1.3284 4.5077 -0.0165 33 1 5.1458 2.6023 -0.0064 34 1 6.0354 0.9965 0.0010 35 1 6.1739 -1.6768 0.9023 36 1 6.1742 -1.6838 -0.8776 37 1 8.1195 -0.1467 -0.8843 38 1 8.1197 -0.1392 0.8957 39 1 8.4550 -2.5512 -0.7648 40 1 10.3766 -1.0683 -0.8812 41 1 10.3773 -1.0597 0.8987 42 1 12.7309 -2.0282 0.0126 43 1 15.9740 -2.8175 0.0164 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132096359.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:59 Heat of formation + Delta-G solvation = -146.665776 kcal Electronic energy + Delta-G solvation = -27425.724644 eV Core-core repulsion = 22998.994648 eV Total energy + Delta-G solvation = -4426.729996 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.85979 -41.66925 -40.24385 -40.03764 -38.19458 -37.45394 -35.99810 -35.25240 -33.27828 -32.82994 -30.81722 -30.44041 -28.20792 -27.64903 -25.90727 -24.88390 -23.42782 -22.89516 -21.75386 -21.09700 -19.93260 -19.65199 -18.69864 -18.14455 -17.81663 -17.28554 -17.08547 -16.95125 -16.80226 -16.49694 -16.39661 -16.14543 -15.93064 -15.78369 -15.52913 -15.28518 -14.93664 -14.84770 -14.23789 -14.08562 -14.01769 -13.83972 -13.52325 -13.34800 -13.28019 -12.93748 -12.86959 -12.58476 -12.42778 -12.39402 -12.23523 -12.12024 -11.91508 -11.50782 -11.03947 -10.41364 -10.36429 -10.12572 -10.01413 -9.38357 -9.21996 -8.46712 -5.95319 -0.39687 0.08199 1.38300 1.42304 1.54997 1.71130 1.92745 2.05452 2.24806 2.30607 2.58965 2.99133 3.15371 3.20707 3.48432 3.57493 3.60197 3.86300 3.97088 4.03087 4.11808 4.30037 4.32279 4.34199 4.39750 4.46189 4.50608 4.53102 4.62105 4.73910 4.81321 4.89282 4.93941 4.98061 5.04532 5.30568 5.41340 5.56219 5.84516 6.07132 6.28235 6.32306 6.48795 6.60373 7.12897 7.17262 7.56351 8.12085 8.70540 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023505 B = 0.001581 C = 0.001484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.959066 B =17702.112109 C =18859.992320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.312 6.312 3 C 0.162 3.838 4 C -0.184 4.184 5 C -0.073 4.073 6 C 0.041 3.959 7 F -0.141 7.141 8 C -0.076 4.076 9 C -0.169 4.169 10 C 0.556 3.444 11 O -0.560 6.560 12 N -0.712 5.712 13 C 0.130 3.870 14 C 0.058 3.942 15 N -0.686 5.686 16 C 0.068 3.932 17 C 0.435 3.565 18 O -0.625 6.625 19 N -0.572 5.572 20 C -0.336 4.336 21 H 0.078 0.922 22 C -0.012 4.012 23 N -0.919 5.919 24 Si 0.993 3.007 25 H -0.271 1.271 26 H -0.270 1.270 27 H -0.275 1.275 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.108 0.892 31 H 0.176 0.824 32 H 0.173 0.827 33 H 0.165 0.835 34 H 0.414 0.586 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.094 0.906 39 H 0.346 0.654 40 H 0.073 0.927 41 H 0.110 0.890 42 H 0.398 0.602 43 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.352 20.549 -1.101 35.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.224 6.224 3 C 0.114 3.886 4 C -0.202 4.202 5 C -0.092 4.092 6 C 0.021 3.979 7 F -0.120 7.120 8 C -0.095 4.095 9 C -0.173 4.173 10 C 0.344 3.656 11 O -0.439 6.439 12 N -0.366 5.366 13 C 0.005 3.995 14 C -0.071 4.071 15 N -0.319 5.319 16 C -0.064 4.064 17 C 0.222 3.778 18 O -0.512 6.512 19 N -0.209 5.209 20 C -0.465 4.465 21 H 0.096 0.904 22 C -0.212 4.212 23 N -0.560 5.560 24 Si 0.816 3.184 25 H -0.196 1.196 26 H -0.195 1.195 27 H -0.200 1.200 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.126 0.874 31 H 0.193 0.807 32 H 0.190 0.810 33 H 0.182 0.818 34 H 0.252 0.748 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.113 0.887 39 H 0.165 0.835 40 H 0.091 0.909 41 H 0.128 0.872 42 H 0.232 0.768 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -28.823 18.865 -0.407 34.450 hybrid contribution 1.210 0.370 -0.865 1.533 sum -27.613 19.235 -1.272 33.676 Atomic orbital electron populations 1.23507 0.76209 1.05688 1.03090 1.86379 1.23518 1.26005 1.86499 1.19388 0.91087 0.85968 0.92197 1.21404 1.02155 0.89805 1.06861 1.21487 0.92406 0.99912 0.95358 1.17495 0.91629 0.80210 1.08528 1.91521 1.83810 1.42192 1.94487 1.21257 1.01776 0.89189 0.97264 1.19078 0.91325 0.92984 1.13929 1.18232 0.82358 0.88694 0.76302 1.90832 1.72364 1.30287 1.50463 1.45621 1.05314 1.10419 1.75217 1.21062 0.89842 0.86513 1.02050 1.22077 0.90534 0.91524 1.02974 1.59907 1.02897 1.17065 1.52007 1.21531 0.87696 0.93568 1.03638 1.20936 0.82733 0.91840 0.82244 1.90506 1.70621 1.33395 1.56678 1.41915 1.04986 1.09036 1.64993 1.19667 0.89405 0.87421 1.50024 0.90439 1.26024 0.97188 1.01733 0.96244 1.69667 1.10342 1.25712 1.50238 0.84933 0.77391 0.77387 0.78648 1.19598 1.19460 1.19958 0.90512 0.90472 0.87410 0.80713 0.80958 0.81780 0.74797 0.92191 0.92378 0.92352 0.88731 0.83534 0.90871 0.87247 0.76832 0.91272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.81 113.37 1.11 1.20 16 2 O -0.31 -6.46 8.57 -69.21 -0.59 -7.06 16 3 C 0.16 2.84 6.70 22.83 0.15 3.00 16 4 C -0.18 -1.77 9.03 22.33 0.20 -1.57 16 5 C -0.07 -0.62 10.01 22.34 0.22 -0.40 16 6 C 0.04 0.50 7.28 22.33 0.16 0.66 16 7 F -0.14 -1.96 17.26 44.97 0.78 -1.18 16 8 C -0.08 -1.00 9.51 22.57 0.21 -0.78 16 9 C -0.17 -3.19 5.89 -20.01 -0.12 -3.31 16 10 C 0.56 13.73 7.76 86.70 0.67 14.40 16 11 O -0.56 -18.97 15.16 16.96 0.26 -18.72 16 12 N -0.71 -13.59 5.51 -466.29 -2.57 -16.15 16 13 C 0.13 3.00 5.93 86.38 0.51 3.52 16 14 C 0.06 1.21 5.80 86.30 0.50 1.71 16 15 N -0.69 -21.11 6.13 -517.93 -3.17 -24.28 16 16 C 0.07 2.23 6.17 85.56 0.53 2.75 16 17 C 0.43 20.68 7.82 87.66 0.69 21.36 16 18 O -0.63 -35.18 15.78 -3.08 -0.05 -35.23 16 19 N -0.57 -29.28 5.29 -306.99 -1.62 -30.91 16 20 C -0.34 -19.19 9.68 84.04 0.81 -18.37 16 21 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 22 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 23 N -0.92 -49.38 13.05 21.66 0.28 -49.10 16 24 Si 0.99 43.15 29.55 68.60 2.03 45.18 16 25 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 26 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 27 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 28 H 0.08 0.40 7.67 -2.39 -0.02 0.38 16 29 H 0.08 0.39 7.65 -2.38 -0.02 0.37 16 30 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.18 0.54 6.30 -2.91 -0.02 0.53 16 32 H 0.17 0.44 8.06 -2.91 -0.02 0.42 16 33 H 0.16 1.33 6.40 -2.91 -0.02 1.31 16 34 H 0.41 4.87 6.50 -92.71 -0.60 4.27 16 35 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.35 11.40 8.43 -89.69 -0.76 10.64 16 40 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 42 H 0.40 19.11 7.90 -92.70 -0.73 18.37 16 43 H 0.28 13.96 8.31 -92.70 -0.77 13.19 16 Total: -1.00 -80.37 375.86 0.47 -79.90 By element: Atomic # 1 Polarization: 34.56 SS G_CDS: -0.99 Total: 33.57 kcal Atomic # 6 Polarization: 17.85 SS G_CDS: 6.13 Total: 23.98 kcal Atomic # 7 Polarization: -113.36 SS G_CDS: -7.08 Total: -120.44 kcal Atomic # 8 Polarization: -60.62 SS G_CDS: -0.38 Total: -61.01 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.78 Total: -1.18 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -80.37 0.47 -79.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132096359.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.767 kcal (2) G-P(sol) polarization free energy of solvation -80.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds